FFCP PHASE1:Mm9::chr11:98950590..98950603,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=217169 | |EntrezGene=217169 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2753 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENSMUST00000123303_5end | |association_with_transcript=0bp_to_ENSMUST00000123303_5end | ||
|cluster_id=chr11:98950590..98950603,- | |||
|description=CAGE_peak_3_at_Tns4_5end | |description=CAGE_peak_3_at_Tns4_5end | ||
|id=chr11:98950590..98950603,- | |id=chr11:98950590..98950603,- | ||
|ontology_enrichment_celltype=CL:0002563!1.24e-07!9;CL:0002251!1.24e-07!9;CL:0002076!3.55e-07!15 | |ontology_enrichment_celltype=CL:0002563!1.24e-07!9;CL:0002251!1.24e-07!9;CL:0002076!3.55e-07!15 | ||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.67e-13,15;CL:0002563,6.19e-13,9;CL:0002251,6.19e-13,9;CL:0000066,3.47e-11,25;CL:0000223,2.25e-09,20;CL:0000239,3.52e-09,6;CL:0000677,3.52e-09,6;CL:0000584,3.52e-09,6;CL:0000075,9.59e-08,7 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!5.58e-12!15;UBERON:0001242!1.44e-10!13;UBERON:0000060!1.44e-10!13;UBERON:0001262!1.44e-10!13;UBERON:0004786!1.44e-10!13;UBERON:0005409!2.36e-09!59;UBERON:0004923!7.81e-09!24;UBERON:0000160!4.47e-08!43;UBERON:0003350!1.24e-07!9;UBERON:0004808!1.24e-07!9;UBERON:0001277!1.24e-07!9 | |ontology_enrichment_uberon=UBERON:0000344!5.58e-12!15;UBERON:0001242!1.44e-10!13;UBERON:0000060!1.44e-10!13;UBERON:0001262!1.44e-10!13;UBERON:0004786!1.44e-10!13;UBERON:0005409!2.36e-09!59;UBERON:0004923!7.81e-09!24;UBERON:0000160!4.47e-08!43;UBERON:0003350!1.24e-07!9;UBERON:0004808!1.24e-07!9;UBERON:0001277!1.24e-07!9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,3.38e-19,47;UBERON:0000344,1.29e-18,15;UBERON:0000160,3.62e-18,31;UBERON:0004923,5.37e-16,24;UBERON:0001242,5.45e-16,13;UBERON:0001262,5.45e-16,13;UBERON:0004786,5.45e-16,13;UBERON:0003350,6.19e-13,9;UBERON:0004808,6.19e-13,9;UBERON:0001277,6.19e-13,9;UBERON:0004119,2.13e-11,118;UBERON:0000925,2.13e-11,118;UBERON:0006595,2.13e-11,118;UBERON:0000485,3.15e-10,11;UBERON:0001007,6.04e-10,116;UBERON:0001555,6.04e-10,116;UBERON:0007026,6.04e-10,116;UBERON:0000014,9.42e-09,5;UBERON:0001003,9.42e-09,5;UBERON:0002097,9.42e-09,5;UBERON:0002199,9.42e-09,5;UBERON:0007029,9.42e-09,5;UBERON:0007376,9.42e-09,5;UBERON:0002416,9.42e-09,5;UBERON:0007383,9.42e-09,5;UBERON:0004921,1.18e-08,114;UBERON:0007023,3.01e-08,51;UBERON:0002108,2.62e-07,4;UBERON:0003102,3.74e-07,22 | |||
|phase1_expression=0,9.07336059862339,14.5599756604652,2.72217790176147,4.50806156951712,3.02182689441402,2.56973904655078,0,0,0,0,0,0,0.0874204024189974,0,0,0,0,0,0,0.425216450755349,0,0,5.75972722056264,6.42345986988076,7.46501553349526,2.15380998079537,3.878482188346,16.3420140732482,14.8697776558359,6.43018480900384,0,0,0,3.75507105676657,4.82080471539628,6.53341940039581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26399978118577,0,0,0,0,0,0,0,9.95858788651585,9.37431502257865,12.1325866803548,1.82694207550496,0,0,0,0.304465478312141,0,0,0,0,7.91023896749996,0,0,0,0,0,27.9587641827183,0,0,10.4737392635522,0,0,0,0,0,0,0.173824320192276,0.255715457330331,0,0,0,0,0.252722758433675,0.841767423545896,0,0,0,0.30140963567143,0.748401490664606,0,0.0937017245597288,0.517406741478031,0,0.756424320671277,0.879755620819744,0.219195732427575,0.834141747676794,1.39300866608867,3.2925141825271,