FFCP PHASE1:Hg19::chr16:19421957..19421978,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:19421957..19421978,+
|short_description=p5@TMC5
|description=CAGE_peak_5_at_TMC5_5end
|association_with_transcript=-66bp_to_ENST00000381414_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79838 | |EntrezGene=79838 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22999 | |HGNC=22999 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-66bp_to_ENST00000381414_5end | |||
|cluster_id=chr16:19421957..19421978,+ | |||
|description=CAGE_peak_5_at_TMC5_5end | |||
|id=chr16:19421957..19421978,+ | |||
|ontology_enrichment_celltype=CL:0000039!3.62e-09!7;CL:0000586!3.62e-09!7;CL:0000066!6.36e-09!254 | |||
|ontology_enrichment_celltype_v019=CL:0000039;3.95e-07;7!CL:0000586;3.95e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,5.59e-07,7;CL:0000586,5.59e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0008947;3.08e-25;29!UBERON:0006595;6.22e-14;86!UBERON:0001041;4.39e-08;30 | |||
|ontology_enrichment_disease=DOID:305!4.48e-27!106;DOID:0050687!6.19e-21!143;DOID:162!1.44e-11!235;DOID:14566!6.42e-11!239;DOID:299!2.40e-09!25 | |||
|ontology_enrichment_disease_v019=DOID:3493;2.46e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.83e-14,106;DOID:0050687,1.60e-12,143;DOID:3493,2.70e-07,2;DOID:162,6.58e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0004921!8.43e-24!129;UBERON:0004185!8.43e-24!129;UBERON:0001007!1.96e-21!155;UBERON:0001555!1.96e-21!155;UBERON:0007026!1.96e-21!155;UBERON:0004119!2.40e-21!169;UBERON:0000925!2.40e-21!169;UBERON:0006595!2.40e-21!169;UBERON:0000077!2.66e-19!130;UBERON:0001041!1.85e-15!98;UBERON:0000065!5.06e-14!53;UBERON:0008947!6.44e-14!38;UBERON:0003258!6.44e-14!38;UBERON:0001004!2.77e-13!72;UBERON:0001737!3.06e-12!9;UBERON:0000072!1.34e-10!46;UBERON:0005409!3.92e-10!35;UBERON:0001557!1.69e-09!19;UBERON:0000464!3.96e-09!104;UBERON:0000466!8.44e-09!126;UBERON:0000160!1.32e-08!27;UBERON:0000063!1.71e-07!97;UBERON:0005153!2.67e-07!37;UBERON:0007023!2.85e-07!115;UBERON:0002294!4.45e-07!7;UBERON:0001173!4.45e-07!7;UBERON:0004912!4.45e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.66e-18;9!UBERON:0001557;1.66e-18;9!UBERON:0004921;7.13e-14;33!UBERON:0000065;2.73e-13;44!UBERON:0005409;2.96e-11;22!UBERON:0002294;3.31e-10;7!UBERON:0001173;3.31e-10;7!UBERON:0000072;3.74e-10;37!UBERON:0001004;3.98e-10;65!UBERON:0003127;1.39e-07;2!UBERON:0002394;1.93e-07;4!UBERON:0003928;1.93e-07;4!UBERON:0006562;2.69e-07;2!UBERON:0000160;3.04e-07;17!UBERON:0000341;3.54e-07;2!UBERON:0001041;6.90e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,2.70e-24,118;UBERON:0001007,1.92e-20,145;UBERON:0001555,1.92e-20,145;UBERON:0007026,1.92e-20,145;UBERON:0004119,5.22e-20,160;UBERON:0000925,5.22e-20,160;UBERON:0006595,5.22e-20,160;UBERON:0001737,3.91e-19,9;UBERON:0001041,4.08e-19,87;UBERON:0008947,1.84e-18,38;UBERON:0003258,1.84e-18,38;UBERON:0000065,5.23e-15,54;UBERON:0001004,7.55e-15,74;UBERON:0001557,1.37e-10,19;UBERON:0000072,1.89e-10,47;UBERON:0011216,2.17e-10,223;UBERON:0005409,1.06e-09,25;UBERON:0002294,7.48e-08,9;UBERON:0001173,7.48e-08,9;UBERON:0004912,7.48e-08,9;UBERON:0003127,1.29e-07,2;UBERON:0000341,2.78e-07,2;UBERON:0000160,3.09e-07,17;UBERON:0001048,5.74e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70272798147026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487894824518382,0.530119073285941,0.464775771478074,0.207322110030741,0.504641701751257,1.45990943630332,0,0,0,0,0,1.53798840051797,1.85443159085912,1.68707720918437,2.42646740011267,1.74303555273925,1.66089433377768,1.61797569792197,3.53198637225623,0.769494313892781,0,0,0,0,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0.276242966807689,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0.223874754722178,0,0,0,0,0,2.47298427954533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510450849978337,2.12431339796655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35359501941948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0.500547425135725,0,0,0,0,0,0,2.24568648489864,0,0,0,0,0,0,0,0,0,0,0,0,2.98871982376605,3.03912307