FFCP PHASE1:Hg19::chr1:221053444..221053473,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:221053444..221053473,+ to FFCP PHASE1:Hg19::chr1:221053444..221053473,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3142 | |EntrezGene=3142 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=4978 | |HGNC=4978 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=244bp_to_AB463713,DQ893305,DQ896761_5end | |||
|cluster_id=chr1:221053444..221053473,+ | |||
|description=CAGE_peak_8_at_HLX_5end | |||
|id=chr1:221053444..221053473,+ | |||
|ontology_enrichment_celltype=CL:0002057!6.12e-15!42;CL:0000860!4.51e-14!45;CL:0000766!2.40e-13!76;CL:0000048!5.31e-13!430;CL:0002194!3.26e-12!63;CL:0000576!3.26e-12!63;CL:0000040!3.26e-12!63;CL:0000559!3.26e-12!63;CL:0000723!5.38e-12!436;CL:0000839!8.76e-12!70;CL:0000557!2.30e-11!71;CL:0002009!2.60e-11!65;CL:0000034!4.12e-11!444;CL:0002320!3.45e-08!365;CL:0000134!5.33e-08!358;CL:0000763!6.71e-08!112;CL:0000049!6.71e-08!112;CL:0000057!9.62e-08!75 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.48e-21;33!CL:0002057;5.48e-21;33!CL:0000473;2.73e-14;39!CL:0000234;2.73e-14;39!CL:0000576;3.74e-10;48!CL:0000569;1.75e-09;4!CL:0000766;2.16e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.47e-17,42;CL:0002057,6.47e-17,42;CL:0000473,3.98e-14,48;CL:0000234,3.98e-14,48;CL:0000766,6.08e-12,72;CL:0002194,1.87e-11,59;CL:0000576,1.87e-11,59;CL:0000040,1.87e-11,59;CL:0000559,1.87e-11,59;CL:0002009,6.52e-11,61;CL:0000839,7.74e-11,66;CL:0000557,1.35e-10,67;CL:0000569,2.50e-09,4;CL:0000011,2.50e-09,4;CL:0000763,2.71e-08,108;CL:0000049,2.71e-08,108;CL:0000048,3.18e-08,427;CL:0000723,6.74e-08,433;CL:0000134,1.48e-07,354;CL:0000034,1.77e-07,441;CL:0002320,3.68e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;2.22e-12;42!CL:0000011;1.75e-09;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!2.15e-16!167;UBERON:0002193!7.01e-13!112;UBERON:0002371!2.35e-11!80;UBERON:0003081!5.24e-11!216;UBERON:0002390!8.33e-11!102;UBERON:0003061!8.33e-11!102;UBERON:0002405!1.86e-10!115;UBERON:0001474!6.69e-10!86;UBERON:0000926!9.36e-09!448;UBERON:0004120!9.36e-09!448;UBERON:0006603!9.36e-09!448;UBERON:0004765!1.09e-08!101;UBERON:0001434!1.09e-08!101;UBERON:0002384!8.34e-08!375;UBERON:0002385!6.60e-07!63;UBERON:0001015!6.60e-07!63;UBERON:0000383!6.60e-07!63 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.02e-09,76;UBERON:0002204,5.31e-09,167;UBERON:0002405,1.01e-08,93;UBERON:0001474,1.31e-08,82;UBERON:0002193,3.17e-08,108;UBERON:0002390,6.90e-08,98;UBERON:0003061,6.90e-08,98;UBERON:0004765,2.24e-07,90;UBERON:0000926,2.51e-07,315;UBERON:0004120,2.51e-07,315;UBERON:0006603,2.51e-07,315;UBERON:0003081,6.57e-07,203;UBERON:0001434,7.82e-07,100 | |||
