FFCP PHASE1:Hg19::chr19:7733964..7733984,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:7733964..7733984,+ to FFCP PHASE1:Hg19::chr19:7733964..7733984,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56729 | |EntrezGene=56729 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20389 | |HGNC=20389 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HD89 | |UniProt=Q9HD89 | ||
|association_with_transcript=0bp_to_ENST00000221515,NM_001193374,NM_020415,uc002mhf.1,uc002mhg.1_5end | |||
|cluster_id=chr19:7733964..7733984,+ | |||
|coexpression_cluster_id=C386 | |||
|description=CAGE_peak_2_at_RETN_5end | |||
|id=chr19:7733964..7733984,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.15e-56!42;CL:0000860!7.60e-52!45;CL:0002194!1.10e-38!63;CL:0000576!1.10e-38!63;CL:0000040!1.10e-38!63;CL:0000559!1.10e-38!63;CL:0002009!5.04e-37!65;CL:0002087!1.08e-36!119;CL:0000766!1.49e-36!76;CL:0000037!1.21e-35!172;CL:0000566!1.21e-35!172;CL:0002032!2.01e-34!165;CL:0000837!2.01e-34!165;CL:0000763!9.19e-34!112;CL:0000049!9.19e-34!112;CL:0000738!2.58e-33!140;CL:0000839!2.72e-33!70;CL:0000557!1.31e-32!71;CL:0000988!2.60e-32!182;CL:0002031!2.36e-30!124;CL:0002393!1.22e-12!9;CL:0002397!1.22e-12!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.40e-63;33!CL:0002057;8.40e-63;33!CL:0000473;5.25e-44;39!CL:0000234;5.25e-44;39!CL:0000576;6.97e-44;48!CL:0000766;1.93e-27;69!CL:0000763;7.13e-15;100!CL:0002087;1.87e-11;104!CL:0002393;1.80e-10;6!CL:0002397;1.80e-10;6!CL:0000767;2.51e-08;3!CL:0000738;2.85e-08;136!CL:0000226;3.22e-07;3!CL:0000842;3.22e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.90e-80,42;CL:0002057,2.90e-80,42;CL:0000473,8.72e-69,48;CL:0000234,8.72e-69,48;CL:0002194,9.86e-53,59;CL:0000576,9.86e-53,59;CL:0000040,9.86e-53,59;CL:0000559,9.86e-53,59;CL:0000766,1.06e-51,72;CL:0002009,1.16e-50,61;CL:0000839,4.93e-46,66;CL:0000557,3.44e-45,67;CL:0000763,9.18e-45,108;CL:0000049,9.18e-45,108;CL:0000037,1.80e-33,168;CL:0002087,1.29e-32,115;CL:0000738,7.91e-32,136;CL:0002032,3.37e-31,161;CL:0000837,3.37e-31,161;CL:0000988,5.08e-31,177;CL:0002031,3.22e-26,120;CL:0002393,9.90e-13,9;CL:0002397,9.90e-13,9;CL:0000134,1.82e-08,354;CL:0000767,1.84e-08,3;CL:0002320,4.74e-08,361;CL:0000226,2.94e-07,3;CL:0000842,2.94e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;3.84e-59;42!CL:0000049;8.91e-14;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.56e-43!102;UBERON:0003061!5.56e-43!102;UBERON:0002193!4.05e-40!112;UBERON:0002371!2.99e-27!80;UBERON:0001474!2.56e-24!86;UBERON:0002405!5.12e-24!115;UBERON:0004765!1.44e-18!101;UBERON:0001434!1.44e-18!101;UBERON:0003081!4.70e-14!216;UBERON:0000178!1.72e-13!15;UBERON:0000179!1.72e-13!15;UBERON:0000463!1.72e-13!15;UBERON:0007023!1.52e-08!115;UBERON:0002204!1.10e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.56e-22;15!UBERON:0000179;6.56e-22;15!UBERON:0000463;6.56e-22;15!UBERON:0002390;1.81e-13;32!UBERON:0002193;7.16e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.34e-60,98;UBERON:0003061,2.34e-60,98;UBERON:0002193,9.82e-56,108;UBERON:0002371,1.37e-38,76;UBERON:0002405,2.08e-37,93;UBERON:0001474,5.46e-35,82;UBERON:0004765,6.16e-31,90;UBERON:0001434,8.73e-27,100;UBERON:0003081,2.14e-25,203;UBERON:0000178,6.40e-22,15;UBERON:0000179,6.40e-22,15;UBERON:0000463,6.40e-22,15;UBERON:0002204,9.06e-13,167;UBERON:0000926,6.08e-12,315;UBERON:0004120,6.08e-12,315;UBERON:0006603,6.08e-12,315;UBERON:0002384,1.74e-07,371 | |||
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| ||
|short_description=p2@RETN | |||
}} | }} |
Latest revision as of 21:16, 24 September 2015
Short description: | p2@RETN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RETN_5end |
Coexpression cluster: | C386_chronic_acute_Hodgkin_NK_thymus_liver_blood |
Association with transcript: | 0bp_to_ENST00000221515, NM_001193374, NM_020415, uc002mhf.1, uc002mhg.1_5end |
EntrezGene: | RETN |
HGNC: | 20389 |
UniProt: | Q9HD89 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.90e-80 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.90e-80 | 42 |
defensive cell | 8.72e-69 | 48 |
phagocyte | 8.72e-69 | 48 |
monopoietic cell | 9.86e-53 | 59 |
monocyte | 9.86e-53 | 59 |
monoblast | 9.86e-53 | 59 |
promonocyte | 9.86e-53 | 59 |
myeloid leukocyte | 1.06e-51 | 72 |
macrophage dendritic cell progenitor | 1.16e-50 | 61 |
myeloid lineage restricted progenitor cell | 4.93e-46 | 66 |
granulocyte monocyte progenitor cell | 3.44e-45 | 67 |
myeloid cell | 9.18e-45 | 108 |
common myeloid progenitor | 9.18e-45 | 108 |
hematopoietic stem cell | 1.80e-33 | 168 |
nongranular leukocyte | 1.29e-32 | 115 |
leukocyte | 7.91e-32 | 136 |
hematopoietic oligopotent progenitor cell | 3.37e-31 | 161 |
hematopoietic multipotent progenitor cell | 3.37e-31 | 161 |
hematopoietic cell | 5.08e-31 | 177 |
hematopoietic lineage restricted progenitor cell | 3.22e-26 | 120 |
intermediate monocyte | 9.90e-13 | 9 |
CD14-positive, CD16-positive monocyte | 9.90e-13 | 9 |
mesenchymal cell | 1.82e-08 | 354 |
basophil | 1.84e-08 | 3 |
connective tissue cell | 4.74e-08 | 361 |
single nucleate cell | 2.94e-07 | 3 |
mononuclear cell | 2.94e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.34e-60 | 98 |
blood island | 2.34e-60 | 98 |
hemolymphoid system | 9.82e-56 | 108 |
bone marrow | 1.37e-38 | 76 |
immune system | 2.08e-37 | 93 |
bone element | 5.46e-35 | 82 |
skeletal element | 6.16e-31 | 90 |
skeletal system | 8.73e-27 | 100 |
lateral plate mesoderm | 2.14e-25 | 203 |
blood | 6.40e-22 | 15 |
haemolymphatic fluid | 6.40e-22 | 15 |
organism substance | 6.40e-22 | 15 |
musculoskeletal system | 9.06e-13 | 167 |
mesoderm | 6.08e-12 | 315 |
mesoderm-derived structure | 6.08e-12 | 315 |
presumptive mesoderm | 6.08e-12 | 315 |
connective tissue | 1.74e-07 | 371 |