FFCP PHASE1:Hg19::chr4:151501031..151501046,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:151501031..151501046,- | |||
|description=CAGE_peak_at_chr4:151501031..151501046,- | |description=CAGE_peak_at_chr4:151501031..151501046,- | ||
|id=chr4:151501031..151501046,- | |id=chr4:151501031..151501046,- | ||
|ontology_enrichment_celltype=CL:0000055!4.39e-14!180;CL:0000188!2.17e-09!9;CL:0000153!6.88e-08!9;CL:0000447!6.88e-08!9 | |ontology_enrichment_celltype=CL:0000055!4.39e-14!180;CL:0000188!2.17e-09!9;CL:0000153!6.88e-08!9;CL:0000447!6.88e-08!9 | ||
|ontology_enrichment_celltype_v019=CL:0002540;1.44e-12;6!CL:0000138;6.86e-12;6!CL:0000306;1.16e-11;4!CL:0002222;1.16e-11;4!CL:0002224;1.16e-11;4!CL:0000062;2.94e-11;9!CL:0000064;1.17e-09;3!CL:0000067;1.17e-09;3!CL:0005012;1.17e-09;3!CL:0002304;1.17e-09;3!CL:0002504;2.99e-09;3!CL:1000279;2.99e-09;3!CL:1000280;2.99e-09;3!CL:0000153;8.30e-08;9!CL:0000447;8.30e-08;9!CL:0002092;2.24e-07;10!CL:0002588;4.93e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002540,1.18e-12,6;CL:0000058,5.84e-12,6;CL:0000138,5.84e-12,6;CL:0000306,1.21e-11,4;CL:0002222,1.21e-11,4;CL:0002224,1.21e-11,4;CL:0000064,8.45e-10,3;CL:0000067,8.45e-10,3;CL:0005012,8.45e-10,3;CL:0002304,8.45e-10,3;CL:0002504,2.22e-09,3;CL:1000279,2.22e-09,3;CL:1000280,2.22e-09,3;CL:0000062,4.31e-09,11;CL:0000375,4.31e-09,11;CL:0000335,4.31e-09,11;CL:0000153,7.48e-08,9;CL:0000447,7.48e-08,9;CL:0002092,2.00e-07,10;CL:0002588,5.24e-07,2;CL:0000187,7.97e-07,55 | |||
|ontology_enrichment_development_v019=CL:0000335;4.46e-09;11 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007625!6.27e-13!11;UBERON:0001456!1.69e-10!21;UBERON:0000019!3.46e-10!19;UBERON:0000047!3.46e-10!19;UBERON:0004088!3.46e-10!19;UBERON:0003072!3.46e-10!19;UBERON:0003071!3.46e-10!19;UBERON:0004128!3.46e-10!19;UBERON:0000970!1.87e-09!20;UBERON:0000481!1.90e-09!347;UBERON:0002104!8.48e-09!21;UBERON:0001444!7.13e-08!48;UBERON:0002200!9.33e-08!11;UBERON:0006876!9.33e-08!11;UBERON:0000020!1.15e-07!23;UBERON:0001801!2.34e-07!14;UBERON:0002203!2.92e-07!6;UBERON:0001768!2.92e-07!6;UBERON:0001032!3.57e-07!24;UBERON:0004456!3.57e-07!24 | |ontology_enrichment_uberon=UBERON:0007625!6.27e-13!11;UBERON:0001456!1.69e-10!21;UBERON:0000019!3.46e-10!19;UBERON:0000047!3.46e-10!19;UBERON:0004088!3.46e-10!19;UBERON:0003072!3.46e-10!19;UBERON:0003071!3.46e-10!19;UBERON:0004128!3.46e-10!19;UBERON:0000970!1.87e-09!20;UBERON:0000481!1.90e-09!347;UBERON:0002104!8.48e-09!21;UBERON:0001444!7.13e-08!48;UBERON:0002200!9.33e-08!11;UBERON:0006876!9.33e-08!11;UBERON:0000020!1.15e-07!23;UBERON:0001801!2.34e-07!14;UBERON:0002203!2.92e-07!6;UBERON:0001768!2.92e-07!6;UBERON:0001032!3.57e-07!24;UBERON:0004456!3.57e-07!24 | ||
|ontology_enrichment_uberon_v019=UBERON:0007625;8.54e-20;11!UBERON:0001456;1.39e-14;21!UBERON:0000019;2.81e-13;19!UBERON:0000047;2.81e-13;19!UBERON:0004088;2.81e-13;19!UBERON:0010230;2.81e-13;19!UBERON:0000970;1.65e-12;20!UBERON:0002104;8.18e-12;21!UBERON:0010077;1.16e-11;4!UBERON:0005389;1.16e-11;4!UBERON:0000484;1.16e-11;4!UBERON:0000965;1.16e-11;4!UBERON:0001803;1.16e-11;4!UBERON:0001444;1.19e-10;48!UBERON:0000020;1.32e-10;23!UBERON:0001032;4.43e-10;24!UBERON:0004456;4.43e-10;24!UBERON:0001778;1.17e-09;3!UBERON:0001775;1.17e-09;3!UBERON:0001474;2.21e-09;18!UBERON:0001801;2.90e-09;14!UBERON:0000160;5.19e-09;17!UBERON:0000033;5.34e-09;50!UBERON:0001434;1.35e-07;36!UBERON:0000488;2.48e-07;4!UBERON:0000153;5.16e-07;54!UBERON:0007811