|phase1_expression=0,0,0.986680828671798,0,1.78784437770915,1.74467704820074,0,1.89515962028049,0.522371256399677,0.245733936501509,0,0,0,0.247532705920093,0,2.01697543935533,2.41077811209591,0,0.975865597581014,0,0.816002764977012,0,0,0,0,0,0,0,0.786728553697808,0.767658796194425,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0.434021741431704,0,0.32389366601898,0,0.726991193897824,0.377875943688809,0.485168122375632,0.929716147622738,4.93401465626191,2.78735733805593,8.63077176966451,4.86705342405291,1.89185783910868,1.37898272294647,0.645484683583826,0,0.941211697713023,1.91034305040492,0.449446968890169,1.83650335422542,0.320929027076094,1.27867425159808,3.95821560224059,6.18337338627059,6.39337125799041,2.61188314765726,3.40431134814684,0,6.78371396193207,6.25779502104242,3.25783267057675,1.81619850790011,0.368277635987565,2.21523671208619,0,0.212604299965044,0.209658645508376,0.44931452458598,0.600707571366025,0.964353520182481,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0.526768169550154,0,0.393010762749165,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0,0.361439152384566,0,0.434539556882471,0,0,0,0,0.087834785693126,0.458426764241994,0,0,0,1.21890816109487,0.531831842075461,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0.550236083880135,0.417989933073621,0.516833518338658,0.35576626268671,0.33472061276467,0,0,0,0.367663080345869,0.81014194788176,0.357198913136319,0.44905874525234,0.112611480483322,0,0,0.916008719652036,0,0,0,0,0.25326102332916,0.529636723252875,0.286836620748814,0.709336764396714,0,0,0.49333509683432,0,0.134710672069688,0.163461903113459,0,0,1.17160715916898,1.5608003841516,0,0.747243402759005,0.587172493218824,0,0,0.408308342509787,0,0.826606249406124,0,0.494533858557114,0.910161361938026,4.31170885089743,0.168336113954066,0.125118519871964,0,0,0,0.45071417671979,0.113432183160021,0.538168907066586,0.213557388818567,1.27159140695737,0.300091096084402,1.8549455262919,0.257640540045629,0,0.337552664482532,0.194874010322397,0.757301322732344,1.10459878370759,3.07127507955743,1.06502877754984,0.604512589365842,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,0,1.39310378409594,0.721879481669586,0.118306800039844,0.168584690078102,0.482022059766964,0.220587945464788,0,0,0,0,0,0,0,0.4115740113314,0,0,0,1.18157981336281,0,0,0.171567810298526,0,0,0,0,0.651616610620649,1.03993478527958,0,0,0.234817388471643,0.144366447761074,0.462985512576611,0.190254152234598,0,0,0,0.702012795417713,0.445893486866185,0,0,0,0,0,0,1.47798971368783,0.088048434013226,0.207328115540772,0,0.50496973370552,0,0,0,0,0,0,0,0,0,0,0.904902010304444,7.15312891703765,0.845302752556,0.26593811658487,0,0.257207374262142,1.41849132023278,0.799266537048298,0.857867961948885,1.08524321078289,0,0,1.06617584622764,0,0.301439377059586,0,0.399891964728228,0,0.502257091432126,0,0,0,0,0.289562613335158,0,0.358121926479791,0,0,0,0,0,0,0,0,0,4.49404214368309,0,2.90090859405225,0.36807447515742,0,0.542530047399471,0.623912584592421,1.24900292158013,0.630809660135739,0.35142424497814,0.300946099727719,0,2.0694614258501,0,0.184369168541703,0.260650843404249,0.391602314925481,0,0.206768026122887,0.431428401637234,0.320182673410333,0,0,0,0.744323423456331,0.306923946576125,0,1.15325234330131,1.02341449813341,0.482561763430822,0,1.07946785661859,0.177561725313127,0.328508624055237,0.519254429183621,0.929683027679674,0,0,0,0.229628896329213,0.182091168006717,1.18011973463482,0,0,0,0,0,1.13733384070897,0,0,1.54227252690289,0.270946437543853,0,0,0,0,0,0,0,0,0,1.03041011647722,0,0