FFCP PHASE1:Hg19::chr5:150632762..150632784,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2760 | |EntrezGene=2760 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4367 | |HGNC=4367 | ||
|TSSclassifier=strong | |||
|UniProt=P17900 | |UniProt=P17900 | ||
|association_with_transcript=149bp_to_NM_000405,NM_001167607,uc003ltr.3,uc011dcr.1,uc011dcs.1_5end | |association_with_transcript=149bp_to_NM_000405,NM_001167607,uc003ltr.3,uc011dcr.1,uc011dcs.1_5end | ||
|cluster_id=chr5:150632762..150632784,+ | |||
|description=CAGE_peak_2_at_GM2A_5end | |description=CAGE_peak_2_at_GM2A_5end | ||
|id=chr5:150632762..150632784,+ | |id=chr5:150632762..150632784,+ | ||
|ontology_enrichment_celltype=CL:0002371!2.99e-33!591;CL:0000144!4.04e-30!625;CL:0000548!7.90e-25!679;CL:0000004!7.90e-25!679;CL:0000255!7.90e-25!679;CL:0000012!1.21e-24!682;CL:0000063!1.29e-17!578;CL:0000003!3.85e-17!722;CL:0000557!2.95e-16!71;CL:0000839!5.55e-16!70;CL:0002194!7.87e-15!63;CL:0000576!7.87e-15!63;CL:0000040!7.87e-15!63;CL:0000559!7.87e-15!63;CL:0000766!1.06e-14!76;CL:0002009!2.33e-14!65;CL:0002057!2.16e-11!42;CL:0000860!2.84e-09!45;CL:0000034!3.31e-09!444;CL:0000723!7.60e-09!436;CL:0000763!1.81e-08!112;CL:0000049!1.81e-08!112;CL:0000048!2.15e-08!430;CL:0002077!5.47e-07!33;CL:0002320!6.15e-07!365 | |ontology_enrichment_celltype=CL:0002371!2.99e-33!591;CL:0000144!4.04e-30!625;CL:0000548!7.90e-25!679;CL:0000004!7.90e-25!679;CL:0000255!7.90e-25!679;CL:0000012!1.21e-24!682;CL:0000063!1.29e-17!578;CL:0000003!3.85e-17!722;CL:0000557!2.95e-16!71;CL:0000839!5.55e-16!70;CL:0002194!7.87e-15!63;CL:0000576!7.87e-15!63;CL:0000040!7.87e-15!63;CL:0000559!7.87e-15!63;CL:0000766!1.06e-14!76;CL:0002009!2.33e-14!65;CL:0002057!2.16e-11!42;CL:0000860!2.84e-09!45;CL:0000034!3.31e-09!444;CL:0000723!7.60e-09!436;CL:0000763!1.81e-08!112;CL:0000049!1.81e-08!112;CL:0000048!2.15e-08!430;CL:0002077!5.47e-07!33;CL:0002320!6.15e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0000473;4.86e-14;39!CL:0000234;4.86e-14;39!CL:0000860;3.67e-13;33!CL:0002057;3.67e-13;33!CL:0000576;3.18e-09;48!CL:0000766;7.31e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,3.66e-19,67;CL:0000839,6.97e-19,66;CL:0002194,8.55e-18,59;CL:0000576,8.55e-18,59;CL:0000040,8.55e-18,59;CL:0000559,8.55e-18,59;CL:0000766,2.72e-17,72;CL:0002009,3.39e-17,61;CL:0000473,1.05e-14,48;CL:0000234,1.05e-14,48;CL:0000860,2.16e-11,42;CL:0002057,2.16e-11,42;CL:0000763,7.19e-10,108;CL:0000049,7.19e-10,108;CL:0000034,7.75e-10,441;CL:0000723,1.83e-09,433;CL:0000048,5.35e-09,427;CL:0002077,1.83e-07,34;CL:0002320,2.57e-07,361;CL:0002321,7.77e-07,250 | |||
|ontology_enrichment_development_v019=CL:0002057;7.46e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.66e-17!80;UBERON:0002405!9.30e-16!115;UBERON:0001474!8.27e-15!86;UBERON:0004765!1.32e-14!101;UBERON:0001434!1.32e-14!101;UBERON:0002204!3.83e-14!167;UBERON:0002193!1.18e-12!112;UBERON:0003081!2.36e-12!216;UBERON:0002390!2.12e-10!102;UBERON:0003061!2.12e-10!102;UBERON:0000926!5.15e-10!448;UBERON:0004120!5.15e-10!448;UBERON:0006603!5.15e-10!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,3.16e-20,93;UBERON:0002371,7.93e-20,76;UBERON:0004765,1.03e-19,90;UBERON:0001434,1.57e-17,100;UBERON:0001474,3.30e-17,82;UBERON:0002204,1.03e-16,167;UBERON:0002193,1.76e-14,108;UBERON:0000926,4.65e-13,315;UBERON:0004120,4.65e-13,315;UBERON:0006603,4.65e-13,315;UBERON:0002390,4.23e-12,98;UBERON:0003061,4.23e-12,98;UBERON:0003081,5.96e-12,203 | |||
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| ||
|short_description=p2@GM2A | |short_description=p2@GM2A | ||
}} | }} |
Latest revision as of 08:37, 16 September 2015
Short description: | p2@GM2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GM2A_5end |
Coexpression cluster: | NA |
Association with transcript: | 149bp_to_NM_000405, NM_001167607, uc003ltr.3, uc011dcr.1, uc011dcs.1_5end |
EntrezGene: | GM2A |
HGNC: | 4367 |
UniProt: | P17900 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 3.66e-19 | 67 |
myeloid lineage restricted progenitor cell | 6.97e-19 | 66 |
monopoietic cell | 8.55e-18 | 59 |
monocyte | 8.55e-18 | 59 |
monoblast | 8.55e-18 | 59 |
promonocyte | 8.55e-18 | 59 |
myeloid leukocyte | 2.72e-17 | 72 |
macrophage dendritic cell progenitor | 3.39e-17 | 61 |
defensive cell | 1.05e-14 | 48 |
phagocyte | 1.05e-14 | 48 |
classical monocyte | 2.16e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.16e-11 | 42 |
myeloid cell | 7.19e-10 | 108 |
common myeloid progenitor | 7.19e-10 | 108 |
stem cell | 7.75e-10 | 441 |
somatic stem cell | 1.83e-09 | 433 |
multi fate stem cell | 5.35e-09 | 427 |
ecto-epithelial cell | 1.83e-07 | 34 |
connective tissue cell | 2.57e-07 | 361 |
embryonic cell | 7.77e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
immune system | 3.16e-20 | 93 |
bone marrow | 7.93e-20 | 76 |
skeletal element | 1.03e-19 | 90 |
skeletal system | 1.57e-17 | 100 |
bone element | 3.30e-17 | 82 |
musculoskeletal system | 1.03e-16 | 167 |
hemolymphoid system | 1.76e-14 | 108 |
mesoderm | 4.65e-13 | 315 |
mesoderm-derived structure | 4.65e-13 | 315 |
presumptive mesoderm | 4.65e-13 | 315 |
hematopoietic system | 4.23e-12 | 98 |
blood island | 4.23e-12 | 98 |
lateral plate mesoderm | 5.96e-12 | 203 |