FFCP PHASE1:Mm9::chr5:115880589..115880638,+: Difference between revisions
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{{FFCP|EntrezGene=17690|HGNC=|MCL_coexpression_id=57|UniProt=|association_with_transcript=0bp_to_ENSMUST00000131079_5end|description=CAGE_peak_6_at_Msi1_5end|id=chr5:115880589..115880638,+|ontology_enrichment_celltype=CL:0000221!9.24e-11!44;CL:0000133!9.24e-11!44;CL:0002319!2.61e-10!43;CL:0000055!1.83e-08!50;CL:0000540!1.81e-07!33;CL:0000047!1.81e-07!33;CL:0000031!1.81e-07!33;CL:0000404!1.81e-07!33;CL:0002321!5.22e-07!70;CL:0000220!5.22e-07!70|ontology_enrichment_celltype_v019_2=CL:0002453,9.93e-11,8;CL:0000333,2.37e-08,10;CL:0000095,2.37e-08,10;CL:0000243,2.37e-08,10;CL:0000123,2.37e-08,10;CL:0000125,2.37e-08,10;CL:0000030,2.37e-08,10;CL:0000339,2.37e-08,10;CL:0000128,4.83e-08,6;CL:0000126,4.83e-08,6;CL:0000127,4.83e-08,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!4.15e-21!102;UBERON:0000924!4.15e-21!102;UBERON:0006601!4.15e-21!102;UBERON:0000033!2.31e-19!63;UBERON:0001017!5.42e-19!73;UBERON:0005743!5.42e-19!73;UBERON:0000073!1.67e-18!75;UBERON:0001016!1.67e-18!75;UBERON:0002346!1.73e-17!71;UBERON:0003075!1.73e-17!71;UBERON:0007284!1.73e-17!71;UBERON:0003056!4.59e-16!49;UBERON:0000955!2.42e-13!50;UBERON:0006238!2.42e-13!50;UBERON:0002616!9.76e-13!49;UBERON:0001049!1.15e-11!52;UBERON:0005068!1.15e-11!52;UBERON:0006241!1.15e-11!52;UBERON:0007135!1.15e-11!52;UBERON:0003080!7.54e-10!40;UBERON:0002780!2.79e-09!39;UBERON:0001890!2.79e-09!39;UBERON:0006240!2.79e-09!39;UBERON:0007811!2.95e-09!86;UBERON:0000970!1.62e-08!9;UBERON:0000019!1.62e-08!9;UBERON:0000047!1.62e-08!9;UBERON:0004088!1.62e-08!9;UBERON:0002104!1.62e-08!9;UBERON:0001456!1.62e-08!9;UBERON:0003072!1.62e-08!9;UBERON:0003071!1.62e-08!9;UBERON:0004128!1.62e-08!9;UBERON:0000020!7.13e-08!12;UBERON:0001032!7.13e-08!12;UBERON:0004456!7.13e-08!12;UBERON:0000153!1.02e-07!94;UBERON:0000473!3.96e-07!14;UBERON:0005085!7.12e-07!13|ontology_enrichment_uberon_v019_2=UBERON:0000970,2.01e-18,9;UBERON:0000019,2.01e-18,9;UBERON:0000047,2.01e-18,9;UBERON:0010312,2.01e-18,9;UBERON:0004088,2.01e-18,9;UBERON:0002104,2.01e-18,9;UBERON:0001456,2.01e-18,9;UBERON:0003072,2.01e-18,9;UBERON:0004128,2.01e-18,9;UBERON:0003071,2.01e-18,9;UBERON:0001444,1.11e-14,11;UBERON:0000020,2.82e-13,12;UBERON:0001032,2.82e-13,12;UBERON:0004456,2.82e-13,12;UBERON:0004121,2.10e-12,95;UBERON:0000924,2.10e-12,95;UBERON:0006601,2.10e-12,95;UBERON:0000033,4.32e-12,13;UBERON:0005085,4.32e-12,13;UBERON:0000473,3.20e-10,14;UBERON:0002346,4.19e-10,64;UBERON:0003075,4.19e-10,64;UBERON:0007284,4.19e-10,64;UBERON:0003056,1.37e-09,49;UBERON:0003135,2.08e-09,15;UBERON:0003101,1.06e-08,16;UBERON:0000079,1.06e-08,16;UBERON:0010371,3.70e-08,73;UBERON:0004176,4.49e-08,17;UBERON:0009196,4.49e-08,17;UBERON:0009117,4.49e-08,17;UBERON:0000991,1.61e-07,18;UBERON:0005564,1.61e-07,18;UBERON:0001017,4.15e-07,73;UBERON:0001016,8.79e-07,75|phase1_expression=0.480446541314382,0.697950815278722,0,0,0,0.503637