FFCP PHASE1:Hg19::chr2:55252842..55252854,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57142 | |EntrezGene=57142 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=14085 | |HGNC=14085 | ||
|TSSclassifier=strong | |||
|UniProt=Q3LIF4 | |UniProt=Q3LIF4 | ||
|association_with_transcript=349bp_to_AB073351_5end | |association_with_transcript=349bp_to_AB073351_5end | ||
|cluster_id=chr2:55252842..55252854,- | |||
|coexpression_cluster_id=C317 | |||
|description=CAGE_peak_37_at_RTN4_5end | |description=CAGE_peak_37_at_RTN4_5end | ||
|id=chr2:55252842..55252854,- | |id=chr2:55252842..55252854,- | ||
|ontology_enrichment_celltype=CL:0000540!1.74e-07!6;CL:0000031!1.74e-07!6;CL:0000404!1.74e-07!6 | |ontology_enrichment_celltype=CL:0000540!1.74e-07!6;CL:0000031!1.74e-07!6;CL:0000404!1.74e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000775;3.89e-23;3!CL:0000094;2.71e-09;8!CL:0000081;5.39e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000775,3.29e-23,3;CL:0000094,2.55e-09,8;CL:0000081,5.15e-07,11 | |||
|ontology_enrichment_development_v019=UBERON:0006215;8.62e-07;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.26e-32!82;UBERON:0005743!9.94e-32!86;UBERON:0001049!1.70e-31!57;UBERON:0005068!1.70e-31!57;UBERON:0006241!1.70e-31!57;UBERON:0007135!1.70e-31!57;UBERON:0000073!3.66e-31!94;UBERON:0001016!3.66e-31!94;UBERON:0000955!2.33e-26!69;UBERON:0006238!2.33e-26!69;UBERON:0002616!2.63e-26!59;UBERON:0002780!2.55e-25!41;UBERON:0001890!2.55e-25!41;UBERON:0006240!2.55e-25!41;UBERON:0003080!1.67e-24!42;UBERON:0003075!1.42e-23!86;UBERON:0007284!1.42e-23!86;UBERON:0002346!4.52e-23!90;UBERON:0002020!5.26e-23!34;UBERON:0003528!5.26e-23!34;UBERON:0001893!1.03e-22!34;UBERON:0002791!1.83e-21!33;UBERON:0001869!3.85e-20!32;UBERON:0003056!4.85e-20!61;UBERON:0007023!8.09e-18!115;UBERON:0000956!6.27e-16!25;UBERON:0000203!6.27e-16!25;UBERON:0000033!4.97e-15!123;UBERON:0004121!6.93e-15!169;UBERON:0000924!7.21e-15!173;UBERON:0006601!7.21e-15!173;UBERON:0002619!1.15e-14!22;UBERON:0001950!2.96e-14!20;UBERON:0000153!1.01e-13!129;UBERON:0007811!1.01e-13!129;UBERON:0001871!4.87e-10!7;UBERON:0002308!1.16e-08!9;UBERON:0000125!1.16e-08!9;UBERON:0002420!1.24e-08!9;UBERON:0007245!1.24e-08!9;UBERON:0010009!1.24e-08!9;UBERON:0010011!1.24e-08!9;UBERON:0000454!1.24e-08!9;UBERON:0003076!4.03e-08!15;UBERON:0003057!4.03e-08!15;UBERON:0002298!6.73e-08!8;UBERON:0000200!6.72e-07!6 | |ontology_enrichment_uberon=UBERON:0001017!1.26e-32!82;UBERON:0005743!9.94e-32!86;UBERON:0001049!1.70e-31!57;UBERON:0005068!1.70e-31!57;UBERON:0006241!1.70e-31!57;UBERON:0007135!1.70e-31!57;UBERON:0000073!3.66e-31!94;UBERON:0001016!3.66e-31!94;UBERON:0000955!2.33e-26!69;UBERON:0006238!2.33e-26!69;UBERON:0002616!2.63e-26!59;UBERON:0002780!2.55e-25!41;UBERON:0001890!2.55e-25!41;UBERON:0006240!2.55e-25!41;UBERON:0003080!1.67e-24!42;UBERON:0003075!1.42e-23!86;UBERON:0007284!1.42e-23!86;UBERON:0002346!4.52e-23!90;UBERON:0002020!5.26e-23!34;UBERON:0003528!5.26e-23!34;UBERON:0001893!1.03e-22!34;UBERON:0002791!1.83e-21!33;UBERON:0001869!3.85e-20!32;UBERON:0003056!4.85e-20!61;UBERON:0007023!8.09e-18!115;UBERON:0000956!6.27e-16!25;UBERON:0000203!6.27e-16!25;UBERON:0000033!4.97e-15!123;UBERON:0004121!6.93e-15!169;UBERON:0000924!7.21e-15!173;UBERON:0006601!7.21e-15!173;UBERON:0002619!1.15e-14!22;UBERON:0001950!2.96e-14!20;UBERON:0000153!1.01e-13!129;UBERON:0007811!1.01e-13!129;UBERON:0001871!4.87e-10!7;UBERON:0002308!1.16e-08!9;UBERON:0000125!1.16e-08!9;UBERON:0002420!1.24e-08!9;UBERON:0007245!1.24e-08!9;UBERON:0010009!1.24e-08!9;UBERON:0010011!1.24e-08!9;UBERON:0000454!1.24e-08!9;UBERON:0003076!4.03e-08!15;UBERON:0003057!4.03e-08!15;UBERON:0002298!6.73e-08!8;UBERON:0000200!6.72e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0000988;7.19e-23;3!UBERON:0002038;8.72e-18;1!UBERON:0009661;8.72e-18;1!UBERON:0002950;8.72e-18;1!UBERON:0001891;8.72e-18;1!UBERON:0002680;4.40e-17;9!UBERON:0001895;4.40e-17;9!UBERON:0004733;5.57e-13;12!UBERON:0002028;5.57e-13;12!UBERON:0000200;4.07e-12;6!UBERON:0004732;4.96