;5.23e-07;52!UBERON:0010371;5.30e-07;31!UBERON:0005409;9.30e-07;22!UBERON:0003104;9.46e-07;7!UBERON:0009142;9.46e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,5.68e-20,11;UBERON:0001456,6.40e-14,22;UBERON:0001444,1.20e-13,49;UBERON:0000033,7.82e-13,56;UBERON:0000019,1.29e-12,20;UBERON:0000047,1.29e-12,20;UBERON:0010312,1.29e-12,20;UBERON:0004088,1.29e-12,20;UBERON:0010230,1.29e-12,20;UBERON:0003072,1.29e-12,20;UBERON:0004128,1.29e-12,20;UBERON:0003071,1.29e-12,20;UBERON:0000970,6.46e-12,21;UBERON:0002104,6.46e-12,21;UBERON:0010077,1.21e-11,4;UBERON:0005389,1.21e-11,4;UBERON:0000484,1.21e-11,4;UBERON:0002546,1.21e-11,4;UBERON:0000965,1.21e-11,4;UBERON:0001803,1.21e-11,4;UBERON:0003073,1.21e-11,4;UBERON:0005426,1.21e-11,4;UBERON:0000153,3.76e-11,62;UBERON:0007811,3.76e-11,62;UBERON:0000020,3.62e-10,24;UBERON:0001032,3.62e-10,24;UBERON:0004456,3.62e-10,24;UBERON:0001778,8.45e-10,3;UBERON:0001775,8.45e-10,3;UBERON:0001801,2.56e-09,14;UBERON:0000160,5.98e-09,17;UBERON:0000488,1.95e-07,4;UBERON:0005085,2.03e-07,31 | |||
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| ||
|short_description=p@chr4:151501031..151501046,- | |short_description=p@chr4:151501031..151501046,- | ||
}} | }} |
Latest revision as of 02:12, 30 July 2015
Short description: | p@chr4:151501031..151501046, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:151501031..151501046, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of the bone marrow | 1.18e-12 | 6 |
chondroblast | 5.84e-12 | 6 |
chondrocyte | 5.84e-12 | 6 |
crystallin accumulating cell | 1.21e-11 | 4 |
vertebrate lens cell | 1.21e-11 | 4 |
lens epithelial cell | 1.21e-11 | 4 |
ciliated cell | 8.45e-10 | 3 |
ciliated epithelial cell | 8.45e-10 | 3 |
multi-ciliated epithelial cell | 8.45e-10 | 3 |
non-pigmented ciliary epithelial cell | 8.45e-10 | 3 |
enteric smooth muscle cell | 2.22e-09 | 3 |
smooth muscle cell of large intestine | 2.22e-09 | 3 |
smooth muscle cell of colon | 2.22e-09 | 3 |
osteoblast | 4.31e-09 | 11 |
osteoprogenitor cell | 4.31e-09 | 11 |
mesenchyme condensation cell | 4.31e-09 | 11 |
GAG secreting cell | 7.48e-08 | 9 |
carbohydrate secreting cell | 7.48e-08 | 9 |
bone marrow cell | 2.00e-07 | 10 |
smooth muscle cell of the umbilical vein | 5.24e-07 | 2 |
muscle cell | 7.97e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 5.68e-20 | 11 |
face | 6.40e-14 | 22 |
subdivision of head | 1.20e-13 | 49 |
head | 7.82e-13 | 56 |
camera-type eye | 1.29e-12 | 20 |
simple eye | 1.29e-12 | 20 |
immature eye | 1.29e-12 | 20 |
ocular region | 1.29e-12 | 20 |
eyeball of camera-type eye | 1.29e-12 | 20 |
optic cup | 1.29e-12 | 20 |
optic vesicle | 1.29e-12 | 20 |
eye primordium | 1.29e-12 | 20 |
eye | 6.46e-12 | 21 |
visual system | 6.46e-12 | 21 |
cuboidal epithelium | 1.21e-11 | 4 |
transparent eye structure | 1.21e-11 | 4 |
simple cuboidal epithelium | 1.21e-11 | 4 |
cranial placode | 1.21e-11 | 4 |
lens of camera-type eye | 1.21e-11 | 4 |
epithelium of lens | 1.21e-11 | 4 |
lens placode | 1.21e-11 | 4 |
lens vesicle | 1.21e-11 | 4 |
anterior region of body | 3.76e-11 | 62 |
craniocervical region | 3.76e-11 | 62 |
sense organ | 3.62e-10 | 24 |
sensory system | 3.62e-10 | 24 |
entire sense organ system | 3.62e-10 | 24 |
ciliary epithelium | 8.45e-10 | 3 |
ciliary body | 8.45e-10 | 3 |
anterior segment of eyeball | 2.56e-09 | 14 |
intestine | 5.98e-09 | 17 |
atypical epithelium | 1.95e-07 | 4 |
ectodermal placode | 2.03e-07 | 31 |