FF:11777-124A4: Difference between revisions

Latest revision as of 18:19, 4 June 2020

Name:	CD41+ megakaryocyte control, donor2
Species:	Mouse (Mus musculus)
Library ID:	CNhs13214
Sample type:	primary cells
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bone marrow
dev stage	NA
sex	NA
age	NA
cell type	megakaryocyte
cell line	NA
company	NA
collaboration	Hozumi Motohashi (Tohoku University Graduate School of Medicine)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	PBS-2
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005393

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13214		CAGE		DRX008801		DRR009673

Accession ID Mm9

Library id		BAM		CTSS
CNhs13214		DRZ001098		DRZ002483

Accession ID Mm10

Library id		BAM		CTSS
CNhs13214		DRZ012448		DRZ013833

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs13214

0	0
1	0
10	0
100	0
1000	-0.00757
1001	-0.0631
1002	-0.116
1003	-0.175
1004	0
1005	0.0558
1006	-0.143
1007	-0.164
1008	0
1009	-0.19
101	0.157
1010	0
1011	0.0697
1012	0.00527
1013	-0.161
1014	-0.0874
1015	-0.143
1016	-0.594
1017	0
1018	0
1019	0
102	0.15
1020	0.105
1021	0.192
1022	-0.136
1023	0.0558
1024	-0.14
1025	-0.0611
1026	0
1027	-0.048
1028	0
1029	-0.121
103	-0.0887
1030	0.504
1031	-0.855
1032	-0.599
1033	0.0455
1034	0
1035	0
1036	0.256
1037	0
1038	-0.203
1039	-0.0349
104	0
1040	-0.121
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13214

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	8.7005e-6
MA0003.1	MA0003.1	0.359
MA0004.1	MA0004.1	0.123
MA0006.1	MA0006.1	0.762
MA0007.1	MA0007.1	0.854
MA0009.1	MA0009.1	0.704
MA0014.1	MA0014.1	0.784
MA0017.1	MA0017.1	0.402
MA0018.2	MA0018.2	0.896
MA0019.1	MA0019.1	0.351
MA0024.1	MA0024.1	0.992
MA0025.1	MA0025.1	0.197
MA0027.1	MA0027.1	0.683
MA0028.1	MA0028.1	8.50536e-6
MA0029.1	MA0029.1	0.217
MA0030.1	MA0030.1	0.213
MA0031.1	MA0031.1	0.738
MA0035.2	MA0035.2	0.792
MA0038.1	MA0038.1	0.492
MA0039.2	MA0039.2	0.764
MA0040.1	MA0040.1	0.627
MA0041.1	MA0041.1	0.105
MA0042.1	MA0042.1	0.676
MA0043.1	MA0043.1	0.337
MA0046.1	MA0046.1	8.27038e-10
MA0047.2	MA0047.2	0.808
MA0048.1	MA0048.1	0.417
MA0050.1	MA0050.1	5.91297e-13
MA0051.1	MA0051.1	1.34668e-7
MA0052.1	MA0052.1	0.0095
MA0055.1	MA0055.1	0.579
MA0057.1	MA0057.1	0.945
MA0058.1	MA0058.1	0.15
MA0059.1	MA0059.1	0.0437
MA0060.1	MA0060.1	0.0139
MA0061.1	MA0061.1	8.62155e-7
MA0062.2	MA0062.2	2.60718e-17
MA0065.2	MA0065.2	0.332
MA0066.1	MA0066.1	0.0299
MA0067.1	MA0067.1	0.267
MA0068.1	MA0068.1	0.0176
MA0069.1	MA0069.1	0.428
MA0070.1	MA0070.1	0.469
MA0071.1	MA0071.1	0.595
MA0072.1	MA0072.1	0.433
MA0073.1	MA0073.1	0.629
MA0074.1	MA0074.1	0.545
MA0076.1	MA0076.1	1.27376e-6
MA0077.1	MA0077.1	0.174
MA0078.1	MA0078.1	0.78
MA0079.2	MA0079.2	0.0637
MA0080.2	MA0080.2	4.83288e-14
MA0081.1	MA0081.1	9.56359e-4
MA0083.1	MA0083.1	0.0254
MA0084.1	MA0084.1	0.817
MA0087.1	MA0087.1	0.85
MA0088.1	MA0088.1	0.71
MA0090.1	MA0090.1	0.00802
MA0091.1	MA0091.1	0.341
MA0092.1	MA0092.1	0.913
MA0093.1	MA0093.1	0.15
MA0099.2	MA0099.2	0.2
MA0100.1	MA0100.1	0.345
MA0101.1	MA0101.1	8.96315e-7
MA0102.2	MA0102.2	0.742
MA0103.1	MA0103.1	0.136
MA0104.2	MA0104.2	0.194
MA0105.1	MA0105.1	2.40151e-8
MA0106.1	MA0106.1	0.92
MA0107.1	MA0107.1	8.54509e-7
MA0108.2	MA0108.2	6.07766e-6
MA0111.1	MA0111.1	0.507
MA0112.2	MA0112.2	0.0102
MA0113.1	MA0113.1	0.336
MA0114.1	MA0114.1	0.572
MA0115.1	MA0115.1	0.874
MA0116.1	MA0116.1	6.64422e-4
MA0117.1	MA0117.1	0.704
MA0119.1	MA0119.1	0.468
MA0122.1	MA0122.1	0.954
MA0124.1	MA0124.1	0.681
MA0125.1	MA0125.1	0.0428
MA0131.1	MA0131.1	0.427
MA0135.1	MA0135.1	0.781
MA0136.1	MA0136.1	3.73966e-19
MA0137.2	MA0137.2	0.373
MA0138.2	MA0138.2	0.0631
MA0139.1	MA0139.1	0.148
MA0140.1	MA0140.1	0.419
MA0141.1	MA0141.1	0.771
MA0142.1	MA0142.1	1.84672e-4
MA0143.1	MA0143.1	0.15
MA0144.1	MA0144.1	0.551
MA0145.1	MA0145.1	0.485
MA0146.1	MA0146.1	0.334
MA0147.1	MA0147.1	0.135
MA0148.1	MA0148.1	0.703
MA0149.1	MA0149.1	0.138
MA0150.1	MA0150.1	0.688
MA0152.1	MA0152.1	0.341
MA0153.1	MA0153.1	2.49962e-7
MA0154.1	MA0154.1	0.00164
MA0155.1	MA0155.1	0.671
MA0156.1	MA0156.1	7.44747e-23
MA0157.1	MA0157.1	0.348
MA0159.1	MA0159.1	0.0181
MA0160.1	MA0160.1	0.825
MA0162.1	MA0162.1	0.581
MA0163.1	MA0163.1	3.8006e-4
MA0164.1	MA0164.1	0.579
MA0258.1	MA0258.1	0.0176
MA0259.1	MA0259.1	0.45

