FFCP PHASE1:Hg19::chr12:121972556..121972571,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:121972556..121972571,-
|short_description=p3@KDM2B
|description=CAGE_peak_3_at_KDM2B_5end
|association_with_transcript=0bp_to_ENST00000545022_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=84678 | |EntrezGene=84678 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13610 | |HGNC=13610 | ||
|TSSclassifier=strong | |||
|UniProt=F5H6N6 | |UniProt=F5H6N6 | ||
|association_with_transcript=0bp_to_ENST00000545022_5end | |||
|cluster_id=chr12:121972556..121972571,- | |||
|coexpression_cluster_id=C61 | |||
|description=CAGE_peak_3_at_KDM2B_5end | |||
|id=chr12:121972556..121972571,- | |||
|ontology_enrichment_celltype=CL:0000738!9.25e-47!140;CL:0002087!2.21e-37!119;CL:0002031!2.03e-36!124;CL:0000988!9.10e-36!182;CL:0000037!3.18e-35!172;CL:0000566!3.18e-35!172;CL:0002032!4.51e-33!165;CL:0000837!4.51e-33!165;CL:0000542!6.55e-33!53;CL:0000051!6.55e-33!53;CL:0000838!1.33e-31!52;CL:0000945!2.49e-19!24;CL:0000826!2.49e-19!24;CL:0000990!9.94e-14!8;CL:0000451!4.74e-13!10;CL:0000084!1.56e-10!25;CL:0000827!1.56e-10!25;CL:0000766!3.71e-10!76;CL:0000557!7.96e-10!71;CL:0000236!2.51e-09!14;CL:0000840!3.23e-09!5;CL:0001029!3.23e-09!5;CL:0000453!4.28e-09!5;CL:0002009!6.66e-09!65;CL:0000080!6.74e-09!6;CL:0000791!6.84e-09!18;CL:0000789!6.84e-09!18;CL:0002420!6.84e-09!18;CL:0002419!6.84e-09!18;CL:0000790!6.84e-09!18;CL:0000763!1.95e-08!112;CL:0000049!1.95e-08!112;CL:0000839!3.55e-08!70;CL:0002194!1.66e-07!63;CL:0000576!1.66e-07!63;CL:0000040!1.66e-07!63;CL:0000559!1.66e-07!63 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.66e-29;24!CL:0000990;1.02e-19;8!CL:0000542;2.50e-19;53!CL:0000451;7.77e-16;10!CL:0000453;2.64e-15;5!CL:0000236;6.44e-12;13!CL:0000840;1.06e-11;5!CL:0002087;6.22e-11;104!CL:0000623;4.31e-09;3!CL:0000738;1.42e-08;136!CL:0000988;9.75e-08;177!CL:0000767;1.02e-07;3!CL:0001014;5.39e-07;2!CL:0001016;5.39e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.79e-42,136;CL:0000542,1.78e-36,53;CL:0000051,1.78e-36,53;CL:0000838,1.96e-34,52;CL:0000988,4.10e-34,177;CL:0002087,1.19e-31,115;CL:0000037,1.22e-31,168;CL:0002032,1.34e-30,161;CL:0000837,1.34e-30,161;CL:0002031,5.59e-30,120;CL:0000945,1.41e-29,24;CL:0000826,1.41e-29,24;CL:0000990,9.14e-20,8;CL:0000451,7.13e-16,10;CL:0000453,2.69e-15,5;CL:0000236,4.60e-14,14;CL:0000840,9.62e-12,5;CL:0001029,9.62e-12,5;CL:0000623,4.26e-09,3;CL:0000825,4.26e-09,3;CL:0000134,3.58e-08,354;CL:0000767,7.30e-08,3;CL:0002320,8.83e-08,361;CL:0001014,5.48e-07,2;CL:0001016,5.48e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000051;2.50e-19;53 | |||
