FFCP PHASE1:Hg19::chr5:137610280..137610295,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2676 | |EntrezGene=2676 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4245 | |HGNC=4245 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-26bp_to_ENST00000378362_5end | |association_with_transcript=-26bp_to_ENST00000378362_5end | ||
|cluster_id=chr5:137610280..137610295,- | |||
|coexpression_cluster_id=C76 | |coexpression_cluster_id=C76 | ||
|description=CAGE_peak_4_at_GFRA3_5end | |description=CAGE_peak_4_at_GFRA3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000333;2.02e-15;5!CL:0002535;1.43e-10;2 | |ontology_enrichment_celltype_v019=CL:0000333;2.02e-15;5!CL:0002535;1.43e-10;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002535,1.43e-10,2 | |||
|ontology_enrichment_development_v019=UBERON:0001045;3.25e-19;1!UBERON:0005754;3.25e-19;1!UBERON:0007297;2.72e-10;2 | |ontology_enrichment_development_v019=UBERON:0001045;3.25e-19;1!UBERON:0005754;3.25e-19;1!UBERON:0007297;2.72e-10;2 | ||
|ontology_enrichment_disease=DOID:3095!5.51e-07!22;DOID:2994!5.51e-07!22 | |ontology_enrichment_disease=DOID:3095!5.51e-07!22;DOID:2994!5.51e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:0050619;1.08e-19;1!DOID:1357;1.08e-19;1!DOID:169;5.10e-13;6!DOID:171;3.50e-08;10 | |ontology_enrichment_disease_v019=DOID:0050619;1.08e-19;1!DOID:1357;1.08e-19;1!DOID:169;5.10e-13;6!DOID:171;3.50e-08;10 | ||
|ontology_enrichment_disease_v019_2=DOID:0050619,1.08e-19,1;DOID:1357,1.08e-19,1;DOID:169,6.12e-13,6;DOID:171,3.90e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0003135!2.71e-10!11;UBERON:0007023!5.70e-10!115;UBERON:0006947!1.31e-08!3;UBERON:0004054!1.31e-08!3;UBERON:0000473!1.51e-07!8;UBERON:0003101!2.54e-07!22;UBERON:0000079!2.54e-07!22 | |ontology_enrichment_uberon=UBERON:0003135!2.71e-10!11;UBERON:0007023!5.70e-10!115;UBERON:0006947!1.31e-08!3;UBERON:0004054!1.31e-08!3;UBERON:0000473!1.51e-07!8;UBERON:0003101!2.54e-07!22;UBERON:0000079!2.54e-07!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0006947;8.94e-25;3!UBERON:0004054;8.94e-25;3!UBERON:0001764;1.08e-19;1!UBERON:0001825;1.08e-19;1!UBERON:0001154;3.25e-19;1!UBERON:0001000;3.25e-19;1!UBERON:0000998;3.25e-19;1!UBERON:0000996;3.25e-19;1!UBERON:0001153;3.25e-19;1!UBERON:0006868;3.25e-19;1!UBERON:0009854;3.25e-19;1!UBERON:0005352;3.25e-19;1!UBERON:0005904;7.41e-19;4!UBERON:0000013;2.02e-15;5!UBERON:0002410;2.02e-15;5!UBERON:0003135;2.74e-15;11!UBERON:0004175;4.30e-14;21!UBERON:0006955;1.43e-10;2!UBERON:0004801;1.43e-10;2!UBERON:0000473;6.34e-10;8!UBERON:0000010;5.41e-09;8!UBERON:0000058;4.04e-08;10!UBERON:0003101;5.93e-08;22!UBERON:0000079;5.93e-08;22!UBERON:0003133;6.00e-08;44 | |ontology_enrichment_uberon_v019=UBERON:0006947;8.94e-25;3!UBERON:0004054;8.94e-25;3!UBERON:0001764;1.08e-19;1!UBERON:0001825;1.08e-19;1!UBERON:0001154;3.25e-19;1!UBERON:0001000;3.25e-19;1!UBERON:0000998;3.25e-19;1!UBERON:0000996;3.25e-19;1!UBERON:0001153;3.25e-19;1!UBERON:0006868;3.25e-19;1!UBERON:0009854;3.25e-19;1!UBERON:0005352;3.25e-19;1!UBERON:0005904;7.41e-19;4!UBERON:0000013;2.02e-15;5!UBERON:0002410;2.02e-15;5!UBERON:0003135;2.74e-15;11!UBERON:0004175;4.30e-14;21!UBERON:0006955;1.43e-10;2!UBERON:0004801;1.43e-10;2!UBERON:0000473;6.34e-10;8!UBERON:0000010;5.41e-09;8!UBERON:0000058;4.04e-08;10!UBERON:0003101;5.93e-08;22!UBERON:0000079;5.93e-08;22!UBERON:0003133;6.00e-08;44 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0006947,6.22e-25,3;UBERON:0004054,6.22e-25,3;UBERON:0001764,1.08e-19,1;UBERON:0001825,1.08e-19,1;UBERON:0001000,2.25e-19,1;UBERON:0005352,2.25e-19,1;UBERON:0000998,2.71e-19,1;UBERON:0006868,2.71e-19,1;UBERON:0001154,3.25e-19,1;UBERON:0001153,3.25e-19,1;UBERON:0001045,3.25e-19,1;UBERON:0000996,4.69e-19,1;UBERON:0005904,5.64e-19,4;UBERON:0003135,2.49e-15,11;UBERON:0000013,2.51e-15,5;UBERON:0002410,2.51e-15,5;UBERON:0004175,6.57e-12,25;UBERON:0006955,1.43e-10,2;UBERON:0004801,1.43e-10,2;UBERON:0000473,6.34e-10,8;UBERON:0003133,1.81e-09,48;UBERON:0000010,6.11e-09,8;UBERON:0003101,5.66e-08,22;UBERON:0000079,5.66e-08,22;UBERON:0005156,1.04e-07,59;UBERON:0000990,1.04e-07,59 | |||
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| ||
|short_description=p4@GFRA3 | |short_description=p4@GFRA3 | ||
}} | }} |
Latest revision as of 22:09, 24 September 2015
Short description: | p4@GFRA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GFRA3_5end |
Coexpression cluster: | C76_argyrophil_gastrointestinal_temporal_duodenum_neuroblastoma_merkel_smallcell |
Association with transcript: | -26bp_to_ENST00000378362_5end |
EntrezGene: | GFRA3 |
HGNC: | 4245 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 1.43e-10 | 2 |
Ontology term | p-value | n |
---|---|---|
male genital duct | 6.22e-25 | 3 |
internal male genitalia | 6.22e-25 | 3 |
maxillary sinus | 1.08e-19 | 1 |
paranasal sinus | 1.08e-19 | 1 |
vas deferens | 2.25e-19 | 1 |
spermatic cord | 2.25e-19 | 1 |
seminal vesicle | 2.71e-19 | 1 |
seminal fluid secreting gland | 2.71e-19 | 1 |
vermiform appendix | 3.25e-19 | 1 |
caecum | 3.25e-19 | 1 |
midgut | 3.25e-19 | 1 |
vagina | 4.69e-19 | 1 |
duct of male reproductive system | 5.64e-19 | 4 |
male reproductive organ | 2.49e-15 | 11 |
sympathetic nervous system | 2.51e-15 | 5 |
autonomic nervous system | 2.51e-15 | 5 |
internal genitalia | 6.57e-12 | 25 |
uterine epithelium | 1.43e-10 | 2 |
cervix epithelium | 1.43e-10 | 2 |
testis | 6.34e-10 | 8 |
reproductive organ | 1.81e-09 | 48 |
peripheral nervous system | 6.11e-09 | 8 |
male organism | 5.66e-08 | 22 |
male reproductive system | 5.66e-08 | 22 |
reproductive structure | 1.04e-07 | 59 |
reproductive system | 1.04e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 1.08e-19 | 1 |
maxillary sinus cancer | 1.08e-19 | 1 |
neuroendocrine tumor | 6.12e-13 | 6 |
neuroectodermal tumor | 3.90e-08 | 10 |