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13214

Novel motif	Logo	P-value
1	1	0.146
10	10	0.0276
100	100	0.83
101	101	0.932
102	102	0.575
103	103	0.09
104	104	0.808
105	105	0.802
106	106	0.364
107	107	0.796
108	108	0.488
109	109	0.159
11	11	0.194
110	110	0.0695
111	111	0.119
112	112	0.0442
113	113	0.215
114	114	0.202
115	115	0.629
116	116	0.795
117	117	6.18812e-4
118	118	0.0876
119	119	0.561
12	12	0.483
120	120	0.523
121	121	0.412
122	122	0.866
123	123	0.726
124	124	0.981
125	125	0.111
126	126	0.247
127	127	0.385
128	128	0.19
129	129	0.101
13	13	0.0749
130	130	0.966
131	131	0.637
132	132	0.715
133	133	0.844
134	134	0.924
135	135	0.899
136	136	0.968
137	137	0.134
138	138	0.667
139	139	0.292
14	14	0.987
140	140	0.705
141	141	0.129
142	142	0.799
143	143	0.019
144	144	0.406
145	145	0.143
146	146	0.841
147	147	0.852
148	148	0.103
149	149	0.564
15	15	0.098
150	150	0.335
151	151	0.165
152	152	0.632
153	153	0.226
154	154	0.384
155	155	0.246
156	156	1.55351e-23
157	157	0.912
158	158	0.13
159	159	0.665
160	160	0.973
161	161	0.0349
162	162	0.357
163	163	0.255
164	164	0.0951
165	165	0.378
166	166	0.518
167	167	0.124
168	168	0.943
169	169	0.113
17	17	0.54
18	18	0.302
19	19	0.932
2	2	0.121
20	20	0.0276
21	21	0.332
22	22	0.866
23	23	0.326
24	24	0.457
25	25	0.151
26	26	0.0243
27	27	0.708
28	28	0.21
29	29	0.019
3	3	0.0557
30	30	0.196
31	31	0.974
32	32	0.649
33	33	0.196
34	34	0.638
35	35	0.1
36	36	0.0535
37	37	0.0827
38	38	0.781
39	39	0.463
4	4	0.751
40	40	0.222
41	41	0.431
42	42	0.131
43	43	0.142
44	44	0.306
45	45	0.684
46	46	0.178
47	47	0.266
48	48	0.208
49	49	0.113
5	5	0.034
50	50	0.565
51	51	0.895
52	52	0.299
53	53	0.404
54	54	0.791
55	55	0.506
56	56	0.779
57	57	0.73
58	58	0.0976
59	59	0.398
6	6	0.629
60	60	0.736
61	61	0.0915
62	62	0.0481
63	63	0.801
64	64	0.689
65	65	0.828
66	66	0.927
67	67	0.786
68	68	0.0816
69	69	0.885
7	7	0.19
70	70	0.0207
71	71	0.0388
72	72	0.35
73	73	0.103
74	74	0.974
75	75	0.00388
76	76	0.0124
77	77	0.334
78	78	0.0694
79	79	0.789
8	8	0.0688
80	80	0.0175
81	81	0.548
82	82	0.197
83	83	0.129
84	84	0.519
85	85	0.608
86	86	0.172
87	87	0.572
88	88	0.495
89	89	0.645
9	9	0.946
90	90	0.022
91	91	0.598
92	92	0.264
93	93	0.252
94	94	0.201
95	95	0.136
96	96	0.307
97	97	0.799
98	98	0.175
99	99	0.338

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13214

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011468 mouse CD41-positive megakaryocyte control sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000556 (megakaryocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000343 (control treatment sample)
0011468 (mouse CD41-positive megakaryocyte control sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008691
+|DRA_sample_Accession=CAGE@SAMD00005393
-|accession_numbers=CAGE;DRX008801;DRR009673;DRZ001098;DRZ002483
+|accession_numbers=CAGE;DRX008801;DRR009673;DRZ001098;DRZ002483;DRZ012448;DRZ013833
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255,CL:0000556
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr9:51021788..51021802,+!p1@Pou2af1!2.38!279.44!Pou2af1;;chr7:51787434..51787448,-!p1@Spib!2.34!307.68!Spib;;chr4:44723559..44723593,-!p1@Pax5!2.26!183.05!Pax5;;chr6:99216488..99216534,-!p2@Foxp1!2.21!435.20!Foxp1;;chr1:38721792..38721845,-!p1@Aff3!2.20!195.25!Aff3;;chr4:44723520..44723544,-!p2@Pax5!2.12!130.53!Pax5;;chr11:98407264..98407295,-!p1@Ikzf3!2.08!118.33!Ikzf3;;chr13:30841099..30841116,+!p1@Irf4!2.03!164.13!Irf4;;chr4:44723633..44723646,-!p3@Pax5!1.98!95.02!Pax5;;chr11:98407234..98407259,-!p2@Ikzf3!1.93!85.01!Ikzf3;;chr11:11586218..11586285,+!p1@Ikzf1!1.80!191.41!Ikzf1;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.73!66.64!Zbtb11;;chr16:92826249..92826325,-!p1@Runx1!1.60!91.73!Runx1;;chr11:98407370..98407395,-!p3@Ikzf3!1.60!38.94!Ikzf3;;chr1:87497610..87497645,+!p1@Gm2427,p1@Sp140!1.60!38.94!Sp140;;chr8:87225329..87225396,+!p1@Lyl1!1.59!137.11!Lyl1;;chr4:44723835..44723849,-!p4@Pax5!1.56!35.10!Pax5;;chr1:52065508..52065522,+!p2@Stat4!1.55!40.45!Stat4;;chr7:25917492..25917512,-!p1@Pou2f2!1.52!53.75!Pou2f2;;chr1:52176406..52176433,+!p2@Stat1!1.51!75.14!Stat1;;chr8:123260252..123260264,+!p1@Irf8!1.49!200.60!Irf8;;chr14:79915425..79915501,+!p1@Elf1!1.48!250.92!Elf1;;chr1:87497247..87497279,+!p2@Gm2427,p2@Sp140!1.48!29.21!Sp140;;chr4:63064364..63064384,-!p1@Akna!1.47!80.90!Akna;;chr7:31206743..31206761,+!p1@Nfkbid!1.42!34.55!Nfkbid;;chr1:87546583..87546595,+!p1@Sp100!1.41!34.55!Sp100;;chr7:20162663..20162678,+!p1@Zfp296!1.40!31.40!Zfp296;;chr1:52065530..52065548,+!p3@Stat4!1.40!24.13!Stat4;;chr13:83663902..83663927,+!p1@Mef2c!1.38!536.39!Mef2c;;chr11:44430812..44430838,+!p1@Ebf1!1.38!213.90!Ebf1;;chr4:124805061..124805087,-!p1@Zc3h12a!1.36!66.36!Zc3h12a;;chr10:88145766..88145770,-!p1@Spic!1.36!28.66!Spic;;chr17:45692676..45692695,+!p2@Nfkbie!1.35!42.37!Nfkbie;;chr11:23670953..23671028,-!p1@Rel!1.33!111.47!Rel;;chr4:32325688..32325777,+!p1@Bach2!1.32!169.06!Bach2;;chr6:29476690..29476724,+!p1@Irf5!1.32!90.50!Irf5;;chr1:52065454..52065495,+!p1@Stat4!1.32!32.63!Stat4;;chr8:47825203..47825225,+!p3@Irf2!1.32!26.60!Irf2;;chr11:98407340..98407359,-!p4@Ikzf3!1.32!20.02!Ikzf3;;chr11:11585678..11585745,+!p5@Ikzf1!1.31!28.25!Ikzf1;;chr1:38721767..38721778,-!p5@Aff3!1.31!19.47!Aff3;;chr3:130815703..130815721,+!p2@Lef1!1.30!23.04!Lef1;;chr9:32503590..32503680,+!p1@Ets1!1.29!652.25!Ets1;;chr9:32348943..32349001,-!p1@Fli1!1.29!147.40!Fli1;;chr2:173044380..173044432,-!p1@Zbp1!1.28!42.92!Zbp1;;chr8:108583550..108583595,+!p2@Nfatc3!1.25!74.32!Nfatc3;;chr8:47825166..47825178,+!p2@Irf2!1.24!25.23!Irf2;;chr4:134708909..134708939,+!p3@Runx3!1.24!16.32!Runx3;;chr17:51971932..51971958,-!p2@Satb1!1.23!21.94!Satb1;;chr11:16908650..16908690,-!p1@Plek!1.22!92.96!Plek;;chr4:134708451..134708469,+!p1@Runx3!1.22!27.56!Runx3;;chr11:100683839..100683890,-!p2@Stat5b!1.21!35.38!Stat5b;;chr11:98407305..98407321,-!p6@Ikzf3!1.21!15.36!Ikzf3;;chr4:44717334..44717367,-!p5@Pax5!1.21!15.22!Pax5;;chr2:90936901..90936945,+!p1@Sfpi1!1.20!77.61!Sfpi1;;chr1:52176378..52176401,+!p3@Stat1!1.20!44.01!Stat1;;chr11:23977565..23977612,+!p5@Bcl11a!1.20!32.08!Bcl11a;;chr1:38721779..38721790,-!p6@Aff3!1.20!14.95!Aff3;;chr11:44431369..44431389,+!p8@Ebf1!1.19!18.65!Ebf1;;chrX:137077716..137077734,-!p1@Tsc22d3!1.18!99.82!Tsc22d3;;chr11:11585912..11585950,+!p6@Ikzf1!1.18!17.96!Ikzf1;;chr6:29479277..29479296,+!p2@Irf5!1.18!14.12!Irf5;;chr11:44430788..44430804,+!p3@Ebf1!1.17!34.14!Ebf1;;chr1:87546602..87546617,+!p2@Sp100!1.17!16.18!Sp100;;chr11:98407142..98407159,-!p5@Ikzf3!1.16!13.57!Ikzf3;;chr17:45692642..45692663,+!p1@Nfkbie!1.14!40.86!Nfkbie;;chr11:11590140..11590187,+!p3@Ikzf1!1.14!15.63!Ikzf1;;chr1:167865149..167865167,-!p3@Pou2f1!1.13!12.34!Pou2f1;;chr19:37509324..37509337,+!p1@Hhex!1.12!86.52!Hhex;;chr11:11584970..11585030,+!p2@Ikzf1!1.11!16.87!Ikzf1;;chr13:83663868..83663894,+!p2@Mef2c!1.10!165.77!Mef2c;;chr19:46379199..46379301,+!p1@Nfkb2!1.08!63.21!Nfkb2;;chr11:11590117..11590138,+!p4@Ikzf1!1.07!10.83!Ikzf1;;chr8:74842952..74842970,+!p1@Klf2!1.05!686.67!Klf2;;chr1:133904901..133904934,+!p3@Elk4!1.05!30.30!Elk4;;chr18:80904854..80904919,-!p2@Nfatc1!1.04!118.74!Nfatc1;;chr18:80909801..80909819,-!p1@Nfatc1!1.03!58.68!Nfatc1;;chr4:32325445..32325468,+!p4@Bach2!1.03!14.12!Bach2;;chr2:17977331..17977360,+!p11@Mllt10!1.02!10.56!Mllt10;;chr4:44717308..44717321,-!p6@Pax5!1.02!9.46!Pax5;;chr14:79915502..79915514,+!p4@Elf1!1.01!14.26!Elf1;;chr5:134720044..134720103,-!p6@Gtf2i!1.00!9.05!Gtf2i;;chr5:92391466..92391471,+!p2@Thap6!0.99!12.89!Thap6;;chr17:51972530..51972571,-!p7@Satb1!0.99!8.78!Satb1;;chr11:98407448..98407455,-!p12@Ikzf3!0.98!8.50!Ikzf3;;chr11:52096066..52096081,-!p2@Tcf7!0.97!10.15!Tcf7;;chr4:135736690..135736705,+!p6@E2f2!0.97!9.74!E2f2;;chr2:90936886..90936898,+!p5@Sfpi1!0.96!9.74!Sfpi1;;chr6:29479308..29479325,+!p3@Irf5!0.96!8.09!Irf5;;chr11:23978022..23978076,+!p1@Bcl11a!0.95!175.10!Bcl11a;;chr12:85534957..85535017,-!p2@C130039O16Rik!0.95!41.41!C130039O16Rik;;chr11:53583544..53583559,+!p1@Irf1!0.94!133.55!Irf1;;c