FF:32-1B4: Difference between revisions

Latest revision as of 19:09, 4 June 2020

Name:	tongue, adult
Species:	Mouse (Mus musculus)
Library ID:	CNhs10499
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	tongue
dev stage	adult
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005526

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10499		CAGE		DRX009126		DRR010000

Accession ID Mm9

Library id		BAM		CTSS
CNhs10499		DRZ001425		DRZ002808

Accession ID Mm10

Library id		BAM		CTSS
CNhs10499		DRZ012775		DRZ014158

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs10499

0	0
1	0
10	0
100	0
1000	1.018
1001	0.493
1002	0
1003	0.306
1004	0
1005	0.0234
1006	0.587
1007	-0.113
1008	0
1009	0.0804
101	-0.00874
1010	0
1011	0.0752
1012	0
1013	-0.0329
1014	0
1015	-0.155
1016	-0.181
1017	0.725
1018	0.571
1019	0
102	0
1020	0
1021	0
1022	0.866
1023	0
1024	0.343
1025	0
1026	0
1027	0
1028	0
1029	-0.0136
103	-0.061
1030	0
1031	-0.352
1032	0.101
1033	0.0887
1034	0.0887
1035	0.0887
1036	-0.106
1037	0
1038	-0.0729
1039	0.395
104	0
1040	0.0569
1041	0.162

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10499

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.227
MA0003.1	MA0003.1	0.203
MA0004.1	MA0004.1	0.635
MA0006.1	MA0006.1	0.148
MA0007.1	MA0007.1	0.656
MA0009.1	MA0009.1	0.311
MA0014.1	MA0014.1	0.519
MA0017.1	MA0017.1	0.0575
MA0018.2	MA0018.2	0.12
MA0019.1	MA0019.1	0.864
MA0024.1	MA0024.1	7.56137e-5
MA0025.1	MA0025.1	0.138
MA0027.1	MA0027.1	0.386
MA0028.1	MA0028.1	0.00515
MA0029.1	MA0029.1	0.541
MA0030.1	MA0030.1	0.0104
MA0031.1	MA0031.1	0.032
MA0035.2	MA0035.2	0.00797
MA0038.1	MA0038.1	0.283
MA0039.2	MA0039.2	0.00598
MA0040.1	MA0040.1	0.144
MA0041.1	MA0041.1	0.95
MA0042.1	MA0042.1	0.559
MA0043.1	MA0043.1	0.117
MA0046.1	MA0046.1	1.07965e-13
MA0047.2	MA0047.2	0.0125
MA0048.1	MA0048.1	0.0203
MA0050.1	MA0050.1	0.184
MA0051.1	MA0051.1	0.794
MA0052.1	MA0052.1	5.20507e-50
MA0055.1	MA0055.1	0.0179
MA0057.1	MA0057.1	0.0466
MA0058.1	MA0058.1	0.425
MA0059.1	MA0059.1	0.112
MA0060.1	MA0060.1	1.05901e-5
MA0061.1	MA0061.1	0.65
MA0062.2	MA0062.2	6.70067e-6
MA0065.2	MA0065.2	0.12
MA0066.1	MA0066.1	0.371
MA0067.1	MA0067.1	0.991
MA0068.1	MA0068.1	0.338
MA0069.1	MA0069.1	0.422
MA0070.1	MA0070.1	0.862
MA0071.1	MA0071.1	0.728
MA0072.1	MA0072.1	0.467
MA0073.1	MA0073.1	0.304
MA0074.1	MA0074.1	0.311
MA0076.1	MA0076.1	0.00107
MA0077.1	MA0077.1	0.16
MA0078.1	MA0078.1	0.41
MA0079.2	MA0079.2	0.0205
MA0080.2	MA0080.2	0.00114
MA0081.1	MA0081.1	0.0416
MA0083.1	MA0083.1	0.00397
MA0084.1	MA0084.1	0.725
MA0087.1	MA0087.1	0.567
MA0088.1	MA0088.1	0.983
MA0090.1	MA0090.1	0.0288
MA0091.1	MA0091.1	0.668
MA0092.1	MA0092.1	0.34
MA0093.1	MA0093.1	0.595
MA0099.2	MA0099.2	2.16612e-15
MA0100.1	MA0100.1	0.0282
MA0101.1	MA0101.1	0.389
MA0102.2	MA0102.2	0.333
MA0103.1	MA0103.1	0.0118
MA0104.2	MA0104.2	0.182
MA0105.1	MA0105.1	0.578
MA0106.1	MA0106.1	0.156
MA0107.1	MA0107.1	0.606
MA0108.2	MA0108.2	4.02479e-21
MA0111.1	MA0111.1	0.817
MA0112.2	MA0112.2	0.00183
MA0113.1	MA0113.1	0.838
MA0114.1	MA0114.1	0.267
MA0115.1	MA0115.1	0.00534
MA0116.1	MA0116.1	0.903
MA0117.1	MA0117.1	0.865
MA0119.1	MA0119.1	0.524
MA0122.1	MA0122.1	0.348
MA0124.1	MA0124.1	0.78
MA0125.1	MA0125.1	0.377
MA0131.1	MA0131.1	0.219
MA0135.1	MA0135.1	0.199
MA0136.1	MA0136.1	4.71533e-5
MA0137.2	MA0137.2	0.827
MA0138.2	MA0138.2	1.76694e-4
MA0139.1	MA0139.1	0.986
MA0140.1	MA0140.1	0.0293
MA0141.1	MA0141.1	0.0399
MA0142.1	MA0142.1	0.154
MA0143.1	MA0143.1	0.206
MA0144.1	MA0144.1	0.409
MA0145.1	MA0145.1	0.0073
MA0146.1	MA0146.1	0.335
MA0147.1	MA0147.1	0.218
MA0148.1	MA0148.1	0.0433
MA0149.1	MA0149.1	0.643
MA0150.1	MA0150.1	0.00658
MA0152.1	MA0152.1	0.998
MA0153.1	MA0153.1	2.13702e-9
MA0154.1	MA0154.1	0.0601
MA0155.1	MA0155.1	0.668
MA0156.1	MA0156.1	6.89293e-4
MA0157.1	MA0157.1	0.0249
MA0159.1	MA0159.1	0.103
MA0160.1	MA0160.1	0.057
MA0162.1	MA0162.1	0.537
MA0163.1	MA0163.1	0.943
MA0164.1	MA0164.1	0.369
MA0258.1	MA0258.1	0.00985
MA0259.1	MA0259.1	0.166

