FFCP PHASE1:Hg19::chr8:1900842..1900868,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr8:1900842..1900868,+ | |||
|coexpression_cluster_id=C69 | |||
|description=CAGE_peak_at_chr8:1900842..1900868,+ | |description=CAGE_peak_at_chr8:1900842..1900868,+ | ||
|id=chr8:1900842..1900868,+ | |id=chr8:1900842..1900868,+ | ||
|ontology_enrichment_celltype=CL:0000084!7.77e-09!25;CL:0000827!7.77e-09!25;CL:0000037!1.15e-08!172;CL:0000566!1.15e-08!172;CL:0000988!6.24e-08!182;CL:0000784!1.59e-07!3;CL:0000767!3.53e-07!3;CL:0000738!3.86e-07!140 | |ontology_enrichment_celltype=CL:0000084!7.77e-09!25;CL:0000827!7.77e-09!25;CL:0000037!1.15e-08!172;CL:0000566!1.15e-08!172;CL:0000988!6.24e-08!182;CL:0000784!1.59e-07!3;CL:0000767!3.53e-07!3;CL:0000738!3.86e-07!140 | ||
|ontology_enrichment_celltype_v019=CL:0002032;9.17e-13;1!CL:0002127;9.17e-13;1!CL:0000911;9.17e-13;1!CL:0000557;9.17e-13;1!CL:0000814;9.17e-13;1!CL:0000084;9.24e-12;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,7.68e-13,1;CL:0000914,7.68e-13,1;CL:0000911,7.68e-13,1;CL:0000814,7.68e-13,1;CL:0002042,7.68e-13,1;CL:0002039,7.68e-13,1;CL:0002040,7.68e-13,1;CL:0002041,7.68e-13,1;CL:0000084,8.93e-12,25;CL:0000827,8.93e-12,25;CL:0000037,2.42e-08,168;CL:0000988,7.79e-08,177;CL:0000838,7.82e-08,52;CL:0000542,1.12e-07,53;CL:0000051,1.12e-07,53;CL:0000893,4.69e-07,2;CL:0002489,4.69e-07,2;CL:0000809,4.69e-07,2;CL:0000808,4.69e-07,2;CL:0000894,4.69e-07,2;CL:0000806,4.69e-07,2;CL:0000807,4.69e-07,2;CL:0000805,4.69e-07,2;CL:0002425,4.69e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002425;5.13e-07;2!UBERON:0006965;5.13e-07;2 | |||
|ontology_enrichment_disease=DOID:0060058!3.67e-12!10;DOID:2531!1.24e-11!51;DOID:0060083!1.24e-11!51;DOID:1240!5.76e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:2531;2.08e-13;51!DOID:0060083;2.08e-13;51!DOID:1240;2.39e-11;39!DOID:0060058;2.60e-11;10 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,9.24e-22,51;DOID:0060083,9.24e-22,51;DOID:1240,4.19e-14,39;DOID:0060058,2.55e-11,10;DOID:0050686,3.10e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0002370!4.58e-12!4;UBERON:0005058!4.58e-12!4;UBERON:0009113!4.58e-12!4;UBERON:0003295!4.58e-12!4;UBERON:0005562!4.58e-12!4;UBERON:0000974!3.42e-08!10;UBERON:0003351!3.49e-08!6;UBERON:0004177!4.55e-07!7 | |ontology_enrichment_uberon=UBERON:0002370!4.58e-12!4;UBERON:0005058!4.58e-12!4;UBERON:0009113!4.58e-12!4;UBERON:0003295!4.58e-12!4;UBERON:0005562!4.58e-12!4;UBERON:0000974!3.42e-08!10;UBERON:0003351!3.49e-08!6;UBERON:0004177!4.55e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.37e-24;2!UBERON:0005058;1.37e-24;2!UBERON:0009113;1.37e-24;2!UBERON:0004177;2.00e-10;5!UBERON:0005057;2.00e-10;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,7.03e-27,4;UBERON:0005058,7.03e-27,4;UBERON:0009113,7.03e-27,4;UBERON:0003295,7.03e-27,4;UBERON:0005562,7.03e-27,4;UBERON:0003351,3.73e-18,6;UBERON:0004177,1.18e-15,7;UBERON:0005057,1.18e-15,7;UBERON:0000974,3.88e-11,10;UBERON:0003408,3.88e-11,10;UBERON:0001042,3.88e-11,10;UBERON:0009145,3.88e-11,10;UBERON:0006562,3.56e-10,11;UBERON:0009722,3.56e-10,11;UBERON:0007690,3.56e-10,11 | |||
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|short_description=p@chr8:1900842..1900868,+ | |short_description=p@chr8:1900842..1900868,+ | ||
}} | }} |
Latest revision as of 16:35, 31 July 2015
Short description: | p@chr8:1900842..1900868, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr8:1900842..1900868, + |
Coexpression cluster: | C69_anaplastic_CD14_cord_hairy_mycosis_adult_NK |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 7.68e-13 | 1 |
immature NK T cell | 7.68e-13 | 1 |
effector T cell | 7.68e-13 | 1 |
mature NK T cell | 7.68e-13 | 1 |
immature NK T cell stage IV | 7.68e-13 | 1 |
immature NK T cell stage I | 7.68e-13 | 1 |
immature NK T cell stage II | 7.68e-13 | 1 |
immature NK T cell stage III | 7.68e-13 | 1 |
T cell | 8.93e-12 | 25 |
pro-T cell | 8.93e-12 | 25 |
hematopoietic stem cell | 2.42e-08 | 168 |
hematopoietic cell | 7.79e-08 | 177 |
lymphoid lineage restricted progenitor cell | 7.82e-08 | 52 |
lymphocyte | 1.12e-07 | 53 |
common lymphoid progenitor | 1.12e-07 | 53 |
thymocyte | 4.69e-07 | 2 |
double negative thymocyte | 4.69e-07 | 2 |
double-positive, alpha-beta thymocyte | 4.69e-07 | 2 |
DN4 thymocyte | 4.69e-07 | 2 |
DN1 thymic pro-T cell | 4.69e-07 | 2 |
DN2 thymocyte | 4.69e-07 | 2 |
DN3 thymocyte | 4.69e-07 | 2 |
immature single positive thymocyte | 4.69e-07 | 2 |
early T lineage precursor | 4.69e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 7.03e-27 | 4 |
hemolymphoid system gland | 7.03e-27 | 4 |
thymic region | 7.03e-27 | 4 |
pharyngeal gland | 7.03e-27 | 4 |
thymus primordium | 7.03e-27 | 4 |
pharyngeal epithelium | 3.73e-18 | 6 |
hemopoietic organ | 1.18e-15 | 7 |
immune organ | 1.18e-15 | 7 |
neck | 3.88e-11 | 10 |
gland of gut | 3.88e-11 | 10 |
chordate pharynx | 3.88e-11 | 10 |
pharyngeal region of foregut | 3.88e-11 | 10 |
pharynx | 3.56e-10 | 11 |
entire pharyngeal arch endoderm | 3.56e-10 | 11 |
early pharyngeal endoderm | 3.56e-10 | 11 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 9.24e-22 | 51 |
immune system cancer | 9.24e-22 | 51 |
leukemia | 4.19e-14 | 39 |
lymphoma | 2.55e-11 | 10 |
organ system cancer | 3.10e-07 | 137 |