084262,0,0,0,0,1.70749867179921,7.69791051105119,0,0,0,0,0,0,0,0.260427761085233,2.27395999990109,0,0.682760689712998,2.03402920234213,0,0,0,0,0,0,0,0,0,0,0,0,1.07730361905316,0,9.45312007991047,6.55230804191337,2.06430006651815,0,0.183195186803725,0.533034776018635,0,0,0.498635045700469,0,0,0,0,0.476809736941136,0.210998064528027,0.652931232636591,0.141353071433941,0,2.98578579323551,2.12298154808014,1.22206028986725,0,0,0,0.134802265961354,0,0,0,0.586993856796269,0,0,1.20990716048664,0,0,0,0.103688191397247,0,0,0,0,0,0,0.520679215005393,0.195984794828755,0.609414446062818,0.52418000472609,0,0.677294319023596,0.950161122120412,0.903270027585302,0.193978032976839,0,1.35588444468319,0,0,0.126621591911757,1.17330829640882,0.240476460754601,1.28071796843612,0.19980960958213,2.3054466744657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0,0.964518890790115,1.2378549293751,0.83088067605837,0,0.77380195455795,0,0,0,0,0.105600336519406,0,0.191915197319445,0,0,0,0,0,0,0,2.29859058098149,0,0.339936274560377,0.732761168390412,0,0,0,0.855434189421647,9.16259529011673,5.87330769122321,10.2182798314783,4.14239055347196,0,0,0.365377795142688,0,0,0.5013797880454,0,0.327872630709804,2.19875734750328,0,0.122026264901963,0,1.14681839138014,0.110929051536852,0.0620964029413835,0,0.124980407962107,0,0,2.35265819698172,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,1.05656061679314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0.11796972334774,0,0.115525666150338,0,0,0,0.376051641746286,0,0.781514011233092,7.07148075099841,0,5.61853127624772,0,0,0,0.0634158101939068,0,1.09651553371436,1.98484471355718,0,10.2209942111676,0,0,0,0.455324382702595,1.33053555243958,0,0,0.0679697329768317,0,0.827356886187777,1.4460082245969,2.04082041411336,0,0.280272163313789,5.47895232305697,0,0,0.500335809236594,0,0,0,0,0.207216164163037,0,0,1.29068207646083,0,0,0,0.4582137370881,0,0,0.111855431797792,3.23895770930302,5.24247077423759,0,0,0,0,1.63757624423474,0,0,1.35535298446752,0,0.754814217833368,0.771741581079447,0.655678681511872,0,0.245148321753905,2.82811856521951,0,0,0,0,0,0,0,3.39252483350749,0,4.49351653459342,14.6067277649303,1.37618785021362,0,0,0.0679914901909147,0,2.645134202577,0,0,0,0,0,0.126698501011437,0.305966489225945,0.534434810531121,0.459474497674225,1.0028301571695,0.227336094654718,0,0,0,2.98527574661373,5.71354635512977,0,0,0,0.190941474834495,0.202117188958219,0.217716747896961,0.684466602170562,2.28996980249598,16.9981626780643,5.98788641782824,0.325613074443898,0.106727345877715,0,0.269475606319761,0,0.733448665097199,1.62758471326295,0,0,0 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| ||
|short_description=p5@TMC5 | |||
}} | }} |
Latest revision as of 23:46, 24 September 2015
Short description: | p5@TMC5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TMC5_5end |
Coexpression cluster: | NA |
Association with transcript: | -66bp_to_ENST00000381414_5end |
EntrezGene: | TMC5 |
HGNC: | 22999 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 5.59e-07 | 7 |
germ cell | 5.59e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 2.70e-24 | 118 |
digestive system | 1.92e-20 | 145 |
digestive tract | 1.92e-20 | 145 |
primitive gut | 1.92e-20 | 145 |
endoderm-derived structure | 5.22e-20 | 160 |
endoderm | 5.22e-20 | 160 |
presumptive endoderm | 5.22e-20 | 160 |
larynx | 3.91e-19 | 9 |
foregut | 4.08e-19 | 87 |
respiratory primordium | 1.84e-18 | 38 |
endoderm of foregut | 1.84e-18 | 38 |
respiratory tract | 5.23e-15 | 54 |
respiratory system | 7.55e-15 | 74 |
upper respiratory tract | 1.37e-10 | 19 |
segment of respiratory tract | 1.89e-10 | 47 |
organ system subdivision | 2.17e-10 | 223 |
gastrointestinal system | 1.06e-09 | 25 |
biliary system | 7.48e-08 | 9 |
biliary tree | 7.48e-08 | 9 |
biliary bud | 7.48e-08 | 9 |
open tracheal system trachea | 1.29e-07 | 2 |
throat | 2.78e-07 | 2 |
intestine | 3.09e-07 | 17 |
primordium | 5.74e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.83e-14 | 106 |
cell type cancer | 1.60e-12 | 143 |
signet ring cell adenocarcinoma | 2.70e-07 | 2 |
cancer | 6.58e-07 | 235 |