FFCP PHASE1:Hg19::chr10:105211353..105211386,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:105211353..105211386,-
|short_description=p4@CALHM2
|description=CAGE_peak_4_at_CALHM2_5end
|association_with_transcript=-8bp_to_ENST00000474797_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51063 | |EntrezGene=51063 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23493 | |HGNC=23493 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-8bp_to_ENST00000474797_5end | |||
|cluster_id=chr10:105211353..105211386,- | |||
|coexpression_cluster_id=C193 | |||
|description=CAGE_peak_4_at_CALHM2_5end | |||
|id=chr10:105211353..105211386,- | |||
|ontology_enrichment_celltype=CL:0002009!1.79e-15!65;CL:0002194!5.21e-15!63;CL:0000576!5.21e-15!63;CL:0000040!5.21e-15!63;CL:0000559!5.21e-15!63;CL:0000048!3.58e-13!430;CL:0002057!5.16e-13!42;CL:0000860!7.30e-13!45;CL:0000057!1.35e-12!75;CL:0000557!1.46e-12!71;CL:0000055!7.02e-12!180;CL:0000723!7.20e-12!436;CL:0000839!1.36e-11!70;CL:0002320!9.91e-11!365;CL:0000766!2.58e-10!76;CL:0000034!2.96e-10!444;CL:0000134!8.48e-10!358;CL:0000219!2.63e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000473;5.91e-13;39!CL:0000234;5.91e-13;39!CL:0000576;5.90e-11;48!CL:0000860;5.53e-10;33!CL:0002057;5.53e-10;33!CL:0000766;1.93e-07;69!CL:0000235;2.06e-07;6!CL:0002570;5.31e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.60e-21,48;CL:0000234,3.60e-21,48;CL:0002009,5.93e-19,61;CL:0002194,5.96e-19,59;CL:0000576,5.96e-19,59;CL:0000040,5.96e-19,59;CL:0000559,5.96e-19,59;CL:0000557,4.71e-16,67;CL:0000860,5.76e-16,42;CL:0002057,5.76e-16,42;CL:0000839,1.50e-15,66;CL:0000048,2.57e-15,427;CL:0000723,1.48e-14,433;CL:0002320,1.06e-13,361;CL:0000034,1.40e-13,441;CL:0000766,3.34e-13,72;CL:0000134,3.75e-13,354;CL:0000219,4.46e-10,386;CL:0000057,8.77e-09,76;CL:0000763,8.20e-08,108;CL:0000049,8.20e-08,108;CL:0000235,1.60e-07,6;CL:0002570,4.67e-07,8;CL:0002393,5.50e-07,9;CL:0002397,5.50e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.87e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!2.83e-18!167;UBERON:0003081!5.73e-14!216;UBERON:0000926!7.67e-13!448;UBERON:0004120!7.67e-13!448;UBERON:0006603!7.67e-13!448;UBERON:0004765!3.61e-12!101;UBERON:0001434!3.61e-12!101;UBERON:0002371!1.19e-11!80;UBERON:0002193!1.01e-10!112;UBERON:0002390!1.09e-10!102;UBERON:0003061!1.09e-10!102;UBERON:0002384!2.06e-10!375;UBERON:0001474!3.15e-10!86;UBERON:0000479!8.84e-09!787;UBERON:0000468!7.54e-08!659;UBERON:0000467!1.97e-07!625;UBERON:0000480!2.86e-07!626;UBERON:0002405!4.80e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;9.59e-09;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,4.27e-18,167;UBERON:0000926,6.97e-18,315;UBERON:0004120,6.97e-18,315;UBERON:0006603,6.97e-18,315;UBERON:0001434,8.32e-16,100;UBERON:0002371,1.45e-15,76;UBERON:0003081,2.90e-14,203;UBERON:0001474,2.91e-14,82;UBERON:0002390,4.79e-14,98;UBERON:0003061,4.79e-14,98;UBERON:0002384,1.62e-13,371;UBERON:0002405,4.05e-13,93;UBERON:0002193,8.51e-13,108;UBERON:0004765,1.64e-12,90;UBERON:0001013,6.58e-09,14 | |||
