FFCP PHASE1:Hg19::chr17:48270002..48270030,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:48270002..48270030,+ | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_at_chr17:48270002..48270030,+ | |description=CAGE_peak_at_chr17:48270002..48270030,+ | ||
|id=chr17:48270002..48270030,+ | |id=chr17:48270002..48270030,+ | ||
|ontology_enrichment_celltype=CL:0000055!5.29e-36!180;CL:0000057!3.04e-27!75;CL:0000048!1.73e-18!430;CL:0000723!6.96e-18!436;CL:0000034!2.19e-17!444;CL:0000183!3.88e-14!59;CL:0002371!9.07e-13!591;CL:0000680!1.83e-12!57;CL:0000056!1.83e-12!57;CL:0000355!1.83e-12!57;CL:0000144!2.09e-12!625;CL:0000187!2.42e-12!54;CL:0002620!4.55e-11!23;CL:0000393!4.59e-11!60;CL:0000211!4.59e-11!60;CL:0002320!9.67e-11!365;CL:0002334!6.70e-10!12;CL:0000134!2.72e-09!358;CL:0000192!7.90e-09!42;CL:0000514!7.90e-09!42;CL:0000219!1.54e-07!390;CL:0002570!1.83e-07!8;CL:0000548!2.45e-07!679;CL:0000004!2.45e-07!679;CL:0000255!2.45e-07!679;CL:0002494!4.38e-07!16;CL:0000012!4.73e-07!682;CL:0000630!6.88e-07!9;CL:0000499!9.81e-07!27 | |ontology_enrichment_celltype=CL:0000055!5.29e-36!180;CL:0000057!3.04e-27!75;CL:0000048!1.73e-18!430;CL:0000723!6.96e-18!436;CL:0000034!2.19e-17!444;CL:0000183!3.88e-14!59;CL:0002371!9.07e-13!591;CL:0000680!1.83e-12!57;CL:0000056!1.83e-12!57;CL:0000355!1.83e-12!57;CL:0000144!2.09e-12!625;CL:0000187!2.42e-12!54;CL:0002620!4.55e-11!23;CL:0000393!4.59e-11!60;CL:0000211!4.59e-11!60;CL:0002320!9.67e-11!365;CL:0002334!6.70e-10!12;CL:0000134!2.72e-09!358;CL:0000192!7.90e-09!42;CL:0000514!7.90e-09!42;CL:0000219!1.54e-07!390;CL:0002570!1.83e-07!8;CL:0000548!2.45e-07!679;CL:0000004!2.45e-07!679;CL:0000255!2.45e-07!679;CL:0002494!4.38e-07!16;CL:0000012!4.73e-07!682;CL:0000630!6.88e-07!9;CL:0000499!9.81e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0000134;8.46e-11;55!CL:0000057;8.88e-11;73!CL:0002620;1.03e-10;23!CL:0002334;1.60e-10;12!CL:0002570;2.82e-10;8!CL:0000048;5.64e-10;58!CL:0002569;4.25e-09;6!CL:0002320;9.62e-09;188!CL:0000723;1.09e-08;61!CL:0000349;3.20e-08;19!CL:0000499;5.97e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.37e-27,76;CL:0000048,4.98e-18,427;CL:0000723,2.46e-17,433;CL:0000034,1.92e-16,441;CL:0002320,8.61e-15,361;CL:0000134,2.76e-14,354;CL:0000219,2.57e-12,386;CL:0002620,8.74e-11,23;CL:0002334,1.41e-10,12;CL:0002570,1.71e-10,8;CL:0002569,3.81e-09,6;CL:0000349,3.69e-08,19;CL:0000136,8.05e-08,15;CL:0000499,5.46e-07,28 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;1.02e-07;5!DOID:450;1.02e-07;5!DOID:66;1.02e-07;5!DOID:423;1.02e-07;5!DOID:0080000;1.02e-07;5!DOID:11722;1.02e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.24e-07,5;DOID:450,1.24e-07,5;DOID:66,1.24e-07,5;DOID:423,1.24e-07,5;DOID:0080000,1.24e-07,5;DOID:11722,1.24e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.43e-14!83;UBERON:0002329!2.43e-14!83;UBERON:0003077!2.43e-14!83;UBERON:0003059!2.43e-14!83;UBERON:0007282!2.43e-14!83;UBERON:0009618!2.43e-14!83;UBERON:0007285!2.43e-14!83;UBERON:0004290!7.63e-13!70;UBERON:0001134!7.56e-12!61;UBERON:0002036!7.56e-12!61;UBERON:0003082!7.56e-12!61;UBERON:0002385!4.62e-11!63;UBERON:0001015!4.62e-11!63;UBERON:0000383!4.62e-11!63;UBERON:0002384!1.27e-10!375;UBERON:0000486!1.98e-10!82;UBERON:0002199!4.72e-10!45;UBERON:0002416!4.72e-10!45;UBERON:0001013!1.52e-09!14;UBERON:0005256!2.10e-09!143;UBERON:0003102!8.50e-09!95;UBERON:0002097!8.89e-08!