815735669,2.56973904655078,0,0,0,0,0,0,0,0,0,0,0,0,0,1.78590909317247,0,0,0.47997726838022,0.22940928106717,0.57423196411502,0,1.29282739611533,0.190023419456374,0,0.443461021310609,0,0,0,1.44425809875637,1.99481574430191,2.24586291888606,0,0,0,0,0,0,0.125896817975577,0,0.183546752161682,0,6.32272953503295,3.29529274101708,3.11087838518853,1.25987779462826,5.75010257459886,0,0,0,0.257259436035947,0,0,1.21389876515759,1.05798195854407,0,1.0165335962074,0,0,0.988866362566974,0,1.19840044207362,1.92109152660777,0.311068836925433,0.270011876663381,0.841299845405528,0,0.441737081903227,0.857435594504678,0.575072826109418,0,2.20231761998777,0.766124028511126,0.307213066512487,0.791317726381163,1.18933936683133,1.04182674111352,0.837548997004143,1.12552522006336,0.30559649555362,0,0.284743361598206,0.372798891650601,0,0.226714680320357,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0.985903938436763,0,0,0,0,0,0,0.11418387971906,0,0.148442139064825,0.173485326766136,0,0.230615497256059,0,0.23517741427141,0,0,0,0,0.323533699894818,0.441683036920787,0.969750506270444,0,0.585561594023094,1.04723353406728,0.766371165625774,0,0,0,2.39665023047716,0.457500602818626,0,0.521472960576829,0.511430914660661,1.66230435647648,0.486723789203273,0.203678727700633,0.124406970610093,0,7.78634866779954,6.37590170517248,5.28774840196988,4.68161537493908,4.82255417074288,7.00775941258677,8.96796041993949,6.09061209638237,23.0245999957724,0,0,0,0,0,0.348252166522167,0.205782136407943,0.199034266818493,0,0,0,0,0,0.180062061461015,0,0,0,0.232533944750408,0,0.116765342367169,0,0,0,0.146199987425332,0,0,0.420579897128254,0.514523061896422,0.330418782983798,0,0.426576501070468,0,0.38660238396628,0.201683524623343,0,0.190225626112559,0,0.164698954724011,0.251335208800269,0.397912944082302,0.19496408711912,0,0,0.199141273254367,0.569003702859245,0.571242563048644,0,0,0,0.350679099451593,0.442655759869801,0,0,0.246794327843601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80275294993896,0.937693492737625,0,0,0.631016438832513,0.390438744296638,1.72338718186239,0.716906393857656,1.55959071857676,0.283076530788832,0.809621403349789,0.292255857911312,0,2.24924921495265,0.567760340833074,0,0.162886959353576,0.494910368917606,0,0,0,0,0,0,0,0,0,0,0,0,4.42571487479924,0.900305470156551,1.16422815404479,0.643011105094777,0,0.356737635204141,0.493647061806363,0.913394847343798,0,0,0.220528398054962,0,0,0.180938774784468,0.596861720015682,0.328281799490123,0,2.22510362412612,0,0,0,0.188368457004691,0,0,0,0,0,0,0.790839983952838,0.203319467126849,0.108005340821801,0,0,0,0,0.523511883968059,0,0,4.50954350947352,0.747582730219894,0.827292452285488,4.66682852025714,3.61647505737647,1.520605129417,2.11243029562357,5.33837977860195,8.703325587334,7.00593950395418,6.62469014393091,0,0,0,0,0,0.198681354781265,0,0,0,0,0,0,0,0.116876902181569,0,0,0,0,0,0.187682475451182,0,0,0,0.564751842617067,1.38097570952153,0,0.171853182343688,0.685082519770642,0,0.675022500231806,0.900