e-12;13!UBERON:0002298;6.00e-12;6!UBERON:0002771;7.97e-10;2!UBERON:0002148;1.44e-09;2!UBERON:0002702;1.44e-09;2!UBERON:0006331;1.44e-09;2!UBERON:0009662;1.44e-09;2!UBERON:0000955;2.80e-08;68!UBERON:0000125;2.85e-08;9!UBERON:0002308;2.85e-08;9!UBERON:0000073;9.90e-08;53!UBERON:0002616;9.90e-08;53!UBERON:0001870;8.62e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000988,1.25e-22,3;UBERON:0002038,8.72e-18,1;UBERON:0009661,8.72e-18,1;UBERON:0002950,8.72e-18,1;UBERON:0001891,8.72e-18,1;UBERON:0009616,8.72e-18,1;UBERON:0010286,8.72e-18,1;UBERON:0002680,5.20e-17,9;UBERON:0001895,5.20e-17,9;UBERON:0010092,5.20e-17,9;UBERON:0004733,6.31e-13,12;UBERON:0002028,6.31e-13,12;UBERON:0007277,6.31e-13,12;UBERON:0001017,3.77e-12,81;UBERON:0000200,5.08e-12,6;UBERON:0004732,5.56e-12,13;UBERON:0002298,7.91e-12,6;UBERON:0000955,3.67e-11,68;UBERON:0006238,3.67e-11,68;UBERON:0001016,6.62e-11,89;UBERON:0000073,8.62e-11,53;UBERON:0002616,8.62e-11,53;UBERON:0003076,1.82e-10,15;UBERON:0003057,1.82e-10,15;UBERON:0001049,3.27e-10,56;UBERON:0005068,3.27e-10,56;UBERON:0006241,3.27e-10,56;UBERON:0007135,3.27e-10,56;UBERON:0002771,7.98e-10,2;UBERON:0002148,1.71e-09,2;UBERON:0006331,1.71e-09,2;UBERON:0009662,1.71e-09,2;UBERON:0002702,2.02e-09,2;UBERON:0000125,3.07e-08,9;UBERON:0002308,3.07e-08,9;UBERON:0003528,7.59e-08,34;UBERON:0002020,7.59e-08,34;UBERON:0003075,6.16e-07,82;UBERON:0007284,6.16e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.376627918784408,0,0,0.0787107813136792,0,0,0,0,0,0,0.0774672005803016,0,0,0,0.200544447470142,0,0,0,0,0.145398238779565,0,0,0,0,0,0.28769239232215,0,0.47296445977717,0.344745680736619,0.645484683583826,0,0.376484679085209,0,0,0,0,0,0.329851300186716,0,0,0.290209238628584,0,0,0,0,0.217188844705117,0.605399502633369,0,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,1.94826728407911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0.600182192168805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,0,0,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0.215627574859517,0.128343036279748,0,0,0.773288812777695,0.670065061337395,1.27587750330633,1.49801404789436,2.99161459204025,0.414415513436035,0,0,0,0,0.356857977594324,0,0,0,0,0,0.664225598535437,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0.154048617114644,0.15350367472613,0,0,0,0.0852266274161009,0.890320356467374,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0.142283686696828,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0.994147647766298,0.703347082052564,0.111308705022906,0.16480387422676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.927680981618513,1.99613798001194,0,0,0,0,0,0,0.689486746482929,0,0.173624994933292,0,0,0,0.663475559587348,1.77328571372128,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337005664903385,0,0.937057782901357,0.364909578431332,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,0,0,0.90392296312213,0.137041924646751,0,0.50648636764703,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0.600420288709789,0.821432273351958,0,0,0.262887354279314,0,0,0,0,0,0,0.201550417460179,0,0,0,0,0,0,0,0,0.681017030557878,0,0.412618309791701,0.83088067605837,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,1.05786081394152,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,6.9554970994119,1.001527445652,0,0.998361463831671,0.372578417648301,0,0,0,0.285465333544967,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0.327609848846413,0,0,0,0,0,0,0.184105950251841,0,0,0,0.107824811396682,0.157265941855896,0,0,0,0.123935764259002,0,0,0.0788617450012534,0,0,0,0.321146125482298,0,0.798169295285756,0.82046545696302,0.252071696221718,0,0.807378228159255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472763092328763,0.781078098613847,0,0.317079050969534,0,0,0,0,0,0,0.336283722218824,0,0,0,0,0,1.01954599465248,0.131545547125698,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0.158013611732727,0,0,0,0,0,0,0,0.118332000730565,0,0.423387050190929,0,0,0,0,0,0,0,0.102662806856247,2.3196288626764,0,0,0.198