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or1;;chr8:74405860..74405905,+!p2@Zfp709!0.63!8.09!Zfp709;;chr3:135354349..135354371,-!p6@Nfkb1!0.63!7.40!Nfkb1;;chr4:63071717..63071736,-!p4@Akna!0.63!4.80!Akna;;chr5:20387850..20387869,-!p1@Phtf2!0.62!38.94!Phtf2;;chr17:27693887..27693908,+!p2@Hmga1-rs1,p2@Hmga1!0.62!26.74!Hmga1;;chr3:135354289..135354334,-!p3@Nfkb1!0.62!18.78!Nfkb1;;chr3:88753953..88754004,+!p1@Ash1l!0.62!12.20!Ash1l;;chr13:67433461..67433489,-!p2@Zfp595!0.62!9.05!Zfp595;;chr10:67000609..67000625,+!p1@Egr2!0.62!8.23!Egr2;;chr18:69753108..69753139,+!p8@Tcf4!0.62!6.99!Tcf4;;chr12:100802113..100802127,-!p5@Foxn3!0.62!4.39!Foxn3;;chr17:71201096..71201114,-!p6@Tgif1!0.62!3.84!Tgif1;;chr17:47906140..47906150,+!p6@Tfeb!0.62!3.15!Tfeb;;chr11:100721761..100721851,+!p1@Stat5a!0.61!27.01!Stat5a;;chr17:47874074..47874098,+!p3@Tfeb!0.61!6.31!Tfeb;;chr9:96619968..96619983,-!p6@Zbtb38!0.60!5.48!Zbtb38;;chr13:67500674..67500700,-!p2@Zfp429!0.60!5.35!Zfp429;;chr12:78063032..78063043,-!p4@Max!0.60!4.39!Max;;chr11:11590188..11590200,+!p8@Ikzf1!0.60!3.02!Ikzf1;;chr17:51972603..51972624,-!p9@Satb1!0.60!3.02!Satb1;;chr12:85559785..85559840,-!p1@C130039O16Rik!0.59!46.89!C130039O16Rik;;chr7:28645585..28645659,+!p1@Zfp607!0.59!33.18!Zfp607;;chr17:46520674..46520741,+!p1@Zfp318!0.59!29.21!Zfp318;;chr3:95021612..95021650,-!p2@Gabpb2!0.59!17.55!Gabpb2;;chr10:13686815..13686846,+!p3@Hivep2!0.59!7.27!Hivep2;;chr2:165818178..165818187,+!p3@Ncoa3!0.59!6.86!Ncoa3;;chr2:90922554..90922575,+!p4@Sfpi1!0.59!5.90!Sfpi1;;chr9:19426719..19426729,+!p4@Zfp317!0.59!4.11!Zfp317;;chr5:77695390..77695414,+!p2@Rest!0.59!3.84!Rest;;chr11:23670827..23670846,-!p3@Rel!0.59!2.88!Rel;;chr4:108132605..108132635,+!p1@Zcchc11!0.58!126.15!Zcchc11;;chr18:69753015..69753104,+!p1@Tcf4!0.58!45.93!Tcf4;;chr13:44826694..44826710,+!p3@Jarid2!0.58!37.71!Jarid2;;chrY:234225..234243,+!p1@Kdm5d,p1@LOC100040412!0.58!26.33!Kdm5d;;chr6:134780163..134780197,+!p2@Crebl2!0.58!7.40!Crebl2;;chr12:85559762..85559778,-!p5@C130039O16Rik!0.58!5.07!C130039O16Rik;;chr6:29490887..29490891,+!p5@Irf5!0.58!3.56!Irf5;;chr8:72663098..72663160,-!p2@LOC100048268,p2@Rfxank!0.57!16.45!Rfxank;;chr4:154335024..154335039,+!p1@Hes5!0.57!3.43!Hes5;;chr4:135736707..135736724,+!p8@E2f2!0.57!2.74!E2f2;;chr16:92826232..92826245,-!p4@Runx1!0.57!2.74!Runx1;;chr11:98407121..98407133,-!p10@Ikzf3!0.57!2.74!Ikzf3;;chr2:165818125..165818167,+!p1@Ncoa3!0.56!88.44!Ncoa3;;chr16:3744089..3744145,+!p1@Zfp263!0.56!68.01!Zfp263;;chr10:33670996..33671069,-!p1@Zufsp!0.56!65.54!Zufsp;;chr13:44826937..44826952,+!p2@Jarid2!0.56!46.21!Jarid2;;chr10:26095768..26095808,-!p1@L3mbtl3!0.56!28.52!L3mbtl3;;chr2:91077082..91077122,-!p1@Ddb2!0.56!20.16!Ddb2;;chr2:181100223..181100237,+!p4@Zgpat!0.56!8.50!Zgpat;;chr10:20880731..20880775,-!p2@Myb!0.56!6.31!Myb;;chr7:31207408..31207450,+!p4@Nfkbid!0.56!4.80!Nfkbid;;chr1:181733959..181733977,-!