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;2.46e-12;14!UBERON:0003104;1.45e-10;7!UBERON:0009142;1.45e-10;7!UBERON:0004457;6.48e-10;9!UBERON:0000042;6.48e-10;9!UBERON:0002384;1.48e-09;198!UBERON:0003422;4.25e-09;6!UBERON:0003688;4.54e-09;6!UBERON:0002358;4.54e-09;6!UBERON:0003684;4.54e-09;6!UBERON:0001178;4.54e-09;6!UBERON:0000478;2.99e-07;24!UBERON:0002199;4.62e-07;46!UBERON:0002416;4.62e-07;46!UBERON:0002331;5.53e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.41e-14,371;UBERON:0001013,1.99e-12,14;UBERON:0003422,3.81e-09,6;UBERON:0003688,4.28e-09,6;UBERON:0002358,4.28e-09,6;UBERON:0003684,4.28e-09,6;UBERON:0001178,4.28e-09,6;UBERON:0002199,4.90e-09,46;UBERON:0002416,4.90e-09,46;UBERON:0003102,8.18e-08,99;UBERON:0002097,1.27e-07,41;UBERON:0000478,3.37e-07,24;UBERON:0002331,5.17e-07,10;UBERON:0000358,5.17e-07,10;UBERON:0000307,5.17e-07,10;UBERON:0000091,5.17e-07,10;UBERON:0000087,5.17e-07,10;UBERON:0007010,5.17e-07,10;UBERON:0007806,5.17e-07,10;UBERON:0008780,5.17e-07,10;UBERON:0005728,5.17e-07,10;UBERON:0004457,6.10e-07,12;UBERON:0000042,6.10e-07,12 | |||
|phase1_expression=2.54349730978779,1.07050261945492,2.53717927372748,7.00513088471913,8.93922188854576,4.36169262050184,5.06599756336621,1.26343974685366,0.261185628199839,0,0,0.655324116390517,1.31883489114227,0.37129905888014,0.662794751455832,2.01697543935533,0,0,0,0.492484232307152,2.65200898617529,1.56727360739044,0,0,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,2.9408389224012,11.2046137239216,1.50401373190767,2.75208386025565,0,1.45990461090791,0,1.33037638477538,0.966182642624386,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,9.44246708221105,1.77282716330412,1.45650098894541,13.7681577959431,1.41867352879343,1.12135520028461,2.1349799145941,5.18001851676036,0,0.404132016209064,0.817309515567294,1.36221684880438,0,0.234321431833797,0.312160076830321,0,1.34503812496621,0.117434498643765,0.161872944368132,0,0,0.491337269247072,0.206651562351531,5.94001428641027,7.66527480763526,0,1.43723628363248,0.168336113954066,0.125118519871964,0,2.63386572528503,4.29082914118628,3.15499923703853,0.680593098960126,4.48474089222155,5.55249210928275,3.81477422087211,9.60291507470087,1.13357782162283,6.69865404118636,4.09457083929498,3.88185564154912,2.24105111870757,5.80597680761463,1.93304787148829,1.93975268182574,7.81021103536552,0.906768884048762,2.37384829234683,0,0,0,0.121973706129595,0,0,0.207322110030741,0,0,1.56449532329816,4.5026865673502,0,0.464367928031979,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,4.9388881359768,8.82052268313252,0,0,0.590789906681404,0,0,1.02940686179115,0.109750285408626,0,0,0,0,3.11980435583874,0,0.115930404975077,1.05667824812239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0.5867062865676,2.45616259939778,7.15312891703765,1.690605505112,3.45719551560332,2.08014873822732,1.02882949704857,1.41849132023278,0.532844358032199,2.7165818795048,15.7360265563518,1.64648067356154,1.95441710576241,1.77695974371273,3.16780749173372,0.602878754119172,0,0.099972991182057,0,0,0,6.70949595376431,11.4861935834114,0,0,0.61642896765115,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.981531933753119,0,0.271265023699736,9.35868876888632,7.31558854068363,6.93890626149313,1.87426263988341,1.80567659836631,0,2.0694614258501,4.64957918974806,1.10621501125022,0.695068915744663,4.11182430671755,6.86286847621712,0,0,0,0,1.66435439510497,3.32629322662648,3.2254015016441,5.21770709179412,8.13914273855913,4.35673107469383,1.53512174720011,7.23842645146234,4.45254199334973,0.925258162815933,3.72879623157567,1.14978018419333,0.519254429183621,1.97557643381931,0,0,0,1.37777337797528,1.63882051206045,0.917870904715969,0,0,0,0,0,0,0,0,0,0.812839312631559,2.00675909541941,0,0,0.223874754722178,0,0,0,0,0,0,0.366277859273374,0.165018999841176,0,0,4.82051789532479,0.773365746336976,0.770243085573222,0.767518373630648,0.827019434907183,0.966