|phase1_expression=0.181678379270557,0.214100523890983,1.12763523276777,2.00146596706261,2.23480547213644,3.48935409640147,0,0.631719873426831,6.7908263331958,0.491467873003018,0,0.436882744260345,0.263766978228454,0.74259811776028,1.65698687863958,0,0.602694528023977,2.19093027116212,1.46379839637152,0.246242116153576,0.204000691244253,0.626909442956176,0,0.547497700291537,0.251085279189606,0.305653622991805,0.164201178899891,0.0787107813136792,0.393364276848904,0.383829398097213,0.77408061658038,0,0,0,0,0,0.293600439334847,2.21598163412751,1.80490002723128,0.434021741431704,3.80656306207871,2.26725566213286,1.54545340580512,4.36194716338694,6.04601509902095,5.82201746850759,1.39457422143411,2.46700732813095,0.929119112685311,1.1507695692886,2.0492856522328,0.47296445977717,0.344745680736619,1.29096936716765,1.35426486594342,3.01187743268168,1.91034305040492,1.79778787556068,0.918251677112708,0.962787081228281,1.27867425159808,3.29851300186716,4.78712778291916,5.54092175692502,0.290209238628584,0,0,0.502497330513487,1.0429658368404,1.95469960234605,1.81619850790011,0,1.26584954976354,2.11255286311942,2.12604299965044,2.72556239160889,2.2465726229299,3.90459921387916,1.92870704036496,2.28010194992999,2.38700012638908,3.47061892152804,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0.167186495390678,0,0,0,0,0,0,0,0,0.520237390239513,0,0.276350017785848,0,0,0,0,0.226618685395132,0,0,0,0,0,0,0.451725357233318,0.255973222308837,0,0,0,0,0,0,0,1.34140171940727,1.02290049474824,2.89151321907653,8.02140657017423,9.27017721349272,0.795285947051099,1.94653948121054,0.189069634328136,0.443458794925128,0.175669571386252,0.785874452986276,0,0.370784442784429,0.649094787309367,0.348259474598534,1.59549552622638,0,0,0.371457501329565,2.18638648103376,0.860234595106124,0,1.13061588384802,2.51699661725944,1.10047216776027,0.626984899610432,0,0.35576626268671,0.33472061276467,0.805658634218294,0,0.488124115096339,0.735326160691737,0.81014194788176,0.803697554556718,1.34717623575702,0.112611480483322,0,0,0.732806975721629,0,0,0,0.993943903390637,0.886413581652058,0.397227542439656,1.43418310374407,0.709336764396714,5.04609840128076,0,0,2.48968828319813,0.134710672069688,0.980771418680752,1.05950199351452,0.576175924479999,0.70296429550139,1.24864030732128,0.570471821544449,0.597794722207204,0.704606991862589,0.323745888736263,0.140450806702248,2.44985005505872,0.737005903870608,4.75298593408521,1.18800285728205,5.19260551484969,1.82032272387605,2.15585442544872,0.841680569770331,0,2.21651292387346,1.75591048352335,3.98434134538726,3.75595147266492,0.226864366320042,0.358779271377724,1.70845911054854,1.05965950579781,0.300091096084402,2.37020817248409,0,1.8611685633159,0.843881661206331,3.02054715999716,0.252433774244115,1.56484827691909,3.39456719319505,1.42003837006646,0.503760491138201,0.67824236924195,0.386521706326594,0,0,0,0,0,0,0,0,0,0.643240938192885,0,2.78620756819187,2.88751792667834,0.118306800039844,0.168584690078102,0,0.110293972732394,0,0,0,0.196221465125346,0.769494313892781,0,0,3.7041661019826,7.3504355692771,0,0,0,0,0,0.171567810298526,0,0,0,0,0.651616610620649,2.07986957055916,0,0.231860809950154,0,0.288732895522148,0.462985512576611,0,0,0,3.93947209739836,3.7440682422278,2.97262324577457,0,0,0,0,0.290633938513962,0.766765358330422,0,0.528290604079356,0,0,0,0.888970520090367,0,0,0,0.102827492703324,0,0.571652865261156,0.672786506072164,0.43596006883328,0.2933531432838,0.258543431515556,125.179756048159,0,1.32969058292435,0,0.257207374262142,0,0,0.428933980974443,5.42621605391443,0,1.62868092146868,0,0.791951872933429,1.80863626235752,0,0.299918973546171,3.64871341923571,4.52031382288