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10499

Novel motif	Logo	P-value
1	1	0.365
10	10	0.845
100	100	0.816
101	101	0.368
102	102	0.556
103	103	0.591
104	104	0.947
105	105	0.133
106	106	0.0457
107	107	0.103
108	108	0.741
109	109	0.372
11	11	0.739
110	110	0.624
111	111	0.13
112	112	0.785
113	113	0.666
114	114	0.222
115	115	0.148
116	116	0.251
117	117	0.495
118	118	0.199
119	119	0.0126
12	12	0.625
120	120	0.625
121	121	0.202
122	122	0.346
123	123	0.63
124	124	0.354
125	125	0.479
126	126	0.439
127	127	0.213
128	128	0.125
129	129	0.472
13	13	0.0237
130	130	0.874
131	131	0.386
132	132	0.832
133	133	0.968
134	134	0.867
135	135	0.982
136	136	0.167
137	137	0.82
138	138	0.847
139	139	0.0595
14	14	0.119
140	140	0.0975
141	141	0.132
142	142	0.579
143	143	0.173
144	144	0.775
145	145	0.613
146	146	0.755
147	147	0.882
148	148	0.554
149	149	0.173
15	15	0.82
150	150	0.54
151	151	0.182
152	152	0.0265
153	153	0.571
154	154	0.926
155	155	0.0845
156	156	0.559
157	157	0.0887
158	158	0.773
159	159	0.342
160	160	0.412
161	161	0.11
162	162	0.329
163	163	0.764
164	164	0.708
165	165	0.127
166	166	0.691
167	167	0.0245
168	168	0.128
169	169	0.00537
17	17	0.0326
18	18	0.695
19	19	0.0967
2	2	0.258
20	20	0.329
21	21	0.679
22	22	0.165
23	23	0.123
24	24	0.33
25	25	0.851
26	26	0.174
27	27	0.689
28	28	0.615
29	29	0.695
3	3	0.63
30	30	0.1
31	31	0.709
32	32	0.825
33	33	0.742
34	34	0.483
35	35	0.348
36	36	0.0491
37	37	0.0692
38	38	0.736
39	39	0.333
4	4	0.641
40	40	0.484
41	41	0.154
42	42	0.735
43	43	0.469
44	44	0.829
45	45	0.185
46	46	0.304
47	47	0.698
48	48	0.702
49	49	0.682
5	5	0.624
50	50	0.438
51	51	0.687
52	52	0.183
53	53	0.419
54	54	0.235
55	55	0.946
56	56	0.326
57	57	0.766
58	58	0.466
59	59	0.156
6	6	0.805
60	60	0.0791
61	61	0.588
62	62	0.357
63	63	0.0694
64	64	0.92
65	65	0.411
66	66	0.956
67	67	0.238
68	68	0.321
69	69	0.283
7	7	0.242
70	70	0.0428
71	71	0.218
72	72	0.778
73	73	0.0416
74	74	0.842
75	75	0.778
76	76	0.0402
77	77	0.0246
78	78	0.214
79	79	0.899
8	8	0.821
80	80	0.974
81	81	0.0855
82	82	0.193
83	83	0.611
84	84	0.0595
85	85	0.00828
86	86	0.218
87	87	0.151
88	88	0.824
89	89	0.117
9	9	0.269
90	90	0.675
91	91	0.575
92	92	0.327
93	93	0.329
94	94	0.553
95	95	0.54
96	96	0.162
97	97	0.479
98	98	0.849
99	99	0.417

