FFCP PHASE1:Hg19::chr2:238707408..238707430,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=375316 | |EntrezGene=375316 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24756 | |HGNC=24756 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=13bp_to_ENST00000444524_5end | |association_with_transcript=13bp_to_ENST00000444524_5end | ||
|cluster_id=chr2:238707408..238707430,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_RBM44_5end | |description=CAGE_peak_1_at_RBM44_5end | ||
|id=chr2:238707408..238707430,+ | |id=chr2:238707408..238707430,+ | ||
|ontology_enrichment_celltype=CL:0002057!6.01e-12!42;CL:0000860!6.25e-11!45;CL:0000839!2.47e-10!70;CL:0000557!3.46e-10!71;CL:0000766!3.10e-09!76;CL:0002009!8.17e-09!65;CL:0000763!2.39e-08!112;CL:0000049!2.39e-08!112;CL:0002194!6.57e-08!63;CL:0000576!6.57e-08!63;CL:0000040!6.57e-08!63;CL:0000559!6.57e-08!63 | |ontology_enrichment_celltype=CL:0002057!6.01e-12!42;CL:0000860!6.25e-11!45;CL:0000839!2.47e-10!70;CL:0000557!3.46e-10!71;CL:0000766!3.10e-09!76;CL:0002009!8.17e-09!65;CL:0000763!2.39e-08!112;CL:0000049!2.39e-08!112;CL:0002194!6.57e-08!63;CL:0000576!6.57e-08!63;CL:0000040!6.57e-08!63;CL:0000559!6.57e-08!63 | ||
|ontology_enrichment_celltype_v019=CL:0000039;2.35e-08;7!CL:0000586;2.35e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.35e-08,7;CL:0000586,2.35e-08,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.85e-45;10!UBERON:0005564;4.85e-45;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.40e-08!80;UBERON:0001474!1.06e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;5.52e-56;8!UBERON:0003135;4.67e-41;11!UBERON:0000991;4.76e-22;21!UBERON:0003101;4.27e-21;22!UBERON:0000079;4.27e-21;22!UBERON:0002323;8.09e-08;45!UBERON:0003133;5.11e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,5.52e-56,8;UBERON:0003135,4.67e-41,11;UBERON:0000991,4.76e-22,21;UBERON:0009196,4.76e-22,21;UBERON:0009117,4.76e-22,21;UBERON:0005564,4.76e-22,21;UBERON:0004176,4.27e-21,22;UBERON:0003101,4.27e-21,22;UBERON:0000079,4.27e-21,22;UBERON:0002323,1.35e-10,46;UBERON:0003133,3.42e-10,48;UBERON:0004458,5.30e-10,49;UBERON:0003886,3.71e-09,54;UBERON:0005156,1.88e-08,59;UBERON:0000990,1.88e-08,59;UBERON:0002553,3.34e-08,61 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0.32389366601898,0,0,0,0,0.232429036905685,0,0,0,0,0.47296445977717,0,0,0,0.376484679085209,0.272906150057846,0.224723484445085,0,0,0,0.659702600373432,0,0.426224750532694,0,0,0,0,0,0.217188844705117,0,0.368277635987565,0.316462387440884,0.211255286311942,0,0,0.22465726229299,0.300353785683013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0.294605907474837,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.91171533116422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323292113637624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0.144119953416961,0,0.063497894292169,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196498082026242,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0.296964680832639,0,0.994147647766298,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449947783103001,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0.129282956361551,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0.0852134047591577,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0.143339583151451,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,1.75495277504663,18.1111088741592,26.2604847553055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0.813792356631477,0,0,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0.32389366601898,0,0,0,0,0.232429036905685,0,0,0,0,0.47296445977717,0,0,0,0.376484679085209,0.272906150057846,0.224723484445085,0,0,0,0.659702600373432,0,0.426224750532694,0,0,0,0,0,0.217188844705117,0,0.368277635987565,0.316462387440884,0.211255286311942,0,0,0.22465726229299,0.300353785683013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0.294605907474837,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.91171533116422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323292113637624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0.144119953416961,0,0.063497894292169,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196498082026242,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0.296964680832639,0,0.994147647766298,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449947783103001,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0.129282956361551,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0.0852134047591577,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0.143339583151451,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,1.75495277504663,18.1111088741592,26.2604847553055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0.813792356631477,0,0,0 | ||
|short_description=p1@RBM44 | |short_description=p1@RBM44 | ||
}} | }} |
Latest revision as of 05:04, 16 September 2015
Short description: | p1@RBM44 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RBM44_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 13bp_to_ENST00000444524_5end |
EntrezGene: | RBM44 |
HGNC: | 24756 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.35e-08 | 7 |
germ cell | 2.35e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 5.52e-56 | 8 |
male reproductive organ | 4.67e-41 | 11 |
gonad | 4.76e-22 | 21 |
indifferent external genitalia | 4.76e-22 | 21 |
indifferent gonad | 4.76e-22 | 21 |
gonad primordium | 4.76e-22 | 21 |
external genitalia | 4.27e-21 | 22 |
male organism | 4.27e-21 | 22 |
male reproductive system | 4.27e-21 | 22 |
body cavity | 1.35e-10 | 46 |
reproductive organ | 3.42e-10 | 48 |
body cavity or lining | 5.30e-10 | 49 |
body cavity precursor | 3.71e-09 | 54 |
reproductive structure | 1.88e-08 | 59 |
reproductive system | 1.88e-08 | 59 |
anatomical cavity | 3.34e-08 | 61 |