FF:11779-124A6: Difference between revisions

Latest revision as of 18:19, 4 June 2020

Name:	CD41+ megakaryocyte control, donor3
Species:	Mouse (Mus musculus)
Library ID:	CNhs13201
Sample type:	primary cells
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bone marrow
dev stage	NA
sex	NA
age	NA
cell type	megakaryocyte
cell line	NA
company	NA
collaboration	Hozumi Motohashi (Tohoku University Graduate School of Medicine)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	PBS-4
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005174

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13201		CAGE		DRX008802		DRR009674

Accession ID Mm9

Library id		BAM		CTSS
CNhs13201		DRZ001099		DRZ002484

Accession ID Mm10

Library id		BAM		CTSS
CNhs13201		DRZ012449		DRZ013834

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs13201

0	0
1	0
10	0
100	0
1000	-0.0355
1001	-0.0631
1002	-0.116
1003	-0.175
1004	0
1005	0.0428
1006	-0.143
1007	-0.255
1008	0
1009	-0.19
101	0.0965
1010	0
1011	0.154
1012	0
1013	-0.278
1014	-0.0874
1015	-0.036
1016	-0.594
1017	0
1018	0
1019	0
102	0.154
1020	0.237
1021	0.267
1022	-0.187
1023	0
1024	-0.14
1025	-0.0611
1026	0
1027	-0.048
1028	0
1029	-0.0989
103	-0.0887
1030	0.357
1031	-0.879
1032	-0.572
1033	0
1034	0.154
1035	0
1036	0.255
1037	0
1038	-0.283
1039	0.00654
104	0
1040	-0.216
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13201

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.73444e-5
MA0003.1	MA0003.1	0.47
MA0004.1	MA0004.1	0.154
MA0006.1	MA0006.1	0.774
MA0007.1	MA0007.1	0.742
MA0009.1	MA0009.1	0.918
MA0014.1	MA0014.1	0.648
MA0017.1	MA0017.1	0.235
MA0018.2	MA0018.2	0.41
MA0019.1	MA0019.1	0.307
MA0024.1	MA0024.1	0.656
MA0025.1	MA0025.1	0.417
MA0027.1	MA0027.1	0.672
MA0028.1	MA0028.1	6.58487e-5
MA0029.1	MA0029.1	0.217
MA0030.1	MA0030.1	0.224
MA0031.1	MA0031.1	0.763
MA0035.2	MA0035.2	0.719
MA0038.1	MA0038.1	0.55
MA0039.2	MA0039.2	0.997
MA0040.1	MA0040.1	0.602
MA0041.1	MA0041.1	0.165
MA0042.1	MA0042.1	0.793
MA0043.1	MA0043.1	0.645
MA0046.1	MA0046.1	8.9154e-10
MA0047.2	MA0047.2	0.982
MA0048.1	MA0048.1	0.423
MA0050.1	MA0050.1	1.54385e-11
MA0051.1	MA0051.1	7.16199e-7
MA0052.1	MA0052.1	0.0132
MA0055.1	MA0055.1	0.302
MA0057.1	MA0057.1	0.994
MA0058.1	MA0058.1	0.163
MA0059.1	MA0059.1	0.0454
MA0060.1	MA0060.1	0.0912
MA0061.1	MA0061.1	2.56501e-6
MA0062.2	MA0062.2	1.91382e-14
MA0065.2	MA0065.2	0.222
MA0066.1	MA0066.1	0.0643
MA0067.1	MA0067.1	0.328
MA0068.1	MA0068.1	0.00972
MA0069.1	MA0069.1	0.827
MA0070.1	MA0070.1	0.487
MA0071.1	MA0071.1	0.595
MA0072.1	MA0072.1	0.684
MA0073.1	MA0073.1	0.714
MA0074.1	MA0074.1	0.582
MA0076.1	MA0076.1	3.91176e-5
MA0077.1	MA0077.1	0.177
MA0078.1	MA0078.1	0.935
MA0079.2	MA0079.2	0.0778
MA0080.2	MA0080.2	7.36393e-14
MA0081.1	MA0081.1	0.00109
MA0083.1	MA0083.1	0.0297
MA0084.1	MA0084.1	0.697
MA0087.1	MA0087.1	0.711
MA0088.1	MA0088.1	0.51
MA0090.1	MA0090.1	0.018
MA0091.1	MA0091.1	0.24
MA0092.1	MA0092.1	0.883
MA0093.1	MA0093.1	0.173
MA0099.2	MA0099.2	0.372
MA0100.1	MA0100.1	0.251
MA0101.1	MA0101.1	3.92649e-6
MA0102.2	MA0102.2	0.834
MA0103.1	MA0103.1	0.208
MA0104.2	MA0104.2	0.182
MA0105.1	MA0105.1	2.6298e-8
MA0106.1	MA0106.1	0.76
MA0107.1	MA0107.1	4.50546e-6
MA0108.2	MA0108.2	6.30819e-4
MA0111.1	MA0111.1	0.537
MA0112.2	MA0112.2	0.0122
MA0113.1	MA0113.1	0.17
MA0114.1	MA0114.1	1
MA0115.1	MA0115.1	0.843
MA0116.1	MA0116.1	0.00136
MA0117.1	MA0117.1	0.74
MA0119.1	MA0119.1	0.764
MA0122.1	MA0122.1	0.862
MA0124.1	MA0124.1	0.788
MA0125.1	MA0125.1	0.0422
MA0131.1	MA0131.1	0.428
MA0135.1	MA0135.1	0.949
MA0136.1	MA0136.1	1.31335e-17
MA0137.2	MA0137.2	0.475
MA0138.2	MA0138.2	0.0704
MA0139.1	MA0139.1	0.137
MA0140.1	MA0140.1	0.00736
MA0141.1	MA0141.1	0.549
MA0142.1	MA0142.1	1.74909e-4
MA0143.1	MA0143.1	0.277
MA0144.1	MA0144.1	0.632
MA0145.1	MA0145.1	0.466
MA0146.1	MA0146.1	0.378
MA0147.1	MA0147.1	0.134
MA0148.1	MA0148.1	0.841
MA0149.1	MA0149.1	0.0691
MA0150.1	MA0150.1	0.344
MA0152.1	MA0152.1	0.263
MA0153.1	MA0153.1	5.90707e-6
MA0154.1	MA0154.1	0.0021
MA0155.1	MA0155.1	0.645
MA0156.1	MA0156.1	8.01576e-20
MA0157.1	MA0157.1	0.526
MA0159.1	MA0159.1	0.0121
MA0160.1	MA0160.1	0.802
MA0162.1	MA0162.1	0.549
MA0163.1	MA0163.1	2.08077e-4
MA0164.1	MA0164.1	0.466
MA0258.1	MA0258.1	0.0334
MA0259.1	MA0259.1	0.454