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10499

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011310 mouse tongue- adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001723 (tongue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000020 (sense organ)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0004456 (entire sense organ system)
0001033 (gustatory system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011310 (mouse tongue- adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0008814 (pharyngeal arch system)
UBERON:0010056 (future tongue)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005526
+|accession_numbers=CAGE;DRX009126;DRR010000;DRZ001425;DRZ002808;DRZ012775;DRZ014158
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001723,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0001555,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0004456,UBERON:0001033
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:57796615..57796687,+!p1@Pax9!2.37!235.35!Pax9;;chr2:120365588..120365602,-!p2@Zfp106!2.27!302.23!Zfp106;;chr4:135129538..135129558,-!p1@Grhl3!2.19!225.37!Grhl3;;chr5:77543897..77543911,-!p2@Hopx!2.16!268.68!Hopx;;chr11:121380640..121380655,-!p1@Zfp750!2.09!199.07!Zfp750;;chr13:83643159..83643226,+!p3@Mef2c!2.05!112.00!Mef2c;;chr13:55932591..55932622,-!p1@Pitx1!2.02!124.25!Pitx1;;chr2:103143336..103143367,-!p1@Ehf!2.01!159.62!Ehf;;chr9:31720843..31720888,-!p1@Barx2!1.88!83.21!Barx2;;chr16:25801993..25802014,+!p1@Trp63!1.87!73.69!Trp63;;chr3:99057269..99057306,+!p1@Tbx15!1.84!81.85!Tbx15;;chr7:119885539..119885574,+!p3@Tead1!1.83!67.11!Tead1;;chr11:94981424..94981439,+!p1@Dlx3!1.80!70.74!Dlx3;;chr19:5560600..5560617,-!p1@Ovol1!1.79!72.33!Ovol1;;chr13:55937432..55937460,-!p4@Pitx1!1.73!52.15!Pitx1;;chr11:121380594..121380609,-!p2@Zfp750!1.66!76.41!Zfp750;;chr11:98636531..98636559,-!p1@Nr1d1!1.64!233.31!Nr1d1;;chr4:87452200..87452229,-!p2@Mllt3!1.63!85.70!Mllt3;;chr5:77543935..77543947,-!p4@Hopx!1.62!40.58!Hopx;;chr3:99057677..99057730,+!p2@Tbx15!1.60!38.54!Tbx15;;chr4:87452180..87452196,-!p3@Mllt3!1.59!73.46!Mllt3;;chr2:103143315..103143328,-!p2@Ehf!1.59!37.86!Ehf;;chr14:69808725..69808748,+!p1@Nkx3-1!1.57!36.05!Nkx3-1;;chr11:121380611..121380625,-!p3@Zfp750!1.54!40.36!Zfp750;;chr13:40829137..40829205,-!p1@Tfap2a!1.54!37.86!Tfap2a;;chr16:18587076..18587106,-!p1@Tbx1!1.53!46.03!Tbx1;;chr13:83643136..83643158,+!p7@Mef2c!1.53!32.88!Mef2c;;chr11:98636508..98636524,-!p3@Nr1d1!1.52!39.68!Nr1d1;;chr12:74147689..74147711,-!p1@Six1!1.49!64.39!Six1;;chr3:128916868..128916890,+!p1@Pitx2!1.48!40.13!Pitx2;;chr10:106931775..106931798,-!p1@Myf6!1.47!28.57!Myf6;;chr2:147190749..147190769,+!p1@Pax1!1.47!28.57!Pax1;;chr16:94085471..94085495,+!p1@Sim2!1.46!28.11!Sim2;;chr12:57792498..57792515,+!p2@Pax9!1.44!26.53!Pax9;;chr13:55937467..55937516,-!p3@Pitx1!1.44!26.30!Pitx1;;chr17:14011485..14011507