642406448441,0.453142408984205,0,1.55681021376265,1.59609949360412,0,0,0.209613162627982,0.183843508450014,0.222246727801615,0.206035057238894,0,0,0.25347929989024,0.188626341386076,0,0.0640251524048693,0.34461281373368,0,0,0,0.412085900803307,0,0,0,0.238436189947321,0.145346416632329,0.282328141245992,0,0.182927972872773,0,0.135804113845862,0,0,0.0985044823755635,0.409231043169689,0,0,0.249810577937946,0.233931608445408,0.429742108096597,0,0,0.463735671240843|short_description=p6@Msi1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=17690 | |||
|HGNC= | |||
|MCL_coexpression_id=57 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000131079_5end | |||
|cluster_id=chr5:115880589..115880638,+ | |||
|description=CAGE_peak_6_at_Msi1_5end | |||
|id=chr5:115880589..115880638,+ | |||
|ontology_enrichment_celltype=CL:0000221!9.24e-11!44;CL:0000133!9.24e-11!44;CL:0002319!2.61e-10!43;CL:0000055!1.83e-08!50;CL:0000540!1.81e-07!33;CL:0000047!1.81e-07!33;CL:0000031!1.81e-07!33;CL:0000404!1.81e-07!33;CL:0002321!5.22e-07!70;CL:0000220!5.22e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002453,9.93e-11,8;CL:0000333,2.37e-08,10;CL:0000095,2.37e-08,10;CL:0000243,2.37e-08,10;CL:0000123,2.37e-08,10;CL:0000125,2.37e-08,10;CL:0000030,2.37e-08,10;CL:0000339,2.37e-08,10;CL:0000128,4.83e-08,6;CL:0000126,4.83e-08,6;CL:0000127,4.83e-08,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!4.15e-21!102;UBERON:0000924!4.15e-21!102;UBERON:0006601!4.15e-21!102;UBERON:0000033!2.31e-19!63;UBERON:0001017!5.42e-19!73;UBERON:0005743!5.42e-19!73;UBERON:0000073!1.67e-18!75;UBERON:0001016!1.67e-18!75;UBERON:0002346!1.73e-17!71;UBERON:0003075!1.73e-17!71;UBERON:0007284!1.73e-17!71;UBERON:0003056!4.59e-16!49;UBERON:0000955!2.42e-13!50;UBERON:0006238!2.42e-13!50;UBERON:0002616!9.76e-13!49;UBERON:0001049!1.15e-11!52;UBERON:0005068!1.15e-11!52;UBERON:0006241!1.15e-11!52;UBERON:0007135!1.15e-11!52;UBERON:0003080!7.54e-10!40;UBERON:0002780!2.79e-09!39;UBERON:0001890!2.79e-09!39;UBERON:0006240!2.79e-09!39;UBERON:0007811!2.95e-09!86;UBERON:0000970!1.62e-08!9;UBERON:0000019!1.62e-08!9;UBERON:0000047!1.62e-08!9;UBERON:0004088!1.62e-08!9;UBERON:0002104!1.62e-08!9;UBERON:0001456!1.62e-08!9;UBERON:0003072!1.62e-08!9;UBERON:0003071!1.62e-08!9;UBERON:0004128!1.62e-08!9;UBERON:0000020!7.13e-08!12;UBERON:0001032!7.13e-08!12;UBERON:0004456!7.13e-08!12;UBERON:0000153!1.02e-07!94;UBERON:0000473!3.96e-07!14;UBERON:0005085!7.12e-07!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,2.01e-18,9;UBERON:0000019,2.01e-18,9;UBERON:0000047,2.01e-18,9;UBERON:0010312,2.01e-18,9;UBERON:0004088,2.01e-18,9;UBERON:0002104,2.01e-18,9;UBERON:0001456,2.01e-18,9;UBERON:0003072,2.01e-18,9;UBERON:0004128,2.01e-18,9;UBERON:0003071,2.01e-18,9;UBERON:0001444,1.11e-14,11;UBERON:0000020,2.82e-13,12;UBERON:0001032,2.82e-13,12;UBERON:0004456,2.82e-13,12;UBERON:0004121,2.10e-12,95;UBERON:0000924,2.10e-12,95;UBERON:0006601,2.10e-12,95;UBERON:0000033,4.32e-12,13;UBERON:0005085,4.32e-12,13;UBERON:0000473,3.20e-10,14;UBERON:0002346,4.19e-10,64;UBERON:0003075,4.19e-10,64;UBERON:0007284,4.19e-10,64;UBERON:0003056,1.37e-09,49;UBERON:0003135,2.08e-09,15;UBERON:0003101,1.06e-08,16;UBERON:0000079,1.06e-08,16;UBERON:0010371,3.70e-08,73;UBERON:0004176,4.49e-08,17;UBERON:0009196,4.49e-08,17;UBERON:0009117,4.49e-08,17;UBERON:0000991,1.61e-07,18;UBERON:0005564,1.61e-07,18;UBERON:0001017,4.15e-07,73;UBERON:0001016,8.79e-07,75 | |||