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13201

Novel motif	Logo	P-value
1	1	0.12
10	10	0.021
100	100	0.804
101	101	0.999
102	102	0.769
103	103	0.0867
104	104	0.777
105	105	0.72
106	106	0.304
107	107	0.981
108	108	0.527
109	109	0.115
11	11	0.142
110	110	0.0414
111	111	0.194
112	112	0.0431
113	113	0.312
114	114	0.378
115	115	0.802
116	116	0.881
117	117	5.73887e-4
118	118	0.0997
119	119	0.512
12	12	0.588
120	120	0.647
121	121	0.432
122	122	0.962
123	123	0.715
124	124	0.805
125	125	0.117
126	126	0.202
127	127	0.488
128	128	0.168
129	129	0.213
13	13	0.0473
130	130	0.83
131	131	0.568
132	132	0.531
133	133	0.887
134	134	0.664
135	135	0.847
136	136	0.9
137	137	0.163
138	138	0.636
139	139	0.196
14	14	0.996
140	140	0.833
141	141	0.285
142	142	0.407
143	143	0.0261
144	144	0.494
145	145	0.0945
146	146	0.893
147	147	0.938
148	148	0.0965
149	149	0.486
15	15	0.0781
150	150	0.323
151	151	0.187
152	152	0.692
153	153	0.288
154	154	0.405
155	155	0.234
156	156	2.95064e-31
157	157	0.796
158	158	0.075
159	159	0.459
160	160	0.92
161	161	0.0621
162	162	0.283
163	163	0.358
164	164	0.123
165	165	0.293
166	166	0.481
167	167	0.196
168	168	0.907
169	169	0.099
17	17	0.437
18	18	0.214
19	19	0.796
2	2	0.103
20	20	0.0298
21	21	0.278
22	22	0.844
23	23	0.375
24	24	0.451
25	25	0.118
26	26	0.0163
27	27	0.742
28	28	0.28
29	29	0.00977
3	3	0.0509
30	30	0.248
31	31	0.99
32	32	0.992
33	33	0.145
34	34	0.715
35	35	0.104
36	36	0.0362
37	37	0.112
38	38	0.928
39	39	0.461
4	4	0.648
40	40	0.147
41	41	0.421
42	42	0.114
43	43	0.143
44	44	0.345
45	45	0.601
46	46	0.171
47	47	0.274
48	48	0.195
49	49	0.1
5	5	0.0388
50	50	0.7
51	51	0.908
52	52	0.391
53	53	0.549
54	54	0.875
55	55	0.46
56	56	0.643
57	57	0.561
58	58	0.146
59	59	0.327
6	6	0.713
60	60	0.637
61	61	0.0934
62	62	0.0553
63	63	0.689
64	64	0.579
65	65	0.869
66	66	0.978
67	67	0.739
68	68	0.0417
69	69	0.845
7	7	0.154
70	70	0.0151
71	71	0.0347
72	72	0.287
73	73	0.0932
74	74	0.959
75	75	0.00609
76	76	0.0231
77	77	0.348
78	78	0.0739
79	79	0.833
8	8	0.0661
80	80	0.0167
81	81	0.479
82	82	0.227
83	83	0.104
84	84	0.62
85	85	0.45
86	86	0.156
87	87	0.563
88	88	0.501
89	89	0.877
9	9	0.942
90	90	0.0149
91	91	0.509
92	92	0.263
93	93	0.248
94	94	0.161
95	95	0.181
96	96	0.33
97	97	0.832
98	98	0.223
99	99	0.339

