FFCP PHASE1:Hg19::chr9:6565432..6565460,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2731 | |EntrezGene=2731 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4313 | |HGNC=4313 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-14bp_to_ENST00000460457_5end | |association_with_transcript=-14bp_to_ENST00000460457_5end | ||
|cluster_id=chr9:6565432..6565460,- | |||
|coexpression_cluster_id=C1144 | |||
|description=CAGE_peak_2_at_GLDC_5end | |description=CAGE_peak_2_at_GLDC_5end | ||
|id=chr9:6565432..6565460,- | |id=chr9:6565432..6565460,- | ||
|ontology_enrichment_celltype=CL:0000055!6.49e-27!180;CL:0000183!8.17e-24!59;CL:0000680!1.95e-23!57;CL:0000056!1.95e-23!57;CL:0000355!1.95e-23!57;CL:0000187!8.07e-21!54;CL:0000222!4.25e-20!119;CL:0000393!1.40e-17!60;CL:0000211!1.40e-17!60;CL:0000359!4.55e-16!32;CL:0002371!5.21e-16!591;CL:0000192!6.77e-14!42;CL:0000514!6.77e-14!42;CL:0000144!6.67e-13!625;CL:0000048!1.69e-12!430;CL:0002139!2.03e-12!24;CL:0000723!6.65e-12!436;CL:0000034!1.49e-11!444;CL:0000057!1.05e-09!75;CL:0002539!5.44e-09!10;CL:0000115!5.86e-09!35;CL:0000548!1.20e-08!679;CL:0000004!1.20e-08!679;CL:0000255!1.20e-08!679;CL:0000220!1.28e-08!246;CL:0002494!1.32e-08!16;CL:0000012!1.96e-08!682;CL:0002321!2.09e-08!248;CL:0000071!2.78e-08!18;CL:0002546!2.78e-08!18;CL:0000188!1.24e-07!9;CL:0002595!2.96e-07!5 | |ontology_enrichment_celltype=CL:0000055!6.49e-27!180;CL:0000183!8.17e-24!59;CL:0000680!1.95e-23!57;CL:0000056!1.95e-23!57;CL:0000355!1.95e-23!57;CL:0000187!8.07e-21!54;CL:0000222!4.25e-20!119;CL:0000393!1.40e-17!60;CL:0000211!1.40e-17!60;CL:0000359!4.55e-16!32;CL:0002371!5.21e-16!591;CL:0000192!6.77e-14!42;CL:0000514!6.77e-14!42;CL:0000144!6.67e-13!625;CL:0000048!1.69e-12!430;CL:0002139!2.03e-12!24;CL:0000723!6.65e-12!436;CL:0000034!1.49e-11!444;CL:0000057!1.05e-09!75;CL:0002539!5.44e-09!10;CL:0000115!5.86e-09!35;CL:0000548!1.20e-08!679;CL:0000004!1.20e-08!679;CL:0000255!1.20e-08!679;CL:0000220!1.28e-08!246;CL:0002494!1.32e-08!16;CL:0000012!1.96e-08!682;CL:0002321!2.09e-08!248;CL:0000071!2.78e-08!18;CL:0002546!2.78e-08!18;CL:0000188!1.24e-07!9;CL:0002595!2.96e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000569;3.82e-12;4!CL:0000359;1.21e-11;32!CL:0000708;4.77e-10;3!CL:0002144;5.29e-10;3!CL:0002582;1.15e-09;3!CL:0002564;1.51e-09;3!CL:0002595;2.89e-09;5!CL:0002139;3.26e-08;24!CL:0002494;4.68e-08;16!CL:0002138;6.23e-08;6!CL:0002575;2.31e-07;2!CL:0002549;2.77e-07;2!CL:0002593;7.44e-07;2!CL:0000192;8.66e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.20e-12,58;CL:0000056,1.20e-12,58;CL:0000355,1.20e-12,58;CL:0000569,2.79e-12,4;CL:0000011,2.79e-12,4;CL:0000359,4.42e-12,32;CL:0000187,5.31e-12,55;CL:0000222,4.34e-11,121;CL:0000393,2.13e-10,61;CL:0000211,