|phase1_expression=0.480446541314382,0.697950815278722,0,0,0,0.503637815735669,2.56973904655078,0,0,0,0,0,0,0,0,0,0,0,0,0,1.78590909317247,0,0,0.47997726838022,0.22940928106717,0.57423196411502,0,1.29282739611533,0.190023419456374,0,0.443461021310609,0,0,0,1.44425809875637,1.99481574430191,2.24586291888606,0,0,0,0,0,0,0.125896817975577,0,0.183546752161682,0,6.32272953503295,3.29529274101708,3.11087838518853,1.25987779462826,5.75010257459886,0,0,0,0.257259436035947,0,0,1.21389876515759,1.05798195854407,0,1.0165335962074,0,0,0.988866362566974,0,1.19840044207362,1.92109152660777,0.311068836925433,0.270011876663381,0.841299845405528,0,0.441737081903227,0.857435594504678,0.575072826109418,0,2.20231761998777,0.766124028511126,0.307213066512487,0.791317726381163,1.18933936683133,1.04182674111352,0.837548997004143,1.12552522006336,0.30559649555362,0,0.284743361598206,0.372798891650601,0,0.226714680320357,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0.985903938436763,0,0,0,0,0,0,0.11418387971906,0,0.148442139064825,0.173485326766136,0,0.230615497256059,0,0.23517741427141,0,0,0,0,0.323533699894818,0.441683036920787,0.969750506270444,0,0.585561594023094,1.04723353406728,0.766371165625774,0,0,0,2.39665023047716,0.457500602818626,0,0.521472960576829,0.511430914660661,1.66230435647648,0.486723789203273,0.203678727700633,0.124406970610093,0,7.78634866779954,6.37590170517248,5.28774840196988,4.68161537493908,4.82255417074288,7.00775941258677,8.96796041993949,6.09061209638237,23.0245999957724,0,0,0,0,0,0.348252166522167,0.205782136407943,0.199034266818493,0,0,0,0,0,0.180062061461015,0,0,0,0.232533944750408,0,0.116765342367169,0,0,0,0.146199987425332,0,0,0.420579897128254,0.514523061896422,0.330418782983798,0,0.426576501070468,0,0.38660238396628,0.201683524623343,0,0.190225626112559,0,0.164698954724011,0.251335208800269,0.397912944082302,0.19496408711912,0,0,0.199141273254367,0.569003702859245,0.571242563048644,0,0,0,0.350679099451593,0.442655759869801,0,0,0.246794327843601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80275294993896,0.937693492737625,0,0,0.631016438832513,0.390438744296638,1.72338718186239,0.716906393857656,1.55959071857676,0.283076530788832,0.809621403349789,0.292255857911312,0,2.24924921495265,0.567760340833074,0,0.162886959353576,0.494910368917606,0,0,0,0,0,0,0,0,0,0,0,0,4.42571487479924,0.900305470156551,1.16422815404479,0.643011105094777,0,0.356737635204141,0.493647061806363,0.913394847343798,0,0,0.220528398054962,0,0,0.180938774784468,0.596861720015682,0.328281799490123,0,2.22510362412612