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13201

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011468 mouse CD41-positive megakaryocyte control sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000556 (megakaryocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000343 (control treatment sample)
0011468 (mouse CD41-positive megakaryocyte control sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005174
-|accession_numbers=CAGE;DRX008802;DRR009674;DRZ001099;DRZ002484
+|accession_numbers=CAGE;DRX008802;DRR009674;DRZ001099;DRZ002484;DRZ012449;DRZ013834
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255,CL:0000556
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
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a2;;chr10:127984472..127984504,-!p2@Zc3h10!0.24!4.24!Zc3h10;;chr18:74375772..74375799,+!p2@Cxxc1!0.24!3.82!Cxxc1;;chr7:135020324..135020368,-!p4@Zfp668!0.24!3.82!Zfp668;;chr7:148514080..148514108,-!p4@Deaf1!0.24!2.55!Deaf1;;chr2:153475178..153475196,+!p1@Dnmt3b!0.24!2.55!Dnmt3b;;chr4:135728181..135728203,+!p2@E2f2!0.24!1.27!E2f2;;chr11:69393894..69393921,+!p1@Trp53!0.23!141.75!Trp53;;chr8:109817363..109817383,+!p2@Nfat5!0.23!31.40!Nfat5;;chr13:67627072..67627115,-!p1@Zfp58!0.23!28.86!Zfp87;;chr10:80813134..80813211,-!p1@Hmg20b!0.23!28.43!Hmg20b;;chr1:75188717..75188804,+!p1@ENSMUST00000125384,p1@ENSMUST00000127625,p1@ENSMUST00000131788,p1@ENSMUST00000134233,p1@ENSMUST00000134378,p1@ENSMUST00000145459,p1@ENSMUST00000151887,p1@ENSMUST00000152233!0.23!20.80!Ankzf1;;chr16:42907676..42907797,+!p1@Zbtb20!0.23!19.52!Zbtb20;;chr2:48805015..48805042,+!p2@Mbd5!0.23!8.49!Mbd5;;chr17:4994697..4994730,+!p4@Arid1b!0.23!6.37!Arid1b;;chr10:5959061..5959104,+!p2@Zbtb2!0.23!5.52!Zbtb2;;chr16:42875952..42875974,+!p4@Zbtb20!0.23!5.09!Zbtb20;;chr18:84758852..84758878,-!p2@Zfp407!0.23!5.09!Zfp407;;chr5:110539087..110539133,+!p1@Zfp605!0.23!3.82!Zfp605;;chr6:47827570..47827593,+!p3@Zfp282!0.23!3.40!Zfp282;;chr10:127080141..127080160,+!p2@Stat6!0.23!3.40!Stat6;;chr4:45024965..45025031,-!p3@Zbtb5!0.23!2.97!Zbtb5;;chr18:55149735..55149776,-!p4@Zfp608!0.23!2.97!Zfp608;;chr17:15701263..15701277,-!p2@Prdm9!0.23!2.97!Prdm9;;chr2:34227524..34227547,-!p2@Pbx3!0.23!2.12!Pbx3;;chr7:31207408..31207450,+!p4@Nfkbid!0.23!1.70!Nfkbid;;chr4:133310214..133310231,-!p11@Arid1a!0.23!1.70!Arid1a;;chr18:55149778..55149798,-!p11@Zfp608!0.23!1.27!Zfp608;;chr5:104182754..104182777,+!p11@Aff1!0.23!0.85!Aff1;;chr5:34530319..34530398,-!p1@Mxd4!0.22!72.57!Mxd4;;chr5:9161692..9161762,-!p1@Dmtf1!0.22!64.51!Dmtf1;;chr10:70700783..70700832,-!p1@Tfam!0.22!57.29!Tfam;;chr15:36937137..36937157,-!p2@Gm10193,p2@Zfp706!0.22!44.99!Zfp706;;chr3:51081233..51081365,-!p1@Elf2!0.22!30.56!Elf2;;chr11:49016967..49017026,+!p1@Zfp62!0.22!25.89!Zfp62;;chr2:28915759..28915807,+!p1@Ttf1!0.22!20.37!Ttf1;;chr11:3189883..3189925,+!p1@Patz1!0.22!19.95!Patz1;;chr11:4604645..4604705,+!p1@Zmat5!0.22!19.10!Zmat5;;chr4:102791976..102792008,+!p2@Mier1!0.22!15.70!Mier1;;chr16:17531112..17531164,-!p1@Thap7!0.22!15.28!Thap7;;chr18:39649430..39649522,-!p2@Nr3c1!0.22!14.00!Nr3c1;;chr9:31088110..31088151,+!p1@Prdm10!0.22!9.76!Prdm10;;chr2:120996843..120996894,-!p1@Zscan29!0.22!8.49!Zscan29;;chr7:6336020..6336068,+!p1@Zfp28!0.22!5.94!Zfp28;;chr17:25152743..25152766,-!p2@Cramp1l!0.22!5.52!Cramp1l;;chr17:34169293..34169320,+!p3@Rxrb!0.22!3.82!Rxrb;;chr7:134519542..134519569,-!p1@Zfp747!0.22!3.82!Zfp747;;chr5:77524231..77524245,-!p3@Hopx!0.22!2.97!Hopx;;chr3:152058408..152058453,+!p5@Gm8261,p5@Zzz3!0.22!2.55!Zzz3;;chr9:72122680..72122693,+!p2@Zfp280d!0.22!2.55!Zfp280d;;chr7:46773162..46773172,+!p2@Zfp619!0.22!1.70!Zfp619;;chr18:3337399..3337422,-!p11@Crem!0.22!1.70!Crem;;chr3:51144740..51144743,-!p7@Elf2!0.22!1.70!Elf2;;chr4:135699731..135699747,+!p1@Id3!0.21!167.21!Id3;;chr5:21290933..21291050,-!p1@Dnajc2!0.21!54.75!Dnajc2;;chr9:44689360..44689406,-!p1@Mll1!0.21!53.90!Mll1;;chr11:87881744..87881791,+!p1@Vezf1!0.21!40.32!Vezf1;;chr7:30553587..30553661,+!p1@Zfp84!0.21!34.38!Zfp84;;chr7:147222284..147222351,+!p1@Zfp511!0.21!33.10!Zfp511;;chr13:59924433..59924504,-!p1@Zcchc6!0.21!32.25!Zcchc6;;chr9:113840256..113840306,+!p1@Ubp1!0.21!30.98!Ubp1;;chr2:84877326..84877362,+!p2@Ssrp1!0.21!30.98!Ssrp1;;chr7:13420322..13420401,+!p1@Zfp110!0.21!28.86!Zfp110;;chr7:13404186..13404214,-!p1@Zfp329!0.21!28.43!Zfp329;;chr2:17986191..17986271,+!p1@Mllt10!0.21!25.04!Mllt10;;chr15:102236700..102236764,+!p1@Sp1!0.21!21.64!Sp1;;chr9:56266431..56266488,+!p2@Hmg20a!0.21!14.43!Hmg20a;;chr4:142802594..142802631,-!p1@Prdm2!0.21!14.00!Prdm2;;chr15:36937113..36937127,-!p3@Gm10193,p3@Zfp706!0.21!13.58!Zfp706;;chr16:17530781..17530882,-!p2@Thap7!0.21!8.06!Thap7;;chr2:83484738..83484749,+!p5@Zc3h15!0.21!5.09!Zc3h15;;chr17:45570455..45570479,-!p2@Cdc5l!0.21!4.67!Cdc5l;;chrX:45807450..45807478,-!p3@Elf4!0.21!4.24!Elf4;;chr5:107125838..107125858,-!p2@Zfp644!0.21!4.24!Zfp644;;chr7:88138585..88138600,+!p2@Zfp592!0.21!3.40!Zfp592;;chr17:44872561..44872615,-!p1@Runx2!0.21!2.55!Runx2;;chr18:76401074..76401118,+!p3@Smad2!0.21!2.55!Smad2;;chr16:3884438..3884470,-!p2@Zfp597!0.21!2.55!Zfp597;;chrX:91368504..91368516,-!p3@Zfx!0.21!2.12!Zfx;;chr17:4995982..4995989,+!p9@Arid1b!0.21!1.70!Arid1b;;chr6:98978