,+!p2@Mllt4!1.44!26.30!Mllt4;;chr16:25684232..25684285,+!p2@Trp63!1.43!26.07!Trp63;;chr11:69468531..69468557,+!p1@Sox15!1.43!25.85!Sox15;;chr5:20361092..20361119,-!p4@Phtf2!1.41!24.94!Phtf2;;chr12:25257265..25257294,+!p2@Grhl1!1.39!23.58!Grhl1;;chr4:55545337..55545357,-!p1@Klf4!1.38!325.81!Klf4;;chr17:27865882..27865901,-!p1@Spdef!1.38!22.90!Spdef;;chr4:46356509..46356527,+!p1@Foxe1!1.36!21.99!Foxe1;;chr11:96880072..96880079,+!p1@Sp6!1.35!21.31!Sp6;;chr14:99697871..99697934,+!p1@Klf5!1.34!396.55!Klf5;;chr16:43363190..43363242,+!p2@Zbtb20!1.34!63.03!Zbtb20;;chr13:55932624..55932641,-!p2@Pitx1!1.33!20.18!Pitx1;;chr7:19946556..19946611,+!p1@Ppp1r13l!1.32!76.63!Ppp1r13l;;chr13:83643232..83643254,+!p5@Mef2c!1.30!18.82!Mef2c;;chr11:96690797..96690813,-!p1@Nfe2l1!1.29!344.18!Nfe2l1;;chr10:44178521..44178557,-!p1@Prdm1!1.28!31.74!Prdm1;;chr11:78200071..78200100,-!p1@Foxn1!1.28!17.91!Foxn1;;chr15:102751603..102751630,+!p1@Hoxc13!1.26!17.23!Hoxc13;;chr18:76219118..76219155,+!p1@Zbtb7c!1.25!29.47!Zbtb7c;;chr13:53568104..53568156,-!p1@Msx2!1.23!23.58!Msx2;;chr19:5560570..5560582,-!p2@Ovol1!1.23!15.87!Ovol1;;chr5:135582751..135582788,+!p1@Mlxipl!1.20!58.72!Mlxipl;;chr3:34548909..34548927,+!p1@Sox2!1.19!24.26!Sox2;;chr13:40826961..40827001,-!p4@Tfap2a!1.16!13.60!Tfap2a;;chr12:25257141..25257173,+!p1@Grhl1!1.15!26.75!Grhl1;;chr4:135129447..135129467,-!p2@Grhl3!1.12!14.74!Grhl3;;chr7:52960555..52960662,+!p1@Dbp!1.11!101.12!Dbp;;chr7:52960730..52960762,+!p3@Dbp!1.11!15.19!Dbp;;chr12:58646974..58647003,-!p1@Foxa1!1.10!15.64!Foxa1;;chr2:172375081..172375105,+!p1@Tfap2c!1.10!11.56!Tfap2c;;chr12:39507680..39507715,+!p2@Etv1!1.09!22.22!Etv1;;chr7:52960700..52960719,+!p2@Dbp!1.09!14.06!Dbp;;chr12:25257176..25257190,+!p3@Grhl1!1.08!12.47!Grhl1;;chr4:87452167..87452178,-!p8@Mllt3!1.07!10.66!Mllt3;;chr12:37835141..37835194,+!p1@Meox2!1.06!32.42!Meox2;;chr7:119885584..119885594,+!p8@Tead1!1.06!10.43!Tead1;;chr2:147190725..147190747,+!p2@Pax1!1.05!10.20!Pax1;;chr14:19071466..19071550,-!p1@Nr1d2!1.04!69.38!Nr1d2;;chr1:169548377..169548430,+!p1@Rxrg!1.04!9.98!Rxrg;;chr2:103264245..103264268,+!p2@Elf5!1.04!9.98!Elf5;;chr9:69137716..69137744,+!p1@Rora!1.03!61.90!Rora;;chr5:144951153..144951203,+!p1@Bhlha15!1.03!14.28!Bhlha15;;chr10:44178375..44178390,-!p2@Prdm1!1.02!12.92!Prdm1;;chr2:103264213..103264233,+!p1@Elf5!1.02!9.52!Elf5;;chr16:18587052..18587063,-!p3@Tbx1!1.01!9.30!Tbx1;;chr6:86619104..86619119,-!p1@Mxd1!1.00!75.50!Mxd1;;chr4:148178559..148178603,+!p1@Casz1!1.00!26.30!Casz1;;chr10:44178493..44178520,-!p3@Prdm1!1.00!12.70!Prdm1;;chr10:106931803..106931817,-!p2@Myf6!1.00!9.07!Myf6;;chr11:21901608..21901634,-!p1@Otx1!1.00!9.07!Otx1;;chr18:76219161..76219176,+!p4@Zbtb7c!0.99!11.56!Zbtb7c;;chr3:90046995..90047031,-!p2@Creb3l4!0.99!11.11!Creb3l4;;chr9:31721051..31721068,-!p3@Barx2!0.99!8.84!Barx2;;chr19:45225149..45225186,+!p1@Tlx1!0.99!8.84!Tlx1;;chr3:99057256..