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,0,0,0.991256348951394,2.64450566663544,0,0,0,0.201683524623343,0.22237804384487,0,5.21981967698963,0.329397909448022,1.00534083520108,0.397912944082302,0.974820435595601,6.29173586057955,6.48414149624083,8.96135729644652,0,0,0,0,0,0.0701358198903186,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0.195133647857799,0.157635144106191,0,0.159454768657487,0,0,0,0,0,0.491764273019036,4.41498794087572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567760340833074,0.178065603667255,0,0.329940245945071,0,0,0,0.188605079755898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81606049676452,24.9961843619308,0.661585194164886,24.403165435339,8.07322133479528,4.94565984410878,7.04296829618505,8.20704498725306,2.91480836629851,0,0,0,0,0,0,0,0,0,0,1.90934123603023,0,0.813277868507395,1.08005340821801,1.04544148007234,1.74690050996942,0.809186078308924,1.98368293740806,1.04702376793612,24.8860748720242,11.1841076355647,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0.632022241256357,0,0,0,0,0,0.120195449519969,0,0,0.15241361331,0.100826185136841,0.0974578807397524,0.481059208201647,0.116876902181569,8.16229381014761,8.43546622821446,2.51198798506532,7.72269235274761,9.27310051354514,0,1.28206136987086,16.0776284309299,2.00628841614145,0,0,0,0.171853182343688,0,0.755393897389701,0,0,0,0,0.31136204275253,0.399024873401031,0,0.243106717068294,0.209613162627982,0,0,0.206035057238894,0.64183841918363,0,0.50695859978048,0.377252682772152,0.37456602987953,0.256100609619477,0.34461281373368,0,0.231768651889711,0.77163688185482,0,0.147198920134397,0.685738504770831,0.887379030796687,0,0.581385666529314,0.188218760830661,0.25384382367503,0.182927972872773,0.263069711437843,0.543216455383447,0.561142271657738,0.118635018124174,0.0985044823755635,0.409231043169689,0.309873682371932,0.192906610981141,1.49886346762768,0.233931608445408,0.859484216193193,0.382576664137687,0.661774257358546,0.231867835620421 | |phase1_expression=0,9.07336059862339,14.5599756604652,2.72217790176147,4.50806156951712,3.02182689441402,2.56973904655078,0,0,0,0,0,0,0.0874204024189974,0,0,0,0,0,0,0.425216450755349,0,0,5.75972722056264,6.42345986988076,7.46501553349526,2.15380998079537,3.878482188346,16.3420140732482,14.8697776558359,6.43018480900384,0,0,0,3.75507105676657,4.82080471539628,6.53341940039581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26399978118577,0,0,0,0,0,0,0,9.95858788651585,9.37431502257865,12.1325866803548,1.82694207550496,0,0,0,0.304465478312141,0,0,0,0,7.91023896749996,0,0,0,0,0,27.9587641827183,0,0,10.4737392635522,0,0,0,0,0,0,0.173824320192276,0.255715457330331,0,0,0,0,0.252722758433675,0.841767423545896,0,0,0,0.30140963567143,0.748401490664606,0,0.0937017245597288,0.517406741478031,0,0.756424320671277,0.879755620819744,0.219195732427575,0.834141747676794,1.39300866608867,3.2925141825271,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,0,0,0.991256348951394,2.64450566663544,0,0,0,0.201683524623343,0.22237804384487,0,5.21981967698963,0.329397909448022,1.00534083520108,0.397912944082302,0.974820435595601,6.29173586057955,6.48414149624083,8.96135729644652,0,0,0,0,0,0.0701358198903186,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0.195133647857799,0.157635144106191,0,0.159454768657487,0,0,0,0,0,0.491764273019036,4.41498794087572