FFCP PHASE1:Hg19::chr4:183006194..183006207,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=29bp_to_ENST00000505537_5end | |association_with_transcript=29bp_to_ENST00000505537_5end | ||
|cluster_id=chr4:183006194..183006207,- | |||
|coexpression_cluster_id=C3439 | |||
|description=CAGE_peak_2_at_ENST00000505537_5end | |description=CAGE_peak_2_at_ENST00000505537_5end | ||
|id=chr4:183006194..183006207,- | |id=chr4:183006194..183006207,- | ||
|ontology_enrichment_celltype=CL:0000064!5.99e-15!3;CL:0005012!5.99e-15!3;CL:0000067!5.99e-15!3;CL:0002304!5.99e-15!3;CL:0000243!1.17e-11!15;CL:0000125!1.17e-11!15;CL:0000030!1.17e-11!15;CL:0000339!1.17e-11!15;CL:0002319!2.08e-11!25;CL:0000133!7.33e-11!59;CL:0000306!1.10e-10!4;CL:0002222!1.10e-10!4;CL:0002224!1.10e-10!4;CL:0000095!2.49e-10!17;CL:0000123!2.49e-10!17;CL:0000128!4.90e-10!7;CL:0000126!4.90e-10!7;CL:0000127!4.90e-10!7;CL:0002453!4.90e-10!7;CL:0000062!5.66e-10!11;CL:0000375!5.66e-10!11;CL:0000335!5.66e-10!11;CL:0000075!2.84e-09!27;CL:0000221!1.38e-08!71 | |ontology_enrichment_celltype=CL:0000064!5.99e-15!3;CL:0005012!5.99e-15!3;CL:0000067!5.99e-15!3;CL:0002304!5.99e-15!3;CL:0000243!1.17e-11!15;CL:0000125!1.17e-11!15;CL:0000030!1.17e-11!15;CL:0000339!1.17e-11!15;CL:0002319!2.08e-11!25;CL:0000133!7.33e-11!59;CL:0000306!1.10e-10!4;CL:0002222!1.10e-10!4;CL:0002224!1.10e-10!4;CL:0000095!2.49e-10!17;CL:0000123!2.49e-10!17;CL:0000128!4.90e-10!7;CL:0000126!4.90e-10!7;CL:0000127!4.90e-10!7;CL:0002453!4.90e-10!7;CL:0000062!5.66e-10!11;CL:0000375!5.66e-10!11;CL:0000335!5.66e-10!11;CL:0000075!2.84e-09!27;CL:0000221!1.38e-08!71 | ||
|ontology_enrichment_celltype_v019=CL:0000064;4.48e-44;3!CL:0000067;4.48e-44;3!CL:0005012;4.48e-44;3!CL:0002304;4.48e-44;3!CL:0000306;4.39e-15;4!CL:0002222;4.39e-15;4!CL:0002224;4.39e-15;4!CL:0000062;8.67e-15;9!CL:0000075;2.57e-13;27!CL:0000710;3.90e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,4.49e-44,3;CL:0000067,4.49e-44,3;CL:0005012,4.49e-44,3;CL:0002304,4.49e-44,3;CL:0000306,3.94e-15,4;CL:0002222,3.94e-15,4;CL:0002224,3.94e-15,4;CL:0000075,2.47e-13,27;CL:0000062,3.51e-12,11;CL:0000375,3.51e-12,11;CL:0000335,3.51e-12,11;CL:0000710,3.91e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000335;3.25e-12;11 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5662;2.75e-15;1!DOID:4468;1.79e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:5662,3.66e-15,1;DOID:4468,1.73e-08,2 | |||
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| ||
|short_description=p2@ENST00000505537 | |short_description=p2@ENST00000505537 | ||
}} | }} |
Latest revision as of 03:43, 30 July 2015
Short description: | p2@ENST00000505537 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ENST00000505537_5end |
Coexpression cluster: | C3439_Ciliary_Lens_teratocarcinoma_liposarcoma_renal_Iris_clear |
Association with transcript: | 29bp_to_ENST00000505537_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 4.49e-44 | 3 |
ciliated epithelial cell | 4.49e-44 | 3 |
multi-ciliated epithelial cell | 4.49e-44 | 3 |
non-pigmented ciliary epithelial cell | 4.49e-44 | 3 |
crystallin accumulating cell | 3.94e-15 | 4 |
vertebrate lens cell | 3.94e-15 | 4 |
lens epithelial cell | 3.94e-15 | 4 |
columnar/cuboidal epithelial cell | 2.47e-13 | 27 |
osteoblast | 3.51e-12 | 11 |
osteoprogenitor cell | 3.51e-12 | 11 |
mesenchyme condensation cell | 3.51e-12 | 11 |
neurecto-epithelial cell | 3.91e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 4.49e-44 | 3 |
ciliary body | 4.49e-44 | 3 |
atypical epithelium | 2.89e-33 | 4 |
pigment epithelium of eye | 1.33e-32 | 11 |
anterior segment of eyeball | 1.19e-25 | 14 |
vasculature of eye | 1.97e-22 | 6 |
uvea | 1.97e-22 | 6 |
vasculature of head | 1.97e-22 | 6 |
camera-type eye | 5.50e-18 | 20 |
simple eye | 5.50e-18 | 20 |
immature eye | 5.50e-18 | 20 |
ocular region | 5.50e-18 | 20 |
eyeball of camera-type eye | 5.50e-18 | 20 |
optic cup | 5.50e-18 | 20 |
optic vesicle | 5.50e-18 | 20 |
eye primordium | 5.50e-18 | 20 |
eye | 3.93e-17 | 21 |
visual system | 3.93e-17 | 21 |
face | 2.35e-16 | 22 |
cuboidal epithelium | 3.94e-15 | 4 |
transparent eye structure | 3.94e-15 | 4 |
simple cuboidal epithelium | 3.94e-15 | 4 |
cranial placode | 3.94e-15 | 4 |
lens of camera-type eye | 3.94e-15 | 4 |
epithelium of lens | 3.94e-15 | 4 |
lens placode | 3.94e-15 | 4 |
lens vesicle | 3.94e-15 | 4 |
sense organ | 5.37e-15 | 24 |
sensory system | 5.37e-15 | 24 |
entire sense organ system | 5.37e-15 | 24 |
vasculature of organ | 1.56e-12 | 11 |
ectodermal placode | 1.30e-11 | 31 |
external ectoderm | 5.00e-08 | 8 |
subdivision of head | 2.51e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 3.66e-15 | 1 |
clear cell adenocarcinoma | 1.73e-08 | 2 |