FFCP PHASE1:Hg19::chr4:40632143..40632170,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54502 | |EntrezGene=54502 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30358 | |HGNC=30358 | ||
|TSSclassifier=strong | |||
|UniProt=D6RFL5 | |UniProt=D6RFL5 | ||
|association_with_transcript=-3bp_to_ENST00000514782_5end | |association_with_transcript=-3bp_to_ENST00000514782_5end | ||
|cluster_id=chr4:40632143..40632170,- | |||
|description=CAGE_peak_15_at_RBM47_5end | |description=CAGE_peak_15_at_RBM47_5end | ||
|id=chr4:40632143..40632170,- | |id=chr4:40632143..40632170,- | ||
|ontology_enrichment_celltype=CL:0002009!1.33e-29!65;CL:0000860!3.76e-29!45;CL:0000766!1.33e-28!76;CL:0002194!7.99e-28!63;CL:0000576!7.99e-28!63;CL:0000040!7.99e-28!63;CL:0000559!7.99e-28!63;CL:0000557!1.48e-27!71;CL:0002057!3.65e-27!42;CL:0000839!3.21e-25!70;CL:0000738!3.99e-20!140;CL:0000763!5.87e-19!112;CL:0000049!5.87e-19!112;CL:0002087!1.18e-16!119;CL:0002031!3.21e-16!124;CL:0002032!1.10e-13!165;CL:0000837!1.10e-13!165;CL:0000037!2.89e-13!172;CL:0000566!2.89e-13!172;CL:0000988!2.40e-11!182 | |ontology_enrichment_celltype=CL:0002009!1.33e-29!65;CL:0000860!3.76e-29!45;CL:0000766!1.33e-28!76;CL:0002194!7.99e-28!63;CL:0000576!7.99e-28!63;CL:0000040!7.99e-28!63;CL:0000559!7.99e-28!63;CL:0000557!1.48e-27!71;CL:0002057!3.65e-27!42;CL:0000839!3.21e-25!70;CL:0000738!3.99e-20!140;CL:0000763!5.87e-19!112;CL:0000049!5.87e-19!112;CL:0002087!1.18e-16!119;CL:0002031!3.21e-16!124;CL:0002032!1.10e-13!165;CL:0000837!1.10e-13!165;CL:0000037!2.89e-13!172;CL:0000566!2.89e-13!172;CL:0000988!2.40e-11!182 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.89e-30;33!CL:0002057;1.89e-30;33!CL:0000473;5.04e-24;39!CL:0000234;5.04e-24;39!CL:0000576;3.79e-15;48!CL:0000766;9.63e-10;69!CL:0000840;5.40e-08;5!CL:0001014;8.37e-07;2!CL:0001016;8.37e-07;2!CL:0000738;8.66e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.42e-28,42;CL:0002057,7.42e-28,42;CL:0002009,3.65e-27,61;CL:0000473,4.97e-26,48;CL:0000234,4.97e-26,48;CL:0000766,1.82e-24,72;CL:0000557,3.76e-24,67;CL:0002194,9.45e-24,59;CL:0000576,9.45e-24,59;CL:0000040,9.45e-24,59;CL:0000559,9.45e-24,59;CL:0000839,1.33e-20,66;CL:0000738,2.61e-19,136;CL:0002031,2.74e-18,120;CL:0000763,1.14e-16,108;CL:0000049,1.14e-16,108;CL:0002087,1.19e-16,115;CL:0002032,5.96e-15,161;CL:0000837,5.96e-15,161;CL:0000037,5.73e-14,168;CL:0000988,8.03e-13,177;CL:0000840,4.13e-08,5;CL:0001029,4.13e-08,5;CL:0001014,6.20e-07,2;CL:0001016,6.20e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002057;2.52e-20;42 | |||
|ontology_enrichment_disease=DOID:305!4.62e-09!106 | |ontology_enrichment_disease=DOID:305!4.62e-09!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.19e-28!102;UBERON:0003061!1.19e-28!102;UBERON:0002193!4.71e-26!112;UBERON:0002371!2.99e-23!80;UBERON:0001474!1.58e-21!86;UBERON:0002405!1.11e-19!115;UBERON:0004765!5.60e-17!101;UBERON:0001434!5.60e-17!101;UBERON:0000926!2.12e-07!448;UBERON:0004120!2.12e-07!448;UBERON:0006603!2.12e-07!448 | |ontology_enrichment_uberon=UBERON:0002390!1.19e-28!102;UBERON:0003061!1.19e-28!102;UBERON:0002193!4.71e-26!112;UBERON:0002371!2.99e-23!80;UBERON:0001474!1.58e-21!86;UBERON:0002405!1.11e-19!115;UBERON:0004765!5.60e-17!101;UBERON:0001434!5.60e-17!101;UBERON:0000926!2.12e-07!448;UBERON:0004120!2.12e-07!448;UBERON:0006603!2.12e-07!448 