99057268,+!p3@Tbx15!0.98!8.62!Tbx15;;chr13:40825465..40825469,-!p2@Tfap2a!0.98!8.62!Tfap2a;;chr16:94085162..94085179,+!p3@Sim2!0.97!8.39!Sim2;;chr11:96690779..96690790,-!p3@Nfe2l1!0.96!20.18!Nfe2l1;;chr9:31720746..31720762,-!p4@Barx2!0.96!8.16!Barx2;;chr9:31720903..31720918,-!p2@Barx2!0.96!8.16!Barx2;;chr15:102087880..102087927,-!p2@Rarg!0.95!18.59!Rarg;;chr7:20162663..20162678,+!p1@Zfp296!0.95!10.43!Zfp296;;chr6:6832076..6832092,-!p1@Dlx5!0.95!9.30!Dlx5;;chr6:131338435..131338482,-!p1@Csda!0.94!759.32!Csda;;chr12:109242266..109242295,-!p1@Bcl11b!0.94!66.89!Bcl11b;;chr11:121381087..121381108,-!p4@Zfp750!0.93!7.48!Zfp750;;chr16:18588291..18588301,-!p2@Tbx1!0.93!7.48!Tbx1;;chr4:148178459..148178482,+!p4@Casz1!0.93!7.48!Casz1;;chr3:94176733..94176794,+!p1@Rorc!0.92!59.40!Rorc;;chr13:31650185..31650201,+!p1@Foxq1!0.92!26.53!Foxq1;;chr14:118636214..118636235,-!p1@Sox21!0.92!8.84!Sox21;;chr6:145814003..145814056,-!p1@Bhlhe41!0.90!21.09!Bhlhe41;;chr4:148178529..148178548,+!p3@Casz1!0.90!16.78!Casz1;;chr5:24108047..24108106,-!p3@Smarcd3!0.89!12.24!Smarcd3;;chr6:128250471..128250519,-!p1@Tead4!0.88!13.60!Tead4;;chr12:25257114..25257131,+!p4@Grhl1!0.87!8.39!Grhl1;;chr4:55545051..55545110,-!p2@Klf4!0.87!8.16!Klf4;;chr11:96684043..96684069,-!p9@Nfe2l1!0.87!6.35!Nfe2l1;;chr13:31717548..31717596,+!p1@Foxf2!0.86!12.92!Foxf2;;chr17:87153462..87153473,+!p3@Epas1!0.85!24.26!Epas1;;chr12:37835120..37835133,+!p2@Meox2!0.85!8.84!Meox2;;chr11:78200195..78200211,-!p2@Foxn1!0.85!6.12!Foxn1;;chr7:52071956..52071978,-!p1@Atf5!0.84!204.28!Atf5;;chr15:50721588..50721610,-!p1@Trps1!0.84!64.39!Trps1;;chr1:194979361..194979373,+!p2@Irf6!0.84!8.16!Irf6;;chr11:98636400..98636418,-!p4@Nr1d1!0.84!7.94!Nr1d1;;chr7:123182248..123182264,-!p3@Sox6!0.84!7.26!Sox6;;chr12:37835203..37835218,+!p3@Meox2!0.84!7.26!Meox2;;chr3:128917187..128917223,+!p2@Pitx2!0.84!7.03!Pitx2;;chr12:75002389..75002406,+!p4@Hif1a!0.84!5.89!Hif1a;;chr9:63514630..63514652,-!p8@Smad3!0.84!5.89!Smad3;;chr4:124805061..124805087,-!p1@Zc3h12a!0.82!18.37!Zc3h12a;;chr15:50721640..50721654,-!p7@Trps1!0.82!9.07!Trps1;;chr8:124984566..124984595,-!p1@Snai3!0.82!8.84!Snai3;;chr17:26978409..26978442,-!p1@Nkx2-5!0.82!5.67!Nkx2-5;;chr10:106931839..106931851,-!p3@Myf6!0.82!5.67!Myf6;;chr2:160192793..160192809,-!p1@Mafb!0.81!90.01!Mafb;;chr11:98636575..98636607,-!p2@Nr1d1!0.81!21.31!Nr1d1;;chr3:99100443..99100454,+!p13@Tbx15!0.81!5.44!Tbx15;;chr8:79426176..79426275,+!p1@Nr3c2!0.80!28.34!Nr3c2;;chr3:34548946..34548972,+!p2@Sox2!0.80!5.89!Sox2;;chr4:135840573..135840601,+!p1@Zfp46!0.79!43.76!Zfp46;;chr5:76733981..76734018,-!p3@Clock!0.79!11.56!Clock;;chr10:44178474..44178487,-!p4@Prdm1!0.79!7.71!Prdm1;;chr6:6831986..6832007,-!p4@Dlx5!0.79!5.21!Dlx5;;chr10:67599319..67599360,-!p2@Arid5b!0.78!60.99!Arid5b;;chr5:24107993..24108036,-!p2@Smarcd3!0.78!12.70!Smarcd3;;chr5:24107903..24107917,-!p6@Smarcd3!0.78!6.35!Smarcd3;;chr12:37835248..37835260,+!p4@Meox2!0.78!4.99!Meox2;;chr19:5447692..5447711,+!p2@Fosl1!0.78!4.99!Fosl1;;chr2:103252231..103252256,+!p4@Elf5!0.78!4.99!Elf5;;chr7:52963269..52963305,+!p4@Dbp!0.77!7.03!Dbp;;chr15:103170516..103170531,-!p2@Zfp385a!0.76!12.02!Zfp385a;;chr13:55932739..55932756,-!p5@Pitx1!0.76!4.76!Pitx1;;chr1:136186574..136186592,+!p1@Myog!0.76!4.76!Myog;;chr1:194979315..194979359,+!p1@Irf6!0.75!31.06!Irf6;;chr2:168415815..168415872,-!p1@Nfatc2!0.75!27.43!Nfatc2;;chr13:117099847..117099907,-!p1@Isl1!0.75!9.07!Isl1;;chr11:98636321..98636332,-!p8@Nr1d1!0.75!5.67!Nr1d1;;chr15:81977802..81977828,+!p2@Srebf2!0.74!42.17!Srebf2;;chr5:120121020..120121049,+!p1@Tbx3!0.74!30.61!Tbx3;;chr15:103170533..103170556,-!p1@Zfp385a!0.74!18.37!Zfp385a;;chr4:55545152..55545194,-!p3@Klf4!0.74!5.44!Klf4;;chr6:6831950..6831985,-!p2@Dlx5!0.74!4.99!Dlx5;;chr9:63514609..63514620,-!p10@Smad3!0.74!4.53!Smad3;;chr8:87297280..87297326,-!p2@Nfix!0.73!11.11!Nfix;;chr6:128250380..128250442,-!p2@Tead4!0.73!5.67!Tead4;;chr7:52960780..52960793,+!p5@Dbp!0.73!5.21!Dbp;;chr2:75542527..75542590,-!p1@Nfe2l2!0.72!423.08!Nfe2l2;;chr7:123174606..123174636,-!p5@Sox6!0.72!5.67!Sox6;;chr11:98636373..98636387,-!p5@Nr1d1!0.72!4.99!Nr1d1;;chr3:99100425..99100436,+!p14@Tbx15!0.72!4.31!Tbx15;;chr5:65194752..65194769,+!p1@Klf3!0.71!155.99!Klf3;;chr10:80599248..80599261,+!p3@Zbtb7a!0.71!7.94!Zbtb7a;;chr7:53631837..53631850,+!p1@Myod1!0.71!4.08!Myod1;;chr7:52960663..52960677,+!p6@Dbp!0.71!4.08!Dbp;;chr3:128918394..128918413,+!p5@Pitx2!0.71!4.08!Pitx2;;chr13:40829337..40829360,-!p5@Tfap2a!0.71!4.08!Tfap2a;;chr10:80889867..80889924,-!p1@Nfic!0.70!128.10!Nfic;;chr5:20387850..20387869,-!p1@Phtf2!0.70!46.25!Phtf2;;chr15:81633165..81633188,+!p2@Tef!0.70!36.96!Tef;;chr9:69137672..69137702,+!p2@Rora!0.70!19.05!Rora;;chr6:145813905..145813932,-!p2@Bhlhe41!0.70!8.16!Bhlhe41;;chr8:87324243..87324277,-!p1@Nfix!0.69!107.47!Nfix;;chr8:28087609..28087634,+!p1@Zfp703!0.69!102.48!Zfp703;;chr5:125538737..125538781,-!p2@Ncor2!0.69!15.64!Ncor2;;chr13:31650026..31650045,+!p2@Foxq1!0.69!7.03!Foxq1;;chr15:85566184..85566238,+!p1@Ppara!0.69!6.12!Ppara;;chr9:31720817..31720829,-!p5@Barx2!0.69!3.85!Barx2;;chr9:55388997..55389016,+!p1@Isl2!0.69!3.85!Isl2;;chr12:87762578..87762612,+!p1@Esrrb!0.69!3.85!Esrrb;;chr3:1289028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@@ Line 41: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011310
 |is_obsolete=
+|library_id=CNhs10499
+|library_id_phase_based=2:CNhs10499
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;32
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;32
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/tongue%252c%2520adult.CNhs10499.32-1B4.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/tongue%252c%2520adult.CNhs10499.32-1B4.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/tongue%252c%2520adult.CNhs10499.32-1B4.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/tongue%252c%2520adult.CNhs10499.32-1B4.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/tongue%252c%2520adult.CNhs10499.32-1B4.mm9.nobarcode.rdna.fa.gz