2.13e-10,61;CL:0002144,4.38e-10,3;CL:0000708,5.25e-10,3;CL:0002582,1.14e-09,3;CL:0002564,1.20e-09,3;CL:0000192,1.33e-09,43;CL:0000514,1.33e-09,43;CL:0002595,2.22e-09,5;CL:0002139,2.96e-08,24;CL:0002494,3.13e-08,16;CL:0000048,4.49e-08,427;CL:0005020,6.38e-08,6;CL:0002138,6.38e-08,6;CL:0005022,6.38e-08,6;CL:0000723,8.68e-08,433;CL:0000034,2.03e-07,441;CL:0002575,2.32e-07,2;CL:0002549,2.78e-07,2;CL:0002602,5.73e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000011;3.82e-12;4!CL:0005022;6.23e-08;6!CL:0000355;1.23e-07;58!CL:0000514;8.66e-07;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!2.42e-29!79;UBERON:0007798!2.42e-29!79;UBERON:0000055!1.65e-27!69;UBERON:0004535!1.49e-26!110;UBERON:0000914!6.85e-26!83;UBERON:0002329!6.85e-26!83;UBERON:0003077!6.85e-26!83;UBERON:0003059!6.85e-26!83;UBERON:0007282!6.85e-26!83;UBERON:0009618!6.85e-26!83;UBERON:0007285!6.85e-26!83;UBERON:0001009!2.49e-25!113;UBERON:0004872!1.66e-24!84;UBERON:0004290!1.80e-24!70;UBERON:0001637!1.86e-22!42;UBERON:0003509!1.86e-22!42;UBERON:0004572!1.86e-22!42;UBERON:0001134!1.86e-22!61;UBERON:0002036!1.86e-22!61;UBERON:0003082!1.86e-22!61;UBERON:0001981!6.32e-22!60;UBERON:0007500!6.32e-22!60;UBERON:0004537!6.32e-22!60;UBERON:0006965!6.32e-22!60;UBERON:0002385!2.50e-21!63;UBERON:0001015!2.50e-21!63;UBERON:0000383!2.50e-21!63;UBERON:0004573!1.12e-19!33;UBERON:0004571!1.12e-19!33;UBERON:0000486!8.84e-19!82;UBERON:0003914!2.04e-14!118;UBERON:0000490!4.01e-12!138;UBERON:0000947!2.35e-11!21;UBERON:0010191!2.35e-11!21;UBERON:0005256!5.52e-11!143;UBERON:0004237!5.44e-09!10;UBERON:0004695!5.44e-09!10;UBERON:0002111!5.44e-09!10;UBERON:0004178!5.44e-09!10;UBERON:0001986!2.78e-08!18;UBERON:0004638!2.78e-08!18;UBERON:0004852!2.78e-08!18;UBERON:0001473!3.26e-08!8;UBERON:0004536!3.26e-08!8;UBERON:0006558!3.26e-08!8;UBERON:0000119!2.85e-07!312;UBERON:0003834!2.96e-07!5;UBERON:0001533!2.96e-07!5;UBERON:0002204!3.76e-07!167;UBERON:0000948!7.43e-07!24;UBERON:0005498!7.43e-07!24;UBERON:0004140!7.43e-07!24;UBERON:0009881!7.43e-07!24;UBERON:0004141!7.43e-07!24;UBERON:0003084!7.43e-07!24;UBERON:0007005!7.43e-07!24;UBERON:0004139!7.43e-07!24;UBERON:0004291!7.43e-07!24 | |ontology_enrichment_uberon=UBERON:0002049!2.42e-29!79;UBERON:0007798!2.42e-29!79;UBERON:0000055!1.65e-27!69;UBERON:0004535!1.49e-26!110;UBERON:0000914!6.85e-26!83;UBERON:0002329!6.85e-26!83;UBERON:0003077!6.85e-26!83;UBERON:0003059!6.85e-26!83;UBERON:0007282!6.85e-26!83;UBERON:0009618!6.85e-26!83;UBERON:0007285!6.85e-26!83;UBERON:0001009!2.49e-25!113;UBERON:0004872!1.66e-24!84;UBERON:0004290!1.80e-24!70;UBERON:0001637!1.86e-22!42;UBERON:0003509!1.86e-22!42;UBERON:0004572!1.86e-22!42;UBERON:0001134!1.86e-22!61;UBERON:0002036!1.86e-22!61;UBERON:0003082!1.86e-22!