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567760340833074,0.178065603667255,0,0.329940245945071,0,0,0,0.188605079755898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81606049676452,24.9961843619308,0.661585194164886,24.403165435339,8.07322133479528,4.94565984410878,7.04296829618505,8.20704498725306,2.91480836629851,0,0,0,0,0,0,0,0,0,0,1.90934123603023,0,0.813277868507395,1.08005340821801,1.04544148007234,1.74690050996942,0.809186078308924,1.98368293740806,1.04702376793612,24.8860748720242,11.1841076355647,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0.632022241256357,0,0,0,0,0,0.120195449519969,0,0,0.15241361331,0.100826185136841,0.0974578807397524,0.481059208201647,0.116876902181569,8.16229381014761,8.43546622821446,2.51198798506532,7.72269235274761,9.27310051354514,0,1.28206136987086,16.0776284309299,2.00628841614145,0,0,0,0.171853182343688,0,0.755393897389701,0,0,0,0,0.31136204275253,0.399024873401031,0,0.243106717068294,0.209613162627982,0,0,0.206035057238894,0.64183841918363,0,0.50695859978048,0.377252682772152,0.37456602987953,0.256100609619477,0.34461281373368,0,0.231768651889711,0.77163688185482,0,0.147198920134397,0.685738504770831,0.887379030796687,0,0.581385666529314,0.188218760830661,0.25384382367503,0.182927972872773,0.263069711437843,0.543216455383447,0.561142271657738,0.118635018124174,0.0985044823755635,0.409231043169689,0.309873682371932,0.192906610981141,1.49886346762768,0.233931608445408,0.859484216193193,0.382576664137687,0.661774257358546,0.231867835620421 | ||
|short_description=p3@Tns4 | |short_description=p3@Tns4 | ||
}} | }} |
Latest revision as of 03:44, 26 September 2015
Short description: | p3@Tns4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Tns4_5end |
Coexpression cluster: | MCL_coexpression_mm9:2753 |
Association with transcript: | 0bp_to_ENSMUST00000123303_5end |
EntrezGene: | Tns4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.67e-13 | 15 |
intestinal epithelial cell | 6.19e-13 | 9 |
epithelial cell of alimentary canal | 6.19e-13 | 9 |
epithelial cell | 3.47e-11 | 25 |
endodermal cell | 2.25e-09 | 20 |
brush border epithelial cell | 3.52e-09 | 6 |
gut absorptive cell | 3.52e-09 | 6 |
enterocyte | 3.52e-09 | 6 |
columnar/cuboidal epithelial cell | 9.59e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 3.38e-19 | 47 |
mucosa | 1.29e-18 | 15 |
intestine | 3.62e-18 | 31 |
organ component layer | 5.37e-16 | 24 |
intestinal mucosa | 5.45e-16 | 13 |
wall of intestine | 5.45e-16 | 13 |
gastrointestinal system mucosa | 5.45e-16 | 13 |
epithelium of mucosa | 6.19e-13 | 9 |
gastrointestinal system epithelium | 6.19e-13 | 9 |
intestinal epithelium | 6.19e-13 | 9 |
endoderm-derived structure | 2.13e-11 | 118 |
endoderm | 2.13e-11 | 118 |
presumptive endoderm | 2.13e-11 | 118 |
simple columnar epithelium | 3.15e-10 | 11 |
digestive system | 6.04e-10 | 116 |
digestive tract | 6.04e-10 | 116 |
primitive gut | 6.04e-10 | 116 |
zone of skin | 9.42e-09 | 5 |
skin epidermis | 9.42e-09 | 5 |
skin of body | 9.42e-09 | 5 |
integument | 9.42e-09 | 5 |
surface | 9.42e-09 | 5 |
outer epithelium | 9.42e-09 | 5 |
integumental system | 9.42e-09 | 5 |
enveloping layer of ectoderm | 9.42e-09 | 5 |
subdivision of digestive tract | 1.18e-08 | 114 |
adult organism | 3.01e-08 | 51 |
small intestine | 2.62e-07 | 4 |
surface structure | 3.74e-07 | 22 |