868..98978918,-!p6@Foxp1!0.21!1.70!Foxp1;;chr11:100800641..100800669,-!p3@Stat3!0.21!1.70!Stat3;;chr10:127080091..127080100,+!p4@Stat6!0.21!1.27!Stat6;;chr4:48057987..48057996,+!p7@Nr4a3!0.21!0.85!Nr4a3;;chr1:36364572..36364580,+!p2@Arid5a!0.21!0.85!Arid5a;;chr17:79336371..79336414,-!p1@Cebpz!0.20!68.33!Cebpz;;chr5:65194752..65194769,+!p1@Klf3!0.20!47.53!Klf3;;chr13:5860776..5860796,+!p1@Klf6!0.20!34.38!Klf6;;chr9:20264394..20264448,-!p1@Zfp26!0.20!25.46!Zfp26;;chr11:58717675..58717719,-!p1@Zfp39!0.20!9.34!Zfp39;;chr6:133985993..133986029,+!p2@Et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Crem;;chr4:114730254..114730276,+!p2@Tal1!0.17!0.85!Tal1;;chr3:19957878..19957885,+!p2@Hltf!0.17!0.85!Hltf;;chr8:108160409..108160489,+!p1@Ctcf!0.16!75.12!Ctcf;;chrX:71330925..71330991,-!p1@Mecp2!0.16!29.28!Mecp2;;chr4:102787007..102787050,+!p1@Mier1!0.16!20.80!Mier1;;chr1:181476358..181476391,-!p1@Tfb2m!0.16!19.52!Tfb2m;;chr15:76701830..76701883,-!p1@Zfp251!0.16!16.98!Zfp251;;chr13:65380147..65380174,+!p1@Zfp369!0.16!16.55!Zfp369;;chr2:83484721..83484734,+!p3@Zc3h15!0.16!14.43!Zc3h15;;chr5:143942400..143942474,-!p1@Rbak!0.16!13.16!Rbak;;chr4:136604692..136604722,-!p1@Zbtb40!0.16!11.88!Zbtb40;;chr11:53164285..53164302,+!p3@Aff4!0.16!10.19!Aff4;;chr7:71083428..71083518,-!p3@Klf13!0.16!9.34!Klf13;;chr7:13563183..13563249,+!p1@Zfp446!0.16!8.49!Zfp446;;chr13:67162067..67162114,-!p1@Zfp712!0.16!8.06!Zfp712;;chr14:55711198..55711258,-!p1@Zfhx2!0.16!6.79!Zfhx2;;chr6:29998062..29998078,+!p2@Nrf1!0.16!5.52!Nrf1;;chr1:13364202..13364263,-!p3@Ncoa2!0.16!2.97!Ncoa2;;chr7:13063643..13063662,+!p2@Zfp606!0.16!2.55!Zfp606;;chr15:25914217..25914232,+!p3@Zfp622!0.16!1.70!Zfp622;;chrX:137135036..137135064,-!p4@Tsc22d3!0.16!1.70!Tsc22d3;;chr18:76400986..76401016,+!p5@Smad2!0.16!1.70!Smad2;;chr2:103143336..103143367,-!p1@Ehf!0.16!1.27!Ehf;;chr18:35721940..35721951,+!p5@Matr3!0.16!0.85!Matr3;;chr7:6315994..6316007,+!p2@Zfp78!0.16!0.85!Zfp78;;chr12:112277544..112277610,+!p1@Rcor1!0.15!47.11!Rcor1;;chr16:4213951..4213995,-!p@chr16:4213951..4213995,-!0.15!35.65!Crebbp;;chr11:106993428..106993480,-!p1@Bptf!0.15!32.25!Bptf;;chr18:5591866..5591900,+!p1@Zeb1!0.15!30.56!Zeb1;;chr5:143996822..143996930,+!p1@Zfp12!0.15!25.46!Zfp12;;chr13:67654035..67654112,-!p1@Zfp748!0.15!18.25!Zfp748;;chr18:39650303..39650371,-!p1@Nr3c1!0.15!14.00!Nr3c1;;chr18:75527030..75527055,+!p2@Smad7!0.15!7.21!Smad7;;chr1:133904670..133904731,+!p2@Elk4!0.15!5.94!Elk4;;chr4:108131994..108132056,+!p2@Zcchc11!0.15!3.40!Zcchc11;;chr8:107694596..107694619,+!p4@Cbfb!0.15!2.97!Cbfb;;chr17:22362583..22362606,-!p1@Gm4944!0.15!