950775161368,0,0.11294608203896,0.219881033490858,0,0,0,0,0.245148321753905,0,0.785233868459781,0.297046400327086,0,0,0,0,0,0,0,0,0,0,1.29005624836306,0,0.203974470572744,0,0,0,0,0,0,0,0.253397002022874,0,0,0,0,0.454672189309436,0.267964130156178,0.829169439458779,0.620597975171371,0,0,0,0,0,0.0636471582781649,0,0,0.342233301085281,0,0,0,0,0.320182037633146,0,0.0898252021065869,0,0,0.406896178315738,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.376627918784408,0,0,0.0787107813136792,0,0,0,0,0,0,0.0774672005803016,0,0,0,0.200544447470142,0,0,0,0,0.145398238779565,0,0,0,0,0,0.28769239232215,0,0.47296445977717,0.344745680736619,0.645484683583826,0,0.376484679085209,0,0,0,0,0,0.329851300186716,0,0,0.290209238628584,0,0,0,0,0.217188844705117,0.605399502633369,0,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,1.94826728407911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0.600182192168805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,0,0,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0.215627574859517,0.128343036279748,0,0,0.773288812777695,0.670065061337395,1.27587750330633,1.49801404789436,2.99161459204025,0.414415513436035,0,0,0,0,0.356857977594324,0,0,0,0,0,0.664225598535437,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0.154048617114644,0.15350367472613,0,0,0,0.0852266274161009,0.890320356467374,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0.142283686696828,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0.994147647766298,0.703347082052564,0.111308705022906,0.16480387422676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.927680981618513,1.99613798001194,0,0,0,0,0,0,0.689486746482929,0,0.173624994933292,0,0,0,0.663475559587348,1.77328571372128,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337005664903385,0,0.937057782901357,0.364909578431332,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,0,0,0.90392296312213,0.137041924646751,0,0.50648636764703,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0.600420288709789,0.821432273351958,0,0,0.262887354279314,0,0,0,0,0,0,0.201550417460179,0,0,0,0,0,0,0,0,0.681017030557878,0,0.412618309791701,0.83088067605837,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,1.05786081394152,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,6.9554970994119,1.001527445652,0,0.998361463831671,0.372578417648301,0,0,0,0.285465333544967,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0.327609848846413,0,0,0,0,0,0,0.184105950251841,0,0,0,0.107824811396682,0.157265941855896,0,0,0,0.123935764259002,0,0,0.0788617450012534,0,0,0,0.321146125482298,0,0.798169295285756,0.82046545696302,0.252071696221718,0,0.807378228159255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472763092328763,0.781078098613847,0,0.317079050969534,0,0,0,0,0,0,0.336283722218824,0,0,0,0,0,1.01954599465248,0.131545547125698,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0.158013611732727,0,0,0,0,0,0,0,0.118332000730565,0,0.423387050190929,0,0,0,0,0,0,0,0.102662806856247,2.3196288626764,0,0,0.198950775161368,0,0.11294608203896,0.219881033490858,0,0,0,0,0.245148321753905,0,0.785233868459781,0.297046400327086,0,0,0,0,0,0,0,0,0,0,1.29005624836306,0,0.203974470572744,0,0,0,0,0,0,0,0.253397002022874,0,0,0,0,0.454672189309436,0.267964130156178,0.829169439458779,0.620597975171371,0,0,0,0,0,0.0636471582781649,0,0,0.342233301085281,0,0,0,0,0.320182037633146,0,0.0898252021065869,0,0,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p37@RTN4 | |short_description=p37@RTN4 | ||
}} | }} |
Latest revision as of 16:42, 17 September 2015
Short description: | p37@RTN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_37_at_RTN4_5end |
Coexpression cluster: | C317_Neutrophils_medial_amygdala_occipital_hippocampus_brain_parietal |
Association with transcript: | 349bp_to_AB073351_5end |
EntrezGene: | RTN4 |
HGNC: | 14085 |
UniProt: | Q3LIF4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neutrophil | 3.29e-23 | 3 |
granulocyte | 2.55e-09 | 8 |
blood cell | 5.15e-07 | 11 |