,0,0,0,0.188368457004691,0,0,0,0,0,0,0.790839983952838,0.203319467126849,0.108005340821801,0,0,0,0,0.523511883968059,0,0,4.50954350947352,0.747582730219894,0.827292452285488,4.66682852025714,3.61647505737647,1.520605129417,2.11243029562357,5.33837977860195,8.703325587334,7.00593950395418,6.62469014393091,0,0,0,0,0,0.198681354781265,0,0,0,0,0,0,0,0.116876902181569,0,0,0,0,0,0.187682475451182,0,0,0,0.564751842617067,1.38097570952153,0,0.171853182343688,0.685082519770642,0,0.675022500231806,0.900642406448441,0.453142408984205,0,1.55681021376265,1.59609949360412,0,0,0.209613162627982,0.183843508450014,0.222246727801615,0.206035057238894,0,0,0.25347929989024,0.188626341386076,0,0.0640251524048693,0.34461281373368,0,0,0,0.412085900803307,0,0,0,0.238436189947321,0.145346416632329,0.282328141245992,0,0.182927972872773,0,0.135804113845862,0,0,0.0985044823755635,0.409231043169689,0,0,0.249810577937946,0.233931608445408,0.429742108096597,0,0,0.463735671240843 | |||
|short_description=p6@Msi1 | |||
}} |
Latest revision as of 17:24, 1 October 2015
Short description: | p6@Msi1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Msi1_5end |
Coexpression cluster: | MCL_coexpression_mm9:57 |
Association with transcript: | 0bp_to_ENSMUST00000131079_5end |
EntrezGene: | Msi1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte precursor cell | 9.93e-11 | 8 |
migratory neural crest cell | 2.37e-08 | 10 |
neuron associated cell | 2.37e-08 | 10 |
glial cell (sensu Vertebrata) | 2.37e-08 | 10 |
neuron associated cell (sensu Vertebrata) | 2.37e-08 | 10 |
glial cell | 2.37e-08 | 10 |
glioblast | 2.37e-08 | 10 |
glioblast (sensu Vertebrata) | 2.37e-08 | 10 |
oligodendrocyte | 4.83e-08 | 6 |
macroglial cell | 4.83e-08 | 6 |
astrocyte | 4.83e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
eye | 2.01e-18 | 9 |
camera-type eye | 2.01e-18 | 9 |
simple eye | 2.01e-18 | 9 |
immature eye | 2.01e-18 | 9 |
ocular region | 2.01e-18 | 9 |
visual system | 2.01e-18 | 9 |
face | 2.01e-18 | 9 |
optic cup | 2.01e-18 | 9 |
optic vesicle | 2.01e-18 | 9 |
eye primordium | 2.01e-18 | 9 |
subdivision of head | 1.11e-14 | 11 |
sense organ | 2.82e-13 | 12 |
sensory system | 2.82e-13 | 12 |
entire sense organ system | 2.82e-13 | 12 |
ectoderm-derived structure | 2.10e-12 | 95 |
ectoderm | 2.10e-12 | 95 |
presumptive ectoderm | 2.10e-12 | 95 |
head | 4.32e-12 | 13 |
ectodermal placode | 4.32e-12 | 13 |
testis | 3.20e-10 | 14 |
neurectoderm | 4.19e-10 | 64 |
neural plate | 4.19e-10 | 64 |
presumptive neural plate | 4.19e-10 | 64 |
pre-chordal neural plate | 1.37e-09 | 49 |
male reproductive organ | 2.08e-09 | 15 |
male organism | 1.06e-08 | 16 |
male reproductive system | 1.06e-08 | 16 |
ecto-epithelium | 3.70e-08 | 73 |
external genitalia | 4.49e-08 | 17 |
indifferent external genitalia | 4.49e-08 | 17 |
indifferent gonad | 4.49e-08 | 17 |
gonad | 1.61e-07 | 18 |
gonad primordium | 1.61e-07 | 18 |
central nervous system | 4.15e-07 | 73 |
nervous system | 8.79e-07 | 75 |