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.29e-24,98;UBERON:0003061,9.29e-24,98;UBERON:0002193,8.23e-21,108;UBERON:0002371,1.60e-20,76;UBERON:0001474,3.16e-20,82;UBERON:0004765,7.90e-18,90;UBERON:0002405,3.48e-17,93;UBERON:0001434,2.24e-15,100;UBERON:0003081,1.71e-07,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83392173795083,3.28402357799783,2.2826126580967,0,0.383829398097213,0.464448369948228,0,0,0,0,0,0,0,1.00272223735071,0.868043482863407,0.895661896959697,0.971680998056939,0.515151135268373,1.30858414901608,1.51150377475524,0.242584061187816,0.464858073811369,0.822335776043652,2.47765096716083,2.3015391385772,2.81776777182011,2.36482229888585,0.689491361473237,1.93645405075148,4.06279459783025,0.941211697713023,1.09162460023138,0.898893937780338,0.612167784741805,2.88836124368484,1.91801137739712,2.96866170168044,2.59302754908121,2.13112375266347,1.45104619314292,1.70215567407342,2.4912889959823,3.01498398308092,4.17186334736161,3.69221035998698,0.605399502633369,0.736555271975129,0.949387162322653,0,0,0,0.22465726229299,0.300353785683013,0,0.570025487482497,0.19891667719909,0.182664153764634,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.392937226493138,0.364295288292542,0,1.29818957461873,0.696518949197069,1.46253756570752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,0.265059536642971,0.464775771478074,0.932949495138334,0.252320850875628,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0.134831308160164,0,0,0,0,0,0,0,0.982827216677626,1.77236972004421,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0.790204397959275,0,0.738651018262192,0.702012795417713,1.0404181360211,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99602809578873,0,4.55857064779639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276242966807689,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0.412164046590889,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,0.470719003883896,0,0,0,0,1.01489521846434,0.764637207142375,0.569647187174163,1.19115887728894,2.46817363851717,0.648473311192717,1.08006287447623,2.37937552888281,0.747768497892312,0.962479855263359,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0.851692475380653,0,0,0,0,0,0,0,0,0,0,1.12284324244932,0.293016358543788,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,1.0077309914171,0,3.20020494198781,0,0.718946809178615,2.68531762013414,0,0,0,0,0,0,0,0.7812832832557,2.0990399999087,0,0.341380344856499,0.508507300585533,1.41832609060762,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0.69169171316418,3.59030577639089,4.88913173649036,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0.176915129006678,0,0,0,0,0.269604531922708,0,0,0,0.19566461893209,0.242780379534093,1.57833761139756,0,0,0.063186579628488,0.150323419414493,0.103688191397247,0,0,0,0,0.284609546029793,0,0.173559738335131,0,0.261177619741208,0.34945333648406,0,0.677294319023596,0.65780385377567,0.328461828212837,0.290967049465258,1.5003541537555,0,0,0,0,1.95551382734803,0.480952921509202,0.85381197895741,0,0.288180834308212,0,0,0.576219191952599,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,1.16495949527454,0,0,0,0.492137407573744,4.31833993535501,0,0.136203406111576,0.482259445395058,1.2378549293751,1.24632101408756,1.349843349309,1.5476039091159,0,0,0.788057072991982,0.891727998294968,0,0.537862017998534,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0,0.171086837884329,2.11444506695002,0.747511887973863,0.943225830597996,2.89967338743037,0.992332043623902,0,0,1.27668251554036,0,0,0,0,1.09937867375164,0,0.122026264901963,0,0,0.443716206147409,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.974301544196942,0.265729680626726,0.163565394255844,0,0.245772908753719,0.422624246717254,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0.490738592505128,0,0.183428598521679,0.462102664601353,0,0,0,0.0752103283492573,0,0,5.50004058410987,0,1.33070477595341,0,0,0,0,0,1.09651553371436,0,0,0.127762427639595,0,0,0,0,0.443511850813194,0.230467975