782203814463,0.870100163485371,0.596586391912706,7.03353081609225,0,0,0,0,0.929691098594572,11.9628691795643,0.6970372701606,1.23213432070436,0,0,0.55597265731176,0,0.744316738719335,0.632758849437452,1.90630193923825,1.79128453917934,0.42793898803392,0,3.13979456079692,1.07923474549989,1.92175920815238,0.235624804691373,0.202182481573316,1.58510321173008,1.26377536871694,1.46290121726877,0.487426979262569,0,2.72999822815972,4.52497382251881,2.26016233240486,0.551365343546124,0,0.438450885253763,0,1.31178950409327,0.202910376962704,0.30982349809975,0.281695602532241,2.00775893085672,3.04572027140676,0,0,2.11107635297664,4.28083360847872,1.51789269506286,0.699869440489966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,2.48831670129446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0.227884111694002,0,0,0,0,1.19076871422421,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,2.48578814858586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.859530882839914,0,0.279282401272254,0,0,0,0,0,0.53746777989381,2.88239906833923,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0.209818352539992,0,0,0,0,0,0.25426853765475,0.542999601753713,0,0,0,0,0.511164065356265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,2.53733164907686,2.80455971816669,2.21922344601045,0.189403005275089,1.76097531226803,0,0.228840068396924,2.41969478021182,3.41961841282117,0.295710299979268,0.477890301491107,0.899606224327209,1.39736661188633,1.65882483136342,2.12673371646396,0.521745061811734,5.55953153289708,0.761610424337591,0.406870733204662,0.181848659202559,1.8259794697223,0,1.19428766609585,0.400027764663154,4.12074846219351,3.03074539889327,0,0,0.428883182749851,0,0,0.69456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| ||
|short_description=p@chr17:48270002..48270030,+ | |short_description=p@chr17:48270002..48270030,+ | ||
}} | }} |
Latest revision as of 18:35, 25 July 2015
Short description: | p@chr17:48270002..48270030, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:48270002..48270030, + |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.37e-27 | 76 |
multi fate stem cell | 4.98e-18 | 427 |
somatic stem cell | 2.46e-17 | 433 |
stem cell | 1.92e-16 | 441 |
connective tissue cell | 8.61e-15 | 361 |
mesenchymal cell | 2.76e-14 | 354 |
motile cell | 2.57e-12 | 386 |
skin fibroblast | 8.74e-11 | 23 |
preadipocyte | 1.41e-10 | 12 |
mesenchymal stem cell of adipose | 1.71e-10 | 8 |
mesenchymal stem cell of umbilical cord | 3.81e-09 | 6 |
extraembryonic cell | 3.69e-08 | 19 |
fat cell | 8.05e-08 | 15 |
stromal cell | 5.46e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.41e-14 | 371 |
adipose tissue | 1.99e-12 | 14 |
mesenchyme of umbilical cord | 3.81e-09 | 6 |
omentum | 4.28e-09 | 6 |
peritoneum | 4.28e-09 | 6 |
abdominal cavity | 4.28e-09 | 6 |
visceral peritoneum | 4.28e-09 | 6 |
integument | 4.90e-09 | 46 |
integumental system | 4.90e-09 | 46 |
surface structure | 8.18e-08 | 99 |
skin of body | 1.27e-07 | 41 |
extraembryonic structure | 3.37e-07 | 24 |
umbilical cord | 5.17e-07 | 10 |
blastocyst | 5.17e-07 | 10 |
blastula | 5.17e-07 | 10 |
bilaminar disc | 5.17e-07 | 10 |
inner cell mass | 5.17e-07 | 10 |
cleaving embryo | 5.17e-07 | 10 |
connecting stalk | 5.17e-07 | 10 |
inner cell mass derived epiblast | 5.17e-07 | 10 |
extraembryonic mesoderm | 5.17e-07 | 10 |
cavity lining | 6.10e-07 | 12 |
serous membrane | 6.10e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.24e-07 | 5 |
myotonic disease | 1.24e-07 | 5 |
muscle tissue disease | 1.24e-07 | 5 |
myopathy | 1.24e-07 | 5 |
muscular disease | 1.24e-07 | 5 |
myotonic dystrophy | 1.24e-07 | 5 |