FFCP PHASE1:Hg19::chr12:8549301..8549320,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389634 | |EntrezGene=389634 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=78bp_to_ENST00000536864,ENST00000544461,uc001qul.2_5end | |association_with_transcript=78bp_to_ENST00000536864,ENST00000544461,uc001qul.2_5end | ||
|cluster_id=chr12:8549301..8549320,- | |||
|coexpression_cluster_id=C45 | |||
|description=CAGE_peak_1_at_LOC389634_5end | |description=CAGE_peak_1_at_LOC389634_5end | ||
|id=chr12:8549301..8549320,- | |id=chr12:8549301..8549320,- | ||
|ontology_enrichment_celltype=CL:0002057!6.59e-47!42;CL:0000860!8.77e-43!45;CL:0000766!1.74e-35!76;CL:0002194!1.34e-33!63;CL:0000576!1.34e-33!63;CL:0000040!1.34e-33!63;CL:0000559!1.34e-33!63;CL:0002009!4.22e-32!65;CL:0000839!9.69e-29!70;CL:0000557!3.99e-28!71;CL:0000763!1.26e-20!112;CL:0000049!1.26e-20!112;CL:0000738!3.58e-18!140;CL:0002087!1.14e-17!119;CL:0000988!1.53e-14!182;CL:0002031!1.22e-13!124;CL:0000037!7.04e-13!172;CL:0000566!7.04e-13!172;CL:0002032!6.30e-12!165;CL:0000837!6.30e-12!165;CL:0002322!1.31e-07!5;CL:0000080!1.80e-07!6;CL:0000094!8.69e-07!8 | |ontology_enrichment_celltype=CL:0002057!6.59e-47!42;CL:0000860!8.77e-43!45;CL:0000766!1.74e-35!76;CL:0002194!1.34e-33!63;CL:0000576!1.34e-33!63;CL:0000040!1.34e-33!63;CL:0000559!1.34e-33!63;CL:0002009!4.22e-32!65;CL:0000839!9.69e-29!70;CL:0000557!3.99e-28!71;CL:0000763!1.26e-20!112;CL:0000049!1.26e-20!112;CL:0000738!3.58e-18!140;CL:0002087!1.14e-17!119;CL:0000988!1.53e-14!182;CL:0002031!1.22e-13!124;CL:0000037!7.04e-13!172;CL:0000566!7.04e-13!172;CL:0002032!6.30e-12!165;CL:0000837!6.30e-12!165;CL:0002322!1.31e-07!5;CL:0000080!1.80e-07!6;CL:0000094!8.69e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000860;9.83e-73;33!CL:0002057;9.83e-73;33!CL:0000473;2.53e-50;39!CL:0000234;2.53e-50;39!CL:0000576;1.10e-42;48!CL:0000766;4.66e-26;69!CL:0000763;5.25e-12;100!CL:0002087;6.54e-11;104!CL:0000771;1.66e-09;2!CL:0000738;8.49e-09;136!CL:0000094;2.96e-08;8!CL:0002322;1.74e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.97e-78,42;CL:0002057,7.97e-78,42;CL:0000473,3.68e-67,48;CL:0000234,3.68e-67,48;CL:0000766,5.19e-55,72;CL:0002194,3.13e-52,59;CL:0000576,3.13e-52,59;CL:0000040,3.13e-52,59;CL:0000559,3.13e-52,59;CL:0002009,2.64e-50,61;CL:0000839,5.42e-46,66;CL:0000557,3.31e-45,67;CL:0000763,4.02e-34,108;CL:0000049,4.02e-34,108;CL:0000738,7.72e-31,136;CL:0002087,5.80e-29,115;CL:0002031,7.61e-24,120;CL:0000037,2.34e-23,168;CL:0000988,3.14e-23,177;CL:0002032,1.03e-21,161;CL:0000837,1.03e-21,161;CL:0000771,1.41e-09,2;CL:0000094,2.57e-08,8;CL:0002322,2.13e-07,5;CL:0000134,2.36e-07,354;CL:0000219,3.40e-07,386;CL:0002320,4.73e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;2.15e-56;42!CL:0000049;2.05e-09;108!UBERON:0009117;7.42e-07;10!UBERON:0005564;7.42e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.86e-28!102;UBERON:0003061!3.86e-28!102;UBERON:0002193!5.09e-24!112;UBERON:0002371!2.61e-23!80;UBERON:0001474!1.09e-21!86;UBERON:0004765!2.41e-17!101;UBERON:0001434!2.41e-17!101;UBERON:0002405!2.23e-13!115;UBERON:0001893!2.23e-13!34;UBERON:0002619!9.39e-13!22;UBERON:0002791!1.04e-12!33;UBERON:0001950!1.36e-12!20;UBERON:0002020!3.45e-12!34;UBERON:0003528!3.45e-12!34;