p4@Ahctf1!0.56!3.56!Ahctf1;;chr5:104182694..104182724,+!p8@Aff1!0.56!3.43!Aff1;;chr4:134676555..134676575,+!p2@Runx3!0.56!2.61!Runx3;;chr17:51972575..51972595,-!p13@Satb1!0.56!2.61!Satb1;;chr7:148452314..148452329,-!p1@Irf7!0.55!21.80!Irf7;;chr17:15701286..15701323,-!p1@Prdm9!0.55!12.20!Prdm9;;chr17:84587167..84587239,-!p2@Zfp36l2!0.55!10.42!Zfp36l2;;chr10:127707602..127707633,+!p1@Stat2!0.54!27.70!Stat2;;chr19:46380172..46380231,+!p2@Nfkb2!0.54!21.39!Nfkb2;;chr13:67461490..67461531,-!p1@Zfp595,p1@Zfp953!0.54!12.48!Zfp953;;chr6:47785748..47785776,+!p3@Zfp398!0.54!11.38!Zfp398;;chr18:75527210..75527215,+!p4@Smad7!0.54!4.66!Smad7;;chr19:37511111..37511115,+!p2@Hhex!0.54!2.47!Hhex;;chr10:13686012..13686028,+!p8@Hivep2!0.54!2.47!Hivep2;;chr8:87425854..87425891,+!p1@Klf1!0.54!2.47!Klf1;;chr1:92949999..92950097,+!p1@Lrrfip1!0.53!81.86!Lrrfip1;;chr10:127080031..127080090,+!p1@Stat6!0.53!67.32!Stat6;;chr16:23988711..23988727,-!p1@Bcl6!0.53!36.34!Bcl6;;chr17:21625946..21626024,+!p1@Zfp53!0.53!33.18!Zfp53;;chr11:69579401..69579427,+!p2@Zbtb4!0.53!11.52!Zbtb4;;chr10:92773708..92773734,-!p3@Elk3!0.53!5.48!Elk3;;chrX:137077608..137077619,-!p6@Tsc22d3!0.53!3.43!Tsc22d3;;chr17:84587279..84587294,-!p1@Zfp36l2!0.52!320.98!Zfp36l2;;chr10:70700755..70700772,-!p2@Tfam!0.52!13.99!Tfam;;chr16:55973950..55973977,+!p4@Rpl24,p4@Zbtb11!0.52!13.44!Zbtb11;;chr13:64253718..64253763,-!p2@Zfp367!0.52!7.13!Zfp367;;chr16:55838757..55838774,-!p2@Nfkbiz!0.52!2.88!Nfkbiz;;chr11:44431191..44431205,+!p11@Ebf1!0.52!2.61!Ebf1;;chr11:98407512..98407517,-!p13@Ikzf3!0.52!2.33!Ikzf3;;chr11:23977965..23977974,+!p11@Bcl11a!0.52!2.33!Bcl11a;;chr2:168415791..168415802,-!p5@Nfatc2!0.52!2.33!Nfatc2;;chr12:87027663..87027678,+!p2@Batf!0.52!2.33!Batf;;chr4:108132386..108132400,+!p14@Zcchc11!0.52!2.33!Zcchc11;;chr16:55822241..55822258,-!p1@Nfkbiz!0.51!91.18!Nfkbiz;;chr1:133904183..133904211,+!p1@Elk4!0.51!24.95!Elk4;;chr5:65194602..65194613,+!p3@Klf3!0.51!12.48!Klf3;;chr5:140267510..140267555,+!p2@Mafk!0.51!6.31!Mafk;;chr18:3281750..3281776,-!p2@Crem!0.51!5.35!Crem;;chr2:25562241..25562250,+!p4@Bmyc!0.51!2.61!Bmyc;;chr2:72817045..72817123,-!p1@Sp3!0.50!93.51!Sp3;;chr9:72379991..723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chr17:45570660..45570694,-!p1@Cdc5l!0.16!8.23!Cdc5l;;chr15:75799717..75799742,+!p1@Zfp707!0.16!4.39!Zfp707;;chr7:29551464..29551487,-!p2@Nfkbib!0.16!4.25!Nfkbib;;chr4:133310175..133310212,-!p5@Arid1a!0.16!3.43!Arid1a;;chr11:102179074..102179099,-!p4@Ubtf!0.16!3.15!Ubtf;;chr12:77470461..77470504,-!p3@Zbtb25!0.16!3.15!Zbtb25;;chr2:166888481..166888548,-!p3@Znfx1!0.16!2.74!Znfx1;;chr6:92042363..92042413,+!p3@Nr2c2!0.16!2.33!Nr2c2;;chr11:3190303..3190351,+!p3@Patz1!0.16!1.78!Patz1;;chr13:58501849..58501853,-!p5@Hnrnpk!0.16!1.51!Hnrnpk;;chr6:92041489..92041500,+!p4@Nr2c2!0.16!1.51!Nr2c2;;chr11:44431710..44431725,+!p7@Ebf1!0.16!1.23!Ebf1;;chr1:13364