FFCP PHASE1:Mm9::chr10:85954606..85954627,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=27204 | |EntrezGene=27204 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q9QZA3,D3Z620 | |UniProt=Q9QZA3,D3Z620 | ||
|association_with_transcript=14bp_to_ENSMUST00000123783,ENSMUST00000145864,uc007gnp.1,uc007gns.1_5end | |association_with_transcript=14bp_to_ENSMUST00000123783,ENSMUST00000145864,uc007gnp.1,uc007gns.1_5end | ||
|cluster_id=chr10:85954606..85954627,- | |||
|description=CAGE_peak_4_at_Syn3_5end | |description=CAGE_peak_4_at_Syn3_5end | ||
|id=chr10:85954606..85954627,- | |id=chr10:85954606..85954627,- | ||
|ontology_enrichment_celltype=CL:0000540!5.62e-21!33;CL:0000047!5.62e-21!33;CL:0000031!5.62e-21!33;CL:0000404!5.62e-21!33;CL:0000117!4.39e-18!23;CL:0000337!4.39e-18!23;CL:0000393!8.89e-16!39;CL:0000211!8.89e-16!39;CL:0002319!4.44e-14!43;CL:0000221!1.77e-13!44;CL:0000133!1.77e-13!44;CL:0000055!1.93e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.20e-22,23;CL:0000337,3.20e-22,23;CL:0000540,1.59e-21,33;CL:0000047,1.59e-21,33;CL:0000031,1.59e-21,33;CL:0000404,1.59e-21,33;CL:0000393,4.78e-17,39;CL:0000211,4.78e-17,39;CL:0002319,8.99e-15,43;CL:0000221,2.86e-14,44;CL:0000133,2.86e-14,44;CL:0002609,3.47e-08,6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.66e-18!73;UBERON:0005743!2.66e-18!73;UBERON:0000073!2.62e-17!75;UBERON:0001016!2.62e-17!75;UBERON:0004121!1.77e-15!102;UBERON:0000924!1.77e-15!102;UBERON:0006601!1.77e-15!102;UBERON:0002346!2.03e-14!71;UBERON:0003075!2.03e-14!71;UBERON:0007284!2.03e-14!71;UBERON:0002020!7.87e-14!34;UBERON:0003056!1.18e-11!49;UBERON:0001049!1.45e-11!52;UBERON:0005068!1.45e-11!52;UBERON:0006241!1.45e-11!52;UBERON:0007135!1.45e-11!52;UBERON:0000033!3.17e-11!63;UBERON:0002791!7.91e-10!29;UBERON:0003528!7.91e-10!29;UBERON:0001893!7.91e-10!29;UBERON:0000955!1.30e-09!50;UBERON:0006238!1.30e-09!50;UBERON:0003080!5.20e-09!40;UBERON:0002616!5.54e-09!49;UBERON:0002780!1.17e-08!39;UBERON:0001890!1.17e-08!39;UBERON:0006240!1.17e-08!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.50e-13,34;UBERON:0001017,4.98e-11,73;UBERON:0001016,1.66e-10,75;UBERON:0004121,3.13e-09,95;UBERON:0000924,3.13e-09,95;UBERON:0006601,3.13e-09,95;UBERON:0001948,1.05e-08,5;UBERON:0002315,1.05e-08,5;UBERON:0003528,7.67e-08,29;UBERON:0002791,7.67e-08,29;UBERON:0001893,7.67e-08,29;UBERON:0002346,9.14e-08,64;UBERON:0003075,9.14e-08,64;UBERON:0007284,9.14e-08,64;UBERON:0000073,1.54e-07,54;UBERON:0002240,4.03e-07,6;UBERON:0005174,4.03e-07,6;UBERON:0001137,4.03e-07,6 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198581902401771,0.783599367416806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.67644320836673,7.93486468908049,6.33831403506179,0,0,0,0,0,0,0.384218305321555,1.65903379693564,1.35005938331691,1.26194976810829,5.14171771926846,3.3130281142742,5.02212276781312,3.45043695665651,4.5960939330501,1.10115880999389,0.383062014255563,1.0752457327937,10.0233578674947,9.14876436024097,13.022834263919,0.558365998002762,1.12552522006336,0.763991238884051,6.18720029494702,10.9626194215309,8.38797506213853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.608930956624282,0,1.05505848386836,0.823120949949934,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.599162557619291,0,7.03664371832041,0.173824320192276,0.255715457330331,0.41557608911912,0.324482526135515,0.101839363850316,0,0,0,0.130120442962704,0.919608417733892,0.360124259610698,1.35634336052144,1.42876648217788,1.5373646434182,1.12442069471675,0.258703370739016,0.215567992932842,0,0,0.219195732427575,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68231958851302,3.08713837137853,0,0,0.213288250535234,0,0,0.605050573870028,0.22237804384487,0.190225626112559,0,0,0,0,0,0,0,0,0.189667900953082,0.228497025219458,0,0.203651327845314,0,0.0701358198903186,0.189709611372772,0.147610147979602,0,0,0,0,0.393117990226406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,0,0,0,0.631016438832513,0,2.36965737506079,0.477937595905104,1.11399337041197,1.13230612315533,1.21443210502468,1.16902343164525,0.790575555893047,4.17717711348349,0,0,0,0,0,0,0,0.188605079755898,0,0,0.516856586336442,0,0,0,0,0,0,0.18006109403131,0.388076051348264,0.643011105094777,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0,0.108005340821801,0,0.436725127492355,0,0,0,0,0,0,0.149516546043979,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.920650473014354,1.71868654031819,0.171853182343688,0,0,1.35004500046361,0.45032120322422,0.453142408984205,0.51776031175182,0.103787347584177,0.399024873401031,1.02440163452481,1.45864030240976,1.88651846365184,1.83843508450014,1.77797382241292,3.09052585858341,4.1719497246936,2.27427490587418,0.50695859978048,2.07488975524684,1.591905626988,1.21647789569252,1.37845125493472,0.952587382566147,1.85414921511769,2.31491064556446,0.412085900803307,3.97437084362873,2.40008476669791,1.4198064492747,1.66905332963125,2.76158191601424,1.50575008664529,1.77690676572521,2.74391959309159,1.57841826862706,1.35804113845862,3.36685362994643,1.18635018124174,2.1670986122624,1.63692417267876,1.54936841185966,0.771626443924566,3.49734809113124,2.33931608445408,1.71896843238639,0.191288332068843,0,0 | |phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198581902401771,0.783599367416806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.67644320836673,7.93486468908049,6.33831403506179,0,0,0,0,0,0,0.384218305321555,1.65903379693564,1.35005938331691,1.26194976810829,5.14171771926846,3.3130281142742,5.02212276781312,3.45043695665651,4.5960939330501,1.10115880999389,0.383062014255563,1.0752457327937,10.0233578674947,9.14876436024097,13.022834263919,0.558365998002762,1.12552522006336,0.763991238884051,6.18720029494702,10.9626194215309,8.38797506213853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.608930956624282,0,1.05505848386836,0.823120949949934,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.599162557619291,0,7.03664371832041,0.173824320192276,0.255715457330331,0.41557608911912,0.324482526135515,0.101839363850316,0,0,0,0.130120442962704,0.919608417733892,0.360124259610698,1.35634336052144,1.42876648217788,1.5373646434182,1.12442069471675,0.258703370739016,0.215567992932842,0,0,0.219195732427575,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68231958851302,3.08713837137853,0,0,0.213288250535234,0,0,0.605050573870028,0.22237804384487,0.190225626112559,0,0,0,0,0,0,0,0,0.189667900953082,0.228497025219458,0,0.203651327845314,0,0.0701358198903186,0.189709611372772,0.147610147979602,0,0,0,0,0.393117990226406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,0,0,0,0.631016438832513,0,2.36965737506079,0.477937595905104,1.11399337041197,1.13230612315533,1.21443210502468,1.16902343164525,0.790575555893047,4.17717711348349,0,0,0,0,0,0,0,0.188605079755898,0,0,0.516856586336442,0,0,0,0,0,0,0.18006109403131,0.388076051348264,0.643011105094777,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0,0.108005340821801,0,0.436725127492355,0,0,0,0,0,0,0.149516546043979,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.920650473014354,1.71868654031819,0.171853182343688,0,0,1.35004500046361,0.45032120322422,0.453142408984205,0.51776031175182,0.103787347584177,0.399024873401031,1.02440163452481,1.45864030240976,1.88651846365184,1.83843508450014,1.77797382241292,3.09052585858341,4.1719497246936,2.27427490587418,0.50695859978048,2.07488975524684,1.591905626988,1.21647789569252,1.37845125493472,0.952587382566147,1.85414921511769,2.31491064556446,0.412085900803307,3.97437084362873,2.40008476669791,1.4198064492747,1.66905332963125,2.76158191601424,1.50575008664529,1.77690676572521,2.74391959309159,1.57841826862706,1.35804113845862,3.36685362994643,1.18635018124174,2.1670986122624,1.63692417267876,1.54936841185966,0.771626443924566,3.49734809113124,2.33931608445408,1.71896843238639,0.191288332068843,0,0 | ||
|short_description=p4@Syn3 | |short_description=p4@Syn3 | ||
}} | }} |
Latest revision as of 12:39, 26 September 2015
Short description: | p4@Syn3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Syn3_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 14bp_to_ENSMUST00000123783, ENSMUST00000145864, uc007gnp.1, uc007gns.1_5end |
EntrezGene: | Syn3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.20e-22 | 23 |
neuroblast (sensu Vertebrata) | 3.20e-22 | 23 |
neuron | 1.59e-21 | 33 |
neuronal stem cell | 1.59e-21 | 33 |
neuroblast | 1.59e-21 | 33 |
electrically signaling cell | 1.59e-21 | 33 |
electrically responsive cell | 4.78e-17 | 39 |
electrically active cell | 4.78e-17 | 39 |
neural cell | 8.99e-15 | 43 |
ectodermal cell | 2.86e-14 | 44 |
neurectodermal cell | 2.86e-14 | 44 |
neuron of cerebral cortex | 3.47e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
gray matter | 5.50e-13 | 34 |
central nervous system | 4.98e-11 | 73 |
nervous system | 1.66e-10 | 75 |
ectoderm-derived structure | 3.13e-09 | 95 |
ectoderm | 3.13e-09 | 95 |
presumptive ectoderm | 3.13e-09 | 95 |
regional part of spinal cord | 1.05e-08 | 5 |
gray matter of spinal cord | 1.05e-08 | 5 |
brain grey matter | 7.67e-08 | 29 |
regional part of telencephalon | 7.67e-08 | 29 |
telencephalon | 7.67e-08 | 29 |
neurectoderm | 9.14e-08 | 64 |
neural plate | 9.14e-08 | 64 |
presumptive neural plate | 9.14e-08 | 64 |
regional part of nervous system | 1.54e-07 | 54 |
spinal cord | 4.03e-07 | 6 |
dorsal region element | 4.03e-07 | 6 |
dorsum | 4.03e-07 | 6 |