61;UBERON:0001981!6.32e-22!60;UBERON:0007500!6.32e-22!60;UBERON:0004537!6.32e-22!60;UBERON:0006965!6.32e-22!60;UBERON:0002385!2.50e-21!63;UBERON:0001015!2.50e-21!63;UBERON:0000383!2.50e-21!63;UBERON:0004573!1.12e-19!33;UBERON:0004571!1.12e-19!33;UBERON:0000486!8.84e-19!82;UBERON:0003914!2.04e-14!118;UBERON:0000490!4.01e-12!138;UBERON:0000947!2.35e-11!21;UBERON:0010191!2.35e-11!21;UBERON:0005256!5.52e-11!143;UBERON:0004237!5.44e-09!10;UBERON:0004695!5.44e-09!10;UBERON:0002111!5.44e-09!10;UBERON:0004178!5.44e-09!10;UBERON:0001986!2.78e-08!18;UBERON:0004638!2.78e-08!18;UBERON:0004852!2.78e-08!18;UBERON:0001473!3.26e-08!8;UBERON:0004536!3.26e-08!8;UBERON:0006558!3.26e-08!8;UBERON:0000119!2.85e-07!312;UBERON:0003834!2.96e-07!5;UBERON:0001533!2.96e-07!5;UBERON:0002204!3.76e-07!167;UBERON:0000948!7.43e-07!24;UBERON:0005498!7.43e-07!24;UBERON:0004140!7.43e-07!24;UBERON:0009881!7.43e-07!24;UBERON:0004141!7.43e-07!24;UBERON:0003084!7.43e-07!24;UBERON:0007005!7.43e-07!24;UBERON:0004139!7.43e-07!24;UBERON:0004291!7.43e-07!24 | ||
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|short_description=p2@GLDC | |short_description=p2@GLDC | ||
}} | }} |
Latest revision as of 14:53, 17 September 2015
Short description: | p2@GLDC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GLDC_5end |
Coexpression cluster: | C1144_Meningeal_Fibroblast_mesenchymal_ductal_Smooth_Preadipocyte_Pericytes |
Association with transcript: | -14bp_to_ENST00000460457_5end |
EntrezGene: | GLDC |
HGNC: | 4313 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.20e-12 | 58 |
myoblast | 1.20e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.20e-12 | 58 |
cardiac mesenchymal cell | 2.79e-12 | 4 |
migratory trunk neural crest cell | 2.79e-12 | 4 |
vascular associated smooth muscle cell | 4.42e-12 | 32 |
muscle cell | 5.31e-12 | 55 |
mesodermal cell | 4.34e-11 | 121 |
electrically responsive cell | 2.13e-10 | 61 |
electrically active cell | 2.13e-10 | 61 |
capillary endothelial cell | 4.38e-10 | 3 |
leptomeningeal cell | 5.25e-10 | 3 |
visceral preadipocyte | 1.14e-09 | 3 |
nucleus pulposus cell of intervertebral disc | 1.20e-09 | 3 |
smooth muscle cell | 1.33e-09 | 43 |
smooth muscle myoblast | 1.33e-09 | 43 |
smooth muscle cell of the subclavian artery | 2.22e-09 | 5 |
endothelial cell of vascular tree | 2.96e-08 | 24 |
cardiocyte | 3.13e-08 | 16 |
multi fate stem cell | 4.49e-08 | 427 |
lymphangioblast | 6.38e-08 | 6 |
endothelial cell of lymphatic vessel | 6.38e-08 | 6 |
vascular lymphangioblast | 6.38e-08 | 6 |
somatic stem cell | 8.68e-08 | 433 |
stem cell | 2.03e-07 | 441 |
central nervous system pericyte | 2.32e-07 | 2 |
fibroblast of choroid plexus | 2.78e-07 | 2 |
annulus pulposus cell | 5.73e-07 | 2 |