153..13364156,-!p5@Ncoa2!0.16!1.10!Ncoa2;;chr15:103085660..103085681,-!p1@Nfe2!0.16!1.10!Nfe2;;chr6:98978189..98978198,-!p10@Foxp1!0.16!0.82!Foxp1;;chr7:6315994..6316007,+!p2@Zfp78!0.16!0.82!Zfp78;;chrX:137077134..137077143,-!p10@Tsc22d3!0.16!0.55!Tsc22d3;;chr17:51952537..51952552,-!p15@Satb1!0.16!0.55!Satb1;;chr10:116661536..116661555,-!p1@Yeats4!0.15!72.53!Yeats4;;chr5:147760216..147760292,+!p1@Gtf3a!0.15!57.04!Gtf3a;;chr18:74375851..74375891,+!p1@Cxxc1!0.15!50.32!Cxxc1;;chr14:75684150..75684197,+!p1@Zc3h13!0.15!41.55!Zc3h13;;chr14:57397138..57397189,-!p1@Pspc1!0.15!39.21!Pspc1;;chr15:57907747..57907798,-!p1@9130401M01Rik,p1@Zhx1!0.15!33.73!Zhx1;;chr13:5860776..5860796,+!p1@Klf6!0.15!30.30!Klf6;;chr1:181733756..181733833,-!p1@Ahctf1!0.15!24.00!Ahctf1;;chr1:75188717..75188804,+!p1@ENSMUST00000125384,p1@ENSMUST00000127625,p1@ENSMUST00000131788,p1@ENSMUST00000134233,p1@ENSMUST00000134378,p1@ENSMUST00000145459,p1@ENSMUST00000151887,p1@ENSMUST00000152233!0.15!16.87!Ankzf1;;chr7:48888915..48888973,+!p1@Zfp788!0.15!15.49!Zfp788;;chr7:26006436..26006488,+!p1@Zfp526!0.15!13.99!Zfp526;;chr10:75495343..75495405,+!p1@Zfp280b!0.15!10.01!Zfp280b;;chr7:28516392..28516416,+!p2@Zfp60!0.15!8.78!Zfp60;;chr5:31754831..31754876,+!p1@Zfp512!0.15!8.64!Zfp512;;chr14:55711198..55711258,-!p1@Zfhx2!0.15!6.58!Zfhx2;;chr8:72356532..72356611,+!p1@Pbx4!0.15!4.52!Pbx4;;chr5:9160908..9160912,-!p2@Dmtf1!0.15!4.52!Dmtf1;;chr11:102179101..102179130,-!p3@Ubtf!0.15!3.84!Ubtf;;chr4:87679193..87679219,-!p5@Mllt3!0.15!2.74!Mllt3;;chr11:95170871..95170900,-!p2@Myst2!0.15!2.61!Myst2;;chr15:100058289..100058300,+!p3@Atf1!0.15!2.61!Atf1;;chr2:165818108..165818119,+!p2@Ncoa3!0.15!2.47!Ncoa3;;chr15:103170516..103170531,-!p2@Zfp385a!0.15!2.19!Zfp385a;;chr5:107125778..107125803,-!p4@Zfp644!0.15!2.06!Zfp644;;chr8:107694568..107694586,+!p5@Cbfb!0.15!1.78!Cbfb;;chr17:51951634..51951651,-!p6@Satb1!0.15!1.65!Satb1;;chr8:72663049..72663061,-!p4@LOC100048268,p4@Rfxank!0.15!1.51!Rfxank;;chr18:69505476..69505494,+!p15@Tcf4!0.15!1.23!Tcf4;;chr15:25914138..25914146,+!p4@Zfp622!0.15!1.23!Zfp622;;chr10:92773736..92773761,-!p4@Elk3!0.15!1.23!Elk3;;chr5:104183237..104183248,+!p7@Aff1!0.15!1.23!Aff1;;chr6:47785727..47785738,+!p6@Zfp398!0.15!0.96!Zfp398;;chr5:77695258..77695269,+!p12@Rest!0.15!0.41!Rest;;chr5:108155037..108155060,-!p2@Gfi1!0.15!0.41!Gfi1;;chr6:98978428..98978450,-!p15@Foxp1!0.15!0.41!Foxp1;;chr5:31754898..31754907,+!p5@Zfp512!0.15!0.41!Zfp512;;chr11:52095797..52095809,-!p5@Tcf7!0.15!0.41!Tcf7;;chr10:129717308..129717319,-!p2@Neurod4!0.15!0.41!Neurod4;;chr11:52096732..52096741,-!p6@Tcf7!0.15!0.41!Tcf7;;chr18:36441165..36441172,+!p6@Pura!0.15!0.41!Pura;;chr19:46380399..46380417,+!p4@Nfkb2!0.15!0.41!Nfkb2;;chr16:11176149..11176163,-!p5@Zc3h7a!0.15!0.41!Zc3h7a;;chr18:76400957..76400968,+!p12@Smad2!0.15!0.41!Smad2;;chr8:87502350..87502362,-!p2@Junb!0.15!0.41!Junb;;chr8:87502423..87502439,-!p4@Junb!0.15!0.41!Junb;;chr9:96159133..96159145,+!p9@Tfdp2!0.15!0.41!Tfdp2;;chr3:89191054..89191070,-!p5@Zbtb7b!0.15!0.41!Zbtb7b;;chr3:130815382..130815401,+!p14@Lef1!0.15!0.41!Lef1;;chr3:89191004..89191022,-!p4@Zbtb7b!0.15!0.41!Zbtb7b;;chr3:135271365..135271376,-!p20@Nfkb1!0.15!0.41!Nfkb1;;chr3:130813833..130813848,+!p16@Lef1!0.15!0.41!Lef1;;chr4:32325928..32325939,+!p11@Bach2!0.15!0.41!Bach2;;chr4:135728473..135728494,+!p5@E2f2!0.15!0.41!E2f2;;chr1:92949751..92949769,+!p5@Lrrfip1!0.15!0.41!Lrrfip1;;chr15:81977668..81977705,+!p1@Srebf2!0.14!95.02!Srebf2;;chr18:35721854..35721914,+!p1@Matr3!0.14!93.51!Matr3;;chr7:51809271..51809325,-!p1@Nr1h2!0.14!69.65!Nr1h2;;
@@ Line 45: / Line 45: @@
 |is_obsolete=
 |library_id=CNhs13214
-|library_id_phase_based=1:CNhs13214
+|library_id_phase_based=2:CNhs13214
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;11777
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;11777
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/CD41%252b%2520megakaryocyte%2520control%252c%2520donor2.CNhs13214.11777-124A4.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/CD41%252b%2520megakaryocyte%2520control%252c%2520donor2.CNhs13214.11777-124A4.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/CD41%252b%2520megakaryocyte%2520control%252c%2520donor2.CNhs13214.11777-124A4.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/CD41%252b%2520megakaryocyte%2520control%252c%2520donor2.CNhs13214.11777-124A4.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/CD41%252b%2520megakaryocyte%2520control%252c%2520donor2.CNhs13214.11777-124A4.mm9.nobarcode.rdna.fa.gz
 |name=CD41+ megakaryocyte control, donor2
 |namespace=
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13214,LSID1005,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=-0.0898935102661877,0,0,0.105247439647798,0.189899355668011,0,-0.0247927199548243,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.00199399521456392,0,0,0,0,0,0,0,0,0,0,0,0,0.0822173411434158,0.172977539666981,0,0,0,0,0,-0.0510646388520941,-0.0661618130246221,0.095653190598302,-0.984211366477826,-0.269868638010351,0.226747351639347,0,0,0,0,0,0,0,0,0,0,0,-0.0102013754150569,0,0,0,0,0,0,0,0.362023486477548,0.349088981842632,0,-0.117389802908326,0.193661266119061,-0.102286870622699,0.0160310108270457,0,0,-0.10498004841721,-0.0978621290149776,0,0,-0.0539833247616441,-0.0892088282788439,-0.303702897998074,0.0264158448078909,0,0,0,0,0,0,-0.0209052850172491,-0.299822494234497,0.372719945272305,0,0,0,0.180057004838323,0
@@ Line 88: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:11777-124A4;search_select_hide=table117:11777-124A4
 }}

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FF:11777-124A4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:19, 4 June 2020

CNhs13214

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0