111559,0,0,0,0.118193840883968,0.222462803784138,0.313972371402056,0.157115589916002,0.560544326627578,0,0,0,0.571812353413251,0.47404083519818,0.23248285073625,0,0,0,0,0,0.860454717640555,0,0,0.846774100381858,0.22910686854405,0,0,0.559277158988962,0.196300467230486,0,0,0,0,0,0,0.198950775161368,0,0,0.109940516745429,0.452888530700021,0.0771741581079447,0,0,0,0.235676547101626,0,0.297046400327086,0,0,0.845855261818682,0.837952543656503,10.9935271517422,0,0,1.60482733378337,0.730336388246517,0.458729283404541,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0.101988829741982,1.06886962106224,0,0.752122617877125,0.0757786982182394,0.267964130156178,0,0,0.639701945702943,0.476128862927481,0,0.248298857183432,0,2.41859201457027,4.04234377916439,0.217716747896961,0,0.336760265072938,0.573777643141411,0.332660356546013,0.488419611665847,0,0,0,0,0,0,0,0,2.56454793842586 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83392173795083,3.28402357799783,2.2826126580967,0,0.383829398097213,0.464448369948228,0,0,0,0,0,0,0,1.00272223735071,0.868043482863407,0.895661896959697,0.971680998056939,0.515151135268373,1.30858414901608,1.51150377475524,0.242584061187816,0.464858073811369,0.822335776043652,2.47765096716083,2.3015391385772,2.81776777182011,2.36482229888585,0.689491361473237,1.93645405075148,4.06279459783025,0.941211697713023,1.09162460023138,0.898893937780338,0.612167784741805,2.88836124368484,1.91801137739712,2.96866170168044,2.59302754908121,2.13112375266347,1.45104619314292,1.70215567407342,2.4912889959823,3.01498398308092,4.17186334736161,3.69221035998698,0.605399502633369,0.736555271975129,0.949387162322653,0,0,0,0.22465726229299,0.300353785683013,0,0.570025487482497,0.19891667719909,0.182664153764634,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.392937226493138,0.364295288292542,0,1.29818957461873,0.696518949197069,1.46253756570752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,0.265059536642971,0.464775771478074,0.932949495138334,0.252320850875628,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0.134831308160164,0,0,0,0,0,0,0,0.982827216677626,1.77236972004421,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0.790204397959275,0,0.738651018262192,0.702012795417713,1.0404181360211,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99602809578873,0,4.55857064779639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276242966807689,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0.412164046590889,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,0.470719003883896,0,0,0,0,1.01489521846434,0.764637207142375,0.569647187174163,1.19115887728894,2.46817363851717,0.648473311192717,1.08006287447623,2.37937552888281,0.747768497892312,0.962479855263359,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0.851692475380653,0,0,0,0,0,0,0,0,0,0,1.12284324244932,0.293016358543788,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,1.0077309914171,0,3.20020494198781,0,0.718946809178615,2.68531762013414,0,0,0,0,0,0,0,0.7812832832557,2.0990399999087,0,0.341380344856499,0.508507300585533,1.41832609060762,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0.69169171316418,3.59030577639089,4.88913173649036,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0.176915129006678,0,0,0,0,0.269604531922708,0,0,0,0.19566461893209,0.242780379534093,1.57833761139756,0,0,0.063186579628488,0.150323419414493,0.103688191397247,0,0,0,0,0.284609546029793,0,0.173559738335131,0,0.261177619741208,0.34945333648406,0,0.677294319023596,0.65780385377567,0.328461828212837,0.290967049465258,1.5003541537555,0,0,0,0,1.95551382734803,0.480952921509202,0.85381197895741,0,0.288180834308212,0,0,0.