UBERON:0001869!7.62e-12!32;UBERON:0001049!5.18e-11!57;UBERON:0005068!5.18e-11!57;UBERON:0006241!5.18e-11!57;UBERON:0007135!5.18e-11!57;UBERON:0001017!6.99e-11!82;UBERON:0000956!1.02e-10!25;UBERON:0000203!1.02e-10!25;UBERON:0003081!1.31e-10!216;UBERON:0007023!1.99e-10!115;UBERON:0002780!4.61e-10!41;UBERON:0001890!4.61e-10!41;UBERON:0006240!4.61e-10!41;UBERON:0005743!6.19e-10!86;UBERON:0003080!1.11e-09!42;UBERON:0002616!1.54e-09!59;UBERON:0000073!6.92e-09!94;UBERON:0001016!6.92e-09!94;UBERON:0000955!2.38e-08!69;UBERON:0006238!2.38e-08!69;UBERON:0000922!1.81e-07!612;UBERON:0001872!3.60e-07!5;UBERON:0000178!6.25e-07!15;UBERON:0000179!6.25e-07!15;UBERON:0000463!6.25e-07!15;UBERON:0002204!7.59e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.75e-39,76;UBERON:0001474,1.09e-35,82;UBERON:0002390,2.40e-35,98;UBERON:0003061,2.40e-35,98;UBERON:0004765,6.77e-32,90;UBERON:0002193,2.27e-31,108;UBERON:0002405,1.22e-30,93;UBERON:0001434,5.28e-28,100;UBERON:0003081,3.47e-14,203;UBERON:0002204,6.18e-14,167;UBERON:0000926,2.31e-09,315;UBERON:0004120,2.31e-09,315;UBERON:0006603,2.31e-09,315 | |||
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|short_description=p1@LOC389634 | |short_description=p1@LOC389634 | ||
}} | }} |
Latest revision as of 03:54, 25 September 2015
Short description: | p1@LOC389634 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOC389634_5end |
Coexpression cluster: | C45_testicular_choriocarcinoma_H9_teratocarcinoma_Wilms_pancreatic_iPS |
Association with transcript: | 78bp_to_ENST00000536864, ENST00000544461, uc001qul.2_5end |
EntrezGene: | LOC389634 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.97e-78 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.97e-78 | 42 |
defensive cell | 3.68e-67 | 48 |
phagocyte | 3.68e-67 | 48 |
myeloid leukocyte | 5.19e-55 | 72 |
monopoietic cell | 3.13e-52 | 59 |
monocyte | 3.13e-52 | 59 |
monoblast | 3.13e-52 | 59 |
promonocyte | 3.13e-52 | 59 |
macrophage dendritic cell progenitor | 2.64e-50 | 61 |
myeloid lineage restricted progenitor cell | 5.42e-46 | 66 |
granulocyte monocyte progenitor cell | 3.31e-45 | 67 |
myeloid cell | 4.02e-34 | 108 |
common myeloid progenitor | 4.02e-34 | 108 |
leukocyte | 7.72e-31 | 136 |
nongranular leukocyte | 5.80e-29 | 115 |
hematopoietic lineage restricted progenitor cell | 7.61e-24 | 120 |
hematopoietic stem cell | 2.34e-23 | 168 |
hematopoietic cell | 3.14e-23 | 177 |
hematopoietic oligopotent progenitor cell | 1.03e-21 | 161 |
hematopoietic multipotent progenitor cell | 1.03e-21 | 161 |
eosinophil | 1.41e-09 | 2 |
granulocyte | 2.57e-08 | 8 |
embryonic stem cell | 2.13e-07 | 5 |
mesenchymal cell | 2.36e-07 | 354 |
motile cell | 3.40e-07 | 386 |
connective tissue cell | 4.73e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.75e-39 | 76 |
bone element | 1.09e-35 | 82 |
hematopoietic system | 2.40e-35 | 98 |
blood island | 2.40e-35 | 98 |
skeletal element | 6.77e-32 | 90 |
hemolymphoid system | 2.27e-31 | 108 |
immune system | 1.22e-30 | 93 |
skeletal system | 5.28e-28 | 100 |
lateral plate mesoderm | 3.47e-14 | 203 |
musculoskeletal system | 6.18e-14 | 167 |
mesoderm | 2.31e-09 | 315 |
mesoderm-derived structure | 2.31e-09 | 315 |
presumptive mesoderm | 2.31e-09 | 315 |