2.97!Gm4944;;chr12:78063146..78063159,-!p2@Max!0.15!2.55!Max;;chr11:95170871..95170900,-!p2@Myst2!0.15!2.55!Myst2;;chr10:41995430..41995458,-!p3@Foxo3!0.15!2.55!Foxo3;;chr16:3744146..3744157,+!p3@Zfp263!0.15!2.12!Zfp263;;chr6:47827547..47827568,+!p4@Zfp282!0.15!2.12!Zfp282;;chr10:5734525..5734569,-!p3@Esr1!0.15!1.27!Esr1;;chr19:9017011..9017032,+!p4@Mta2!0.15!1.27!Mta2;;chr3:51081392..51081407,-!p8@Elf2!0.15!1.27!Elf2;;chr16:42875918..42875940,+!p13@Zbtb20!0.15!1.27!Zbtb20;;chr15:88582079..88582091,+!p1@Gm15583,p1@Zbed4!0.15!1.27!Zbed4;;chr6:72850124..72850210,-!p7@Kcmf1!0.15!0.85!Kcmf1;;chr11:4604619..4604634,+!p2@Zmat5!0.15!0.85!Zmat5;;chrX:103070960..103070973,-!p7@Atrx!0.15!0.85!Atrx;;chr7:31207291..31207314,+!p15@Nfkbid!0.15!0.42!Nfkbid;;chr9:30838391..30838400,+!p9@Zbtb44!0.15!0.42!Zbtb44;;chr8:73222425..73222444,+!p2@Jund!0.15!0.42!Jund;;chr8:79423751..79423763,+!p7@Nr3c2!0.15!0.42!Nr3c2;;chr9:118387300..118387317,+!p1@Eomes!0.15!0.42!Eomes;;chr7:31207480..31207489,+!p13@Nfkbid!0.15!0.42!Nfkbid;;chr7:31207452..31207463,+!p11@Nfkbid!0.15!0.42!Nfkbid;;chr7:52962498..52962512,+!p12@Dbp!0.15!0.42!Dbp;;chr8:87502350..87502362,-!p2@Junb!0.15!0.42!Junb;;chr6:16848460..16848471,-!p5@Tfec!0.15!0.42!Tfec;;chr7:122989672..122989673,-!p20@Sox6!0.15!0.42!Sox6;;chr5:77524043..77524064,-!p9@Hopx!0.15!0.42!Hopx;;chr6:99385340..99385362,-!p11@Foxp1!0.15!0.42!Foxp1;;chr5:77524199..77524210,-!p10@Hopx!0.15!0.42!Hopx;;chr5:77524175..77524186,-!p8@Hopx!0.15!0.42!Hopx;;chr5:31754898..31754907,+!p5@Zfp512!0.15!0.42!Zfp512;;chr2:38570011..38570034,-!p1@Nr5a1!0.15!0.42!Nr5a1;;chr2:168415791..168415802,-!p5@Nfatc2!0.15!0.42!Nfatc2;;chr1:69732797..69732812,-!p5@Ikzf2!0.15!0.42!Ikzf2;;chr2:103143315..103143328,-!p2@Ehf!0.15!0.42!Ehf;;chr2:166885917..166885930,-!p9@Znfx1!0.15!0.42!Znfx1;;chr1:179374764..179374776,+!p5@Zfp238!0.15!0.42!Zfp238;;chrX:7541292..7541317,-!p3@Gata1!0.15!0.42!Gata1;;chrX:7156827..7156838,+!p2@Foxp3!0.15!0.42!Foxp3;;chr17:51951383..51951409,-!p19@Satb1!0.15!0.42!Satb1;;chr16:92826338..92826347,-!p6@Runx1!0.15!0.42!Runx1;;chr16:3872231..3872249,-!p9@Zfp597!0.15!0.42!Zfp597;;chr17:71201226..71201233,-!p16@Tgif1!0.15!0.42!Tgif1;;chr17:44873599..44873623,-!p7@Runx2!0.15!0.42!Runx2;;chr17:71201050..71201078,-!p9@Tgif1!0.15!0.42!Tgif1;;chr19:12871064..12871095,-!p2@Zfp91!0.15!0.42!Zfp91;;chr19:46380346..46380360,+!p6@Nfkb2!0.15!0.42!Nfkb2;;chr17:51965903..51965926,-!p5@Satb1!0.15!0.42!Satb1;;chr16:55819071..55819073,-!p11@Nfkbiz!0.15!0.42!Nfkbiz;;chr18:76400957..76400968,+!p12@Smad2!0.15!0.42!Smad2;;chr17:51965860..51965876,-!p14@Satb1!0.15!0.42!Satb1;;chr15:79178559..79178584,+!p8@Maff!0.15!0.42!Maff;;chr17:51952856..51952876,-!p12@Satb1!0.15!0.42!Satb1;;chr11:23670864..23670877,-!p5@Rel!0.15!0.42!Rel;;chr10:67000811..67000822,+!p3@Egr2!0.15!0.42!Egr2;;chr11:96685444..96685473,-!p5@Nfe2l1!0.15!0.42!Nfe2l1;;chr11:100721492..100721499,+!p5@Stat5a!0.15!0.42!Stat5a;;chr10:20872753..20872775,-!p11@Myb!0.15!0.42!Myb;;chr11:23671279..23671293,-!p8@Rel!0.15!0.4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@@ Line 45: / Line 45: @@
 |is_obsolete=
 |library_id=CNhs13201
-|library_id_phase_based=1:CNhs13201
+|library_id_phase_based=2:CNhs13201
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;11779
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;11779
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/CD41%252b%2520megakaryocyte%2520control%252c%2520donor3.CNhs13201.11779-124A6.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/CD41%252b%2520megakaryocyte%2520control%252c%2520donor3.CNhs13201.11779-124A6.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/CD41%252b%2520megakaryocyte%2520control%252c%2520donor3.CNhs13201.11779-124A6.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/CD41%252b%2520megakaryocyte%2520control%252c%2520donor3.CNhs13201.11779-124A6.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/CD41%252b%2520megakaryocyte%2520control%252c%2520donor3.CNhs13201.11779-124A6.mm9.nobarcode.rdna.fa.gz
 |name=CD41+ megakaryocyte control, donor3
 |namespace=
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13201,LSID1004,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=-0.11779559634038,0,0,0,0,0,-0.077602451280785,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.191893350882575,0,0,0,0,0,0,0,0,0,0,0,0,0.153628809860867,0.161231320496921,0,0,0,0,0,0.037890125049104,-0.057481788022999,0.0924896027964179,-0.984211366477826,-0.269868638010351,0.430970888944806,0,0,0,0,0,0,0,0,0,0,0,0.0876232622974262,0,0,0,0,0.125180370136149,0,0,0.430970888944806,0.49442570108986,0,-0.0689998853314979,0.239129457399521,-0.004462232910216,-0.0365927089968535,0,0,-0.145309149361067,-0.0280015178769855,0,0,-0.0483913062228563,-0.0198349722970736,0.188893190105709,0.352139294104899,0,0,0,0,0,0,0.267763909719488,0.0633180338145394,0.583042614131376,0,0,0,0.226328766088063,0
@@ Line 88: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:11779-124A6;search_select_hide=table117:11779-124A6
 }}

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FF:11779-124A6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:19, 4 June 2020

CNhs13201

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0