576219191952599,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,1.16495949527454,0,0,0,0.492137407573744,4.31833993535501,0,0.136203406111576,0.482259445395058,1.2378549293751,1.24632101408756,1.349843349309,1.5476039091159,0,0,0.788057072991982,0.891727998294968,0,0.537862017998534,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0,0.171086837884329,2.11444506695002,0.747511887973863,0.943225830597996,2.89967338743037,0.992332043623902,0,0,1.27668251554036,0,0,0,0,1.09937867375164,0,0.122026264901963,0,0,0.443716206147409,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.974301544196942,0.265729680626726,0.163565394255844,0,0.245772908753719,0.422624246717254,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0.490738592505128,0,0.183428598521679,0.462102664601353,0,0,0,0.0752103283492573,0,0,5.50004058410987,0,1.33070477595341,0,0,0,0,0,1.09651553371436,0,0,0.127762427639595,0,0,0,0,0.443511850813194,0.230467975111559,0,0,0,0.118193840883968,0.222462803784138,0.313972371402056,0.157115589916002,0.560544326627578,0,0,0,0.571812353413251,0.47404083519818,0.23248285073625,0,0,0,0,0,0.860454717640555,0,0,0.846774100381858,0.22910686854405,0,0,0.559277158988962,0.196300467230486,0,0,0,0,0,0,0.198950775161368,0,0,0.109940516745429,0.452888530700021,0.0771741581079447,0,0,0,0.235676547101626,0,0.297046400327086,0,0,0.845855261818682,0.837952543656503,10.9935271517422,0,0,1.60482733378337,0.730336388246517,0.458729283404541,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0.101988829741982,1.06886962106224,0,0.752122617877125,0.0757786982182394,0.267964130156178,0,0,0.639701945702943,0.476128862927481,0,0.248298857183432,0,2.41859201457027,4.04234377916439,0.217716747896961,0,0.336760265072938,0.573777643141411,0.332660356546013,0.488419611665847,0,0,0,0,0,0,0,0,2.56454793842586 | ||
|short_description=p15@RBM47 | |short_description=p15@RBM47 | ||
}} | }} |
Latest revision as of 18:52, 17 September 2015
Short description: | p15@RBM47 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_RBM47_5end |
Coexpression cluster: | NA |
Association with transcript: | -3bp_to_ENST00000514782_5end |
EntrezGene: | RBM47 |
HGNC: | 30358 |
UniProt: | D6RFL5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.42e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.42e-28 | 42 |
macrophage dendritic cell progenitor | 3.65e-27 | 61 |
defensive cell | 4.97e-26 | 48 |
phagocyte | 4.97e-26 | 48 |
myeloid leukocyte | 1.82e-24 | 72 |
granulocyte monocyte progenitor cell | 3.76e-24 | 67 |
monopoietic cell | 9.45e-24 | 59 |
monocyte | 9.45e-24 | 59 |
monoblast | 9.45e-24 | 59 |
promonocyte | 9.45e-24 | 59 |
myeloid lineage restricted progenitor cell | 1.33e-20 | 66 |
leukocyte | 2.61e-19 | 136 |
hematopoietic lineage restricted progenitor cell | 2.74e-18 | 120 |
myeloid cell | 1.14e-16 | 108 |
common myeloid progenitor | 1.14e-16 | 108 |
nongranular leukocyte | 1.19e-16 | 115 |
hematopoietic oligopotent progenitor cell | 5.96e-15 | 161 |
hematopoietic multipotent progenitor cell | 5.96e-15 | 161 |
hematopoietic stem cell | 5.73e-14 | 168 |
hematopoietic cell | 8.03e-13 | 177 |
immature conventional dendritic cell | 4.13e-08 | 5 |
common dendritic progenitor | 4.13e-08 | 5 |
CD1a-positive Langerhans cell | 6.20e-07 | 2 |
immature CD1a-positive Langerhans cell | 6.20e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.29e-24 | 98 |
blood island | 9.29e-24 | 98 |
hemolymphoid system | 8.23e-21 | 108 |
bone marrow | 1.60e-20 | 76 |
bone element | 3.16e-20 | 82 |
skeletal element | 7.90e-18 | 90 |
immune system | 3.48e-17 | 93 |
skeletal system | 2.24e-15 | 100 |
lateral plate mesoderm | 1.71e-07 | 203 |