 |name=tongue, adult
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10499,LSID648,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=0.0686955784642675,0,0,0,0,0,0.442667821235622,0,0.0269156667136893,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.103144228884835,0,0,0,0,0,0.162403313502186,0,0,0,0,0,0,0.00374013823408859,0.12771424485736,0,0,0,0,0,0.144834370696176,-0.0483116961173005,0.139000418873104,-0.440884212429843,0.300763556954525,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0.0094698461346796,0,0.0887491219977394,0,0.0152821711596574,-0.310650657339386,0.12224178039985,0.0666380759239667,0,0,0,0,0.0887491219977394,0,0,0.000250012550028655,-0.0817253580714798,0.00991752715783194,0,0,0,0,0,0,-0.0397656966750048,-0.321622662875793,-0.129636590645933,0,0,0,0,0.0843993328464614
@@ Line 83: / Line 97: @@
 |top_motifs=HOX{A4,D4}:3.95839818082;MYOD1:3.36010449997;FOS_FOS{B,L1}_JUN{B,D}:3.341260779;HMX1:3.0253051696;MEF2{A,B,C,D}:2.99298771809;NFE2L2:2.96092411292;ZNF148:2.88530711017;AR:2.86048200384;FOSL2:2.8036262945;NFE2:2.65375763751;TBP:2.52062351239;CRX:2.43213458867;BACH2:2.33320119489;T:2.32835812538;TFAP2{A,C}:2.26776157556;TP53:1.97834476744;TBX4,5:1.8613739658;NKX3-2:1.80493820889;TFCP2:1.7709202014;TGIF1:1.71647913958;NFATC1..3:1.69608014168;TFAP4:1.63471191967;FOXN1:1.53049062178;PAX2:1.50261689857;ESR1:1.48100541206;GCM1,2:1.47799838457;FOXQ1:1.47085932333;ESRRA:1.46400528763;NKX2-2,8:1.43905366352;NKX2-1,4:1.42681016537;GTF2A1,2:1.42065807329;FOXO1,3,4:1.36823784678;SNAI1..3:1.36409917904;FOX{D1,D2}:1.36094459637;bHLH_family:1.30215388086;MAFB:1.23786562091;NKX2-3_NKX2-5:1.22911475724;PAX5:1.20881263113;SMAD1..7,9:1.18838344306;TEAD1:1.1871928048;NFE2L1:1.18233774281;LEF1_TCF7_TCF7L1,2:1.18204483889;TAL1_TCF{3,4,12}:1.10755781176;NR5A1,2:1.02196147916;NR3C1:1.00573322943;EBF1:0.944647974734;GLI1..3:0.938413254712;ALX1:0.936349909371;EP300:0.912438763959;SP1:0.894284055115;ZIC1..3:0.873297376126;BPTF:0.846878513581;FOXL1:0.83178132915;ZEB1:0.826357409978;SRF:0.777844969971;RBPJ:0.776720933879;NANOG:0.733812211872;ATF6:0.722254422463;VSX1,2:0.715888971562;NR1H4:0.711822292628;SREBF1,2:0.710403309132;ALX4:0.678493725522;MYFfamily:0.671624077655;STAT5{A,B}:0.669836125687;HSF1,2:0.667246193637;HOX{A5,B5}:0.664985663121;NHLH1,2:0.630753195499;SOX5:0.611067199374;CEBPA,B_DDIT3:0.610990922129;SPZ1:0.610821374123;FOXA2:0.610470059262;NFIX:0.576097835051;HAND1,2:0.569219234354;RFX2..5_RFXANK_RFXAP:0.561178273823;IKZF1:0.502806079148;LMO2:0.502206875002;XCPE1{core}:0.481888009748;DMAP1_NCOR{1,2}_SMARC:0.448388248683;PAX1,9:0.435050722859;KLF4:0.422564961356;ATF4:0.41812956217;FOX{I1,J2}:0.412328517268;TLX