FFCP PHASE1:Hg19::chr15:56035257..56035355,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:56035257..56035355,-
|short_description=p1@PRTG
|description=CAGE_peak_1_at_PRTG_5end
|association_with_transcript=0bp_to_ENST00000561292_5end
|EntrezGen...") |
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(13 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=283659 | |EntrezGene=283659 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26373 | |HGNC=26373 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000561292_5end | |||
|cluster_id=chr15:56035257..56035355,- | |||
|coexpression_cluster_id=C1742 | |||
|description=CAGE_peak_1_at_PRTG_5end | |||
|id=chr15:56035257..56035355,- | |||
|ontology_enrichment_celltype=CL:0000066!9.32e-10!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.45e-10,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;3.14e-08;29!UBERON:0003104;1.94e-07;31 | |||
|ontology_enrichment_disease=DOID:0050687!9.73e-14!143;DOID:305!5.09e-12!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.42e-14,143;DOID:305,1.83e-12,106;DOID:162,8.25e-07,235;DOID:14566,8.74e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0000481!2.88e-17!347;UBERON:0000477!5.81e-14!286;UBERON:0000119!8.14e-14!312;UBERON:0000483!3.03e-13!309;UBERON:0000468!1.64e-12!659;UBERON:0000922!2.52e-12!612;UBERON:0000064!3.14e-12!219;UBERON:0005743!1.22e-11!86;UBERON:0000073!1.69e-11!94;UBERON:0001016!1.69e-11!94;UBERON:0005177!6.69e-11!107;UBERON:0000025!7.18e-11!194;UBERON:0004111!9.71e-11!241;UBERON:0000062!1.17e-10!511;UBERON:0001017!1.90e-10!82;UBERON:0000467!3.04e-10!625;UBERON:0000480!5.12e-10!626;UBERON:0002050!9.09e-10!605;UBERON:0005423!9.09e-10!605;UBERON:0000475!1.72e-09!365;UBERON:0000923!1.83e-09!604;UBERON:0005291!1.83e-09!604;UBERON:0006598!1.83e-09!604;UBERON:0002532!1.83e-09!604;UBERON:0003075!3.10e-09!86;UBERON:0007284!3.10e-09!86;UBERON:0000955!1.40e-08!69;UBERON:0006238!1.40e-08!69;UBERON:0001048!3.04e-08!168;UBERON:0000489!6.71e-08!32;UBERON:0003104!8.87e-08!238;UBERON:0009142!8.87e-08!238;UBERON:0004121!1.09e-07!169;UBERON:0002346!1.25e-07!90;UBERON:0000466!2.20e-07!126;UBERON:0001007!3.93e-07!155;UBERON:0001555!3.93e-07!155;UBERON:0007026!3.93e-07!155;UBERON:0000160!5.18e-07!27;UBERON:0005172!6.24e-07!55;UBERON:0005173!6.24e-07!55;UBERON:0001049!7.67e-07!57;UBERON:0005068!7.67e-07!57;UBERON:0006241!7.67e-07!57;UBERON:0007135!7.67e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0000489;3.73e-08;29!UBERON:0002113;9.32e-07;24!UBERON:0011143;9.32e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,3.64e-13,223;UBERON:0001016,7.74e-11,89;UBERON:0001017,8.29e-11,81;UBERON:0005177,1.02e-10,101;UBERON:0000119,4.74e-10,309;UBERON:0000483,1.49e-09,306;UBERON:0000955,5.59e-09,68;UBERON:0006238,5.59e-09,68;UBERON:0000025,1.47e-08,192;UBERON:0004111,1.54e-08,240;UBERON:0000489,2.03e-08,31;UBERON:0003075,2.30e-08,82;UBERON:0007284,2.30e-08,82;UBERON:0000922,1.09e-07,592;UBERON:0010314,2.97e-07,132;UBERON:0001049,4.56e-07,56;UBERON:0005068,4.56e-07,56;UBERON:0006241,4.56e-07,56;UBERON:0007135,4.56e-07,56;UBERON:0002113,4.93e-07,26;UBERON:0003918,4.93e-07,26;UBERON:0011143,4.93e-07,26;UBERON:0005095,4.93e-07,26;UBERON:0007687,4.93e-07,26;UBERON:0002346,4.98e-07,86;UBERON:0005172,7.19e-07,54;UBERON:0005173,7.19e-07,54 | |||
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| ||
|short_description=p1@PRTG | |||
}} | }} |
Latest revision as of 04:48, 18 September 2015
Short description: | p1@PRTG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRTG_5end |
Coexpression cluster: | C1742_teratocarcinoma_H9_hepatoblastoma_pancreatic_choriocarcinoma_pineal_mesodermal |
Association with transcript: | 0bp_to_ENST00000561292_5end |
EntrezGene: | PRTG |
HGNC: | 26373 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.45e-10 | 253 |
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 3.64e-13 | 223 |
nervous system | 7.74e-11 | 89 |
central nervous system | 8.29e-11 | 81 |
trunk region element | 1.02e-10 | 101 |
cell layer | 4.74e-10 | 309 |
epithelium | 1.49e-09 | 306 |
brain | 5.59e-09 | 68 |
future brain | 5.59e-09 | 68 |
tube | 1.47e-08 | 192 |
anatomical conduit | 1.54e-08 | 240 |
cavitated compound organ | 2.03e-08 | 31 |
neural plate | 2.30e-08 | 82 |
presumptive neural plate | 2.30e-08 | 82 |
embryo | 1.09e-07 | 592 |
structure with developmental contribution from neural crest | 2.97e-07 | 132 |
neural tube | 4.56e-07 | 56 |
neural rod | 4.56e-07 | 56 |
future spinal cord | 4.56e-07 | 56 |
neural keel | 4.56e-07 | 56 |
kidney | 4.93e-07 | 26 |
kidney mesenchyme | 4.93e-07 | 26 |
upper urinary tract | 4.93e-07 | 26 |
kidney rudiment | 4.93e-07 | 26 |
kidney field | 4.93e-07 | 26 |
neurectoderm | 4.98e-07 | 86 |
abdomen element | 7.19e-07 | 54 |
abdominal segment element | 7.19e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.42e-14 | 143 |
carcinoma | 1.83e-12 | 106 |
cancer | 8.25e-07 | 235 |
disease of cellular proliferation | 8.74e-07 | 239 |