914,2.10833939483032,2.15662369942424,9.18895486672911,4.27910715122155,1.44781306667579,1.02738161275192,0.537182889719687,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.24538298343828,0.500170521059677,0.271265023699736,4.99130067673937,0.535286966391485,0.630809660135739,2.6942525448324,0.601892199455438,4.5481500811197,2.0694614258501,1.32845119707087,0,1.73767228936166,1.17480694477644,3.0882908142977,0.620304078368662,2.37285620900479,0.426910231213777,0.303127571446259,0,0.604780586659361,0.992431231275107,0.61384789315225,0.841980283299221,0.768834895534206,1.02341449813341,1.28683136914886,2.96836132889982,1.3878872442239,2.30830242907065,1.72467027628999,2.59627214591811,1.27831416305955,0,0,0.0920809889358963,1.60740227430449,0.182091168006717,2.75361271414791,0,0,0,0,0,3.4120015221269,0.170093705276516,1.29549549661284,0,0.270946437543853,0.501689773854853,0,0,0,0,0,0,0,0,1.854738209659,0,0,0.574265537996172,0,0,5.60690166094307,0.462145851343933,0.614014698904518,0,1.39646318328756,1.16013355131383,1.27839941124151,3.02708921198907,0,0,0.127612712494584,0,3.253918845081,0.31481234683064,0,1.23213432070436,1.06461206063404,0.869932992075073,2.22389062924704,0.286249773483982,0,0.316379424718726,0.571890581771475,0.511795582622668,0.855877976067841,1.27281299170375,0,0.539617372749944,0.54907405947211,0.824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| ||
|short_description=p4@CALHM2 | |||
}} | }} |
Latest revision as of 03:35, 16 September 2015
Short description: | p4@CALHM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CALHM2_5end |
Coexpression cluster: | C193_Mesenchymal_Adipocyte_mature_Cardiac_heart_CD14CD16_CD14 |
Association with transcript: | -8bp_to_ENST00000474797_5end |
EntrezGene: | CALHM2 |
HGNC: | 23493 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.60e-21 | 48 |
phagocyte | 3.60e-21 | 48 |
macrophage dendritic cell progenitor | 5.93e-19 | 61 |
monopoietic cell | 5.96e-19 | 59 |
monocyte | 5.96e-19 | 59 |
monoblast | 5.96e-19 | 59 |
promonocyte | 5.96e-19 | 59 |
granulocyte monocyte progenitor cell | 4.71e-16 | 67 |
classical monocyte | 5.76e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.76e-16 | 42 |
myeloid lineage restricted progenitor cell | 1.50e-15 | 66 |
multi fate stem cell | 2.57e-15 | 427 |
somatic stem cell | 1.48e-14 | 433 |
connective tissue cell | 1.06e-13 | 361 |
stem cell | 1.40e-13 | 441 |
myeloid leukocyte | 3.34e-13 | 72 |
mesenchymal cell | 3.75e-13 | 354 |
motile cell | 4.46e-10 | 386 |
fibroblast | 8.77e-09 | 76 |
myeloid cell | 8.20e-08 | 108 |
common myeloid progenitor | 8.20e-08 | 108 |
macrophage | 1.60e-07 | 6 |
mesenchymal stem cell of adipose | 4.67e-07 | 8 |
intermediate monocyte | 5.50e-07 | 9 |
CD14-positive, CD16-positive monocyte | 5.50e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 4.27e-18 | 167 |
mesoderm | 6.97e-18 | 315 |
mesoderm-derived structure | 6.97e-18 | 315 |
presumptive mesoderm | 6.97e-18 | 315 |
skeletal system | 8.32e-16 | 100 |
bone marrow | 1.45e-15 | 76 |
lateral plate mesoderm | 2.90e-14 | 203 |
bone element | 2.91e-14 | 82 |
hematopoietic system | 4.79e-14 | 98 |
blood island | 4.79e-14 | 98 |
connective tissue | 1.62e-13 | 371 |
immune system | 4.05e-13 | 93 |
hemolymphoid system | 8.51e-13 | 108 |
skeletal element | 1.64e-12 | 90 |
adipose tissue | 6.58e-09 | 14 |