2:0.402850834302;HLF:0.285207710024;GTF2I:0.271175251718;TLX1..3_NFIC{dimer}:0.233514761554;TOPORS:0.226411069371;FOX{F1,F2,J1}:0.21697392753;PDX1:0.213072193607;HIC1:0.209569644751;AIRE:0.191633846286;ATF2:0.172204330419;MAZ:0.171062287379;HBP1_HMGB_SSRP1_UBTF:0.141869504259;ZNF238:0.136910598081;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.125059739193;PBX1:0.0974187772399;POU3F1..4:0.0931834368963;MTF1:0.0807568309443;EN1,2:0.0728432013487;HIF1A:0.0480802433246;RXR{A,B,G}:0.0437330966202;NFIL3:0.0239713121023;IRF7:-0.00932307512736;IRF1,2:-0.0183781430703;ETS1,2:-0.0295500136974;HMGA1,2:-0.0435424841264;STAT2,4,6:-0.0453883968167;MYBL2:-0.056371596068;REST:-0.0587720582529;RXRA_VDR{dimer}:-0.071367102134;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0843026836753;NFKB1_REL_RELA:-0.0980061912001;PATZ1:-0.112125366046;GFI1B:-0.113430665478;TEF:-0.116301880593;PPARG:-0.120546121913;GATA4:-0.126304464092;SPI1:-0.157412241643;ATF5_CREB3:-0.181141744713;PITX1..3:-0.216973299417;GFI1:-0.228191646925;RORA:-0.240554431995;HOXA9_MEIS1:-0.272944976282;PRDM1:-0.274108455691;ELF1,2,4:-0.299004073204;ZNF143:-0.321351714338;SOX{8,9,10}:-0.328905907271;LHX3,4:-0.334520886539;YY1:-0.339410303263;MED-1{core}:-0.36153802339;TFAP2B:-0.380726613843;IKZF2:-0.380894487878;ZNF384:-0.391867457226;EGR1..3:-0.398249463326;AHR_ARNT_ARNT2:-0.40362879564;POU6F1:-0.411668517439;MZF1:-0.412823301443;FOXP1:-0.456656522591;HES1:-0.476312384605;HNF4A_NR2F1,2:-0.487862832345;CREB1:-0.488165382324;JUN:-0.488512742557;CDC5L:-0.496101037172;NKX6-1,2:-0.524373917327;UFEwm:-0.5324735369;FOXP3:-0.549994372331;PAX8:-0.581220820844;ZBTB6:-0.584491708501;POU1F1:-0.58771209921;PRRX1,2:-0.631031211907;SOX2:-0.633310622491;FOXM1:-0.692099142013;DBP:-0.703567878533;RREB1:-0.733363049888;MTE{core}:-0.737328152417;NRF1:-0.794979791741;ELK1,4_GABP{A,B1}:-0.796289634402;SPIB:-0.805761018926;CUX2:-0.816965655045;HNF1A:-0.823993742815;RFX1:-0.824465546088;RUNX1..3:-0.826541765194;ARID5B:-0.842024588428;ZFP161:-0.867017440845;POU2F1..3:-0.869633630972;BREu{core}:-0.921283530638;SOX17:-0.948972972473;GATA6:-0.950147587773;MYB:-0.960402661976;NR6A1:-0.986706427061;NKX3-1:-1.03018849275;NANOG{mouse}:-1.22422540482;POU5F1:-1.23437609478;PAX6:-1.23885926087;ADNP_IRX_SIX_ZHX:-1.24391828606;ONECUT1,2:-1.24855398697;TFDP1:-1.2566719932;E2F1..5:-1.36661351651;EVI1:-1.39456887719;OCT4_SOX2{dimer}:-1.47684123818;ZNF423:-1.52478450607;STAT1,3:-1.62585210989;NFY{A,B,C}:-1.64934992357;GZF1:-1.76914803197;FOXD3:-1.85658708306;ZBTB16:-1.97232876432;CDX1,2,4:-2.01638003698;PAX4:-2.19110467982
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:32-1B4;search_select_hide=table117:32-1B4
 }}

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FF:32-1B4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:09, 4 June 2020

CNhs10499

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0