|ontology_enrichment_disease=DOID:0060058!3.97e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;7.57e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,7.48e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0002390!8.45e-15!102;UBERON:0003061!8.45e-15!102;UBERON:0002193!4.24e-14!112;UBERON:0002371!8.16e-08!80;UBERON:0004177!1.68e-07!7;UBERON:0002405!1.93e-07!115;UBERON:0001474!9.71e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0004177;2.88e-13;5!UBERON:0005057;2.88e-13;5!UBERON:0002106;1.38e-08;3!UBERON:0002390;2.22e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.74e-11,108;UBERON:0002390,8.46e-11,98;UBERON:0003061,8.46e-11,98;UBERON:0004177,2.46e-09,7;UBERON:0005057,2.46e-09,7;UBERON:0002106,1.49e-08,3;UBERON:0004854,1.49e-08,3;UBERON:0009034,1.49e-08,3;UBERON:0002095,1.49e-08,3;UBERON:0004782,1.49e-08,3;UBERON:0003281,1.49e-08,3;UBERON:0009664,1.49e-08,3;UBERON:0002296,1.49e-08,3;UBERON:0005602,1.49e-08,3;UBERON:0001179,1.49e-08,3;UBERON:0006293,1.49e-08,3;UBERON:0002405,1.36e-07,93;UBERON:0002384,3.01e-07,371 | |||
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| ||
|short_description=p3@KDM2B | |||
}} | }} |
Latest revision as of 22:03, 16 September 2015
Short description: | p3@KDM2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_KDM2B_5end |
Coexpression cluster: | C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b |
Association with transcript: | 0bp_to_ENST00000545022_5end |
EntrezGene: | KDM2B |
HGNC: | 13610 |
UniProt: | F5H6N6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.79e-42 | 136 |
lymphocyte | 1.78e-36 | 53 |
common lymphoid progenitor | 1.78e-36 | 53 |
lymphoid lineage restricted progenitor cell | 1.96e-34 | 52 |
hematopoietic cell | 4.10e-34 | 177 |
nongranular leukocyte | 1.19e-31 | 115 |
hematopoietic stem cell | 1.22e-31 | 168 |
hematopoietic oligopotent progenitor cell | 1.34e-30 | 161 |
hematopoietic multipotent progenitor cell | 1.34e-30 | 161 |
hematopoietic lineage restricted progenitor cell | 5.59e-30 | 120 |
lymphocyte of B lineage | 1.41e-29 | 24 |
pro-B cell | 1.41e-29 | 24 |
conventional dendritic cell | 9.14e-20 | 8 |
dendritic cell | 7.13e-16 | 10 |
Langerhans cell | 2.69e-15 | 5 |
B cell | 4.60e-14 | 14 |
immature conventional dendritic cell | 9.62e-12 | 5 |
common dendritic progenitor | 9.62e-12 | 5 |
natural killer cell | 4.26e-09 | 3 |
pro-NK cell | 4.26e-09 | 3 |
mesenchymal cell | 3.58e-08 | 354 |
basophil | 7.30e-08 | 3 |
connective tissue cell | 8.83e-08 | 361 |
CD1a-positive Langerhans cell | 5.48e-07 | 2 |
immature CD1a-positive Langerhans cell | 5.48e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 3.74e-11 | 108 |
hematopoietic system | 8.46e-11 | 98 |
blood island | 8.46e-11 | 98 |
hemopoietic organ | 2.46e-09 | 7 |
immune organ | 2.46e-09 | 7 |
spleen | 1.49e-08 | 3 |
gastrointestinal system mesentery | 1.49e-08 | 3 |
stomach region | 1.49e-08 | 3 |
mesentery | 1.49e-08 | 3 |
gastrointestinal system serosa | 1.49e-08 | 3 |
mesentery of stomach | 1.49e-08 | 3 |
gut mesentery | 1.49e-08 | 3 |
dorsal mesentery | 1.49e-08 | 3 |
dorsal mesogastrium | 1.49e-08 | 3 |
peritoneal cavity | 1.49e-08 | 3 |
spleen primordium | 1.49e-08 | 3 |
immune system | 1.36e-07 | 93 |
connective tissue | 3.01e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 7.48e-07 | 10 |