,0.574265537996172,0,0,0.386682873168488,0.154048617114644,1.38153307253517,0.275673144969061,0.859361958946189,0.290033387828457,0.596586391912706,0.445160178233687,0,0,0.127612712494584,0.10115778085555,0.464845549297286,0.62962469366128,0,0.924100740528266,0,0,0,0.143124886741991,0.372158369359667,0,0.38126038784765,0.767693373934002,1.71175595213568,1.90921948755562,0.78494864019923,0.179872457583315,1.37268514868027,0.235624804691373,0.404364963146632,0,0,0,0.731140468893853,0,0.545999645631943,0,1.13008116620243,0.551365343546124,0.66343897524122,0.438450885253763,1.73632660280006,0.655894752046633,0,0,0.563391205064483,0.573645408816206,0.0982490410131212,0,0,0.422215270595328,0,0.379473173765715,0,0,0,0,0.659006605437454,0,0,0,0,0.507447609232169,0,0.569647187174163,0.238231775457789,0,1.29694662238543,0,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0.156679895773023,0,0.677167111206413,0.481764225311099,0.80719882876419,0.425846237690326,0,0.614481528616916,0.223676107892416,0.333698283423817,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0.140669416410513,0,0.659215496907038,0,0.597743964753209,0.552567831062295,0,0,0,0.311039587661807,0,0,0,0.789147245095469,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0.457987967009312,0,0,0.627921025580099,0,0,0,0,0,0,0,0,0,0,0,0.442287822516696,3.66618086960175,0,0,0.208843899010911,0,1.6051552945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| ||
|short_description=p8@HLX | |||
}} | }} |
Latest revision as of 07:03, 25 September 2015
Short description: | p8@HLX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_HLX_5end |
Coexpression cluster: | NA |
Association with transcript: | 244bp_to_AB463713, DQ893305, DQ896761_5end |
EntrezGene: | HLX |
HGNC: | 4978 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.47e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.47e-17 | 42 |
defensive cell | 3.98e-14 | 48 |
phagocyte | 3.98e-14 | 48 |
myeloid leukocyte | 6.08e-12 | 72 |
monopoietic cell | 1.87e-11 | 59 |
monocyte | 1.87e-11 | 59 |
monoblast | 1.87e-11 | 59 |
promonocyte | 1.87e-11 | 59 |
macrophage dendritic cell progenitor | 6.52e-11 | 61 |
myeloid lineage restricted progenitor cell | 7.74e-11 | 66 |
granulocyte monocyte progenitor cell | 1.35e-10 | 67 |
cardiac mesenchymal cell | 2.50e-09 | 4 |
migratory trunk neural crest cell | 2.50e-09 | 4 |
myeloid cell | 2.71e-08 | 108 |
common myeloid progenitor | 2.71e-08 | 108 |
multi fate stem cell | 3.18e-08 | 427 |
somatic stem cell | 6.74e-08 | 433 |
mesenchymal cell | 1.48e-07 | 354 |
stem cell | 1.77e-07 | 441 |
connective tissue cell | 3.68e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.02e-09 | 76 |
musculoskeletal system | 5.31e-09 | 167 |
immune system | 1.01e-08 | 93 |
bone element | 1.31e-08 | 82 |
hemolymphoid system | 3.17e-08 | 108 |
hematopoietic system | 6.90e-08 | 98 |
blood island | 6.90e-08 | 98 |
skeletal element | 2.24e-07 | 90 |
mesoderm | 2.51e-07 | 315 |
mesoderm-derived structure | 2.51e-07 | 315 |
presumptive mesoderm | 2.51e-07 | 315 |
lateral plate mesoderm | 6.57e-07 | 203 |
skeletal system | 7.82e-07 | 100 |