FFCP PHASE1:Hg19::chr17:4843875..4843941,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:4843875..4843941,+
|short_description=p1@RNF167
|description=CAGE_peak_1_at_RNF167_5end
|association_with_transcript=93bp_to_uc002fzu.2,uc002fzv.2_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26001 | |EntrezGene=26001 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24544 | |HGNC=24544 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=93bp_to_uc002fzu.2,uc002fzv.2_5end | |||
|cluster_id=chr17:4843875..4843941,+ | |||
|description=CAGE_peak_1_at_RNF167_5end | |||
|id=chr17:4843875..4843941,+ | |||
|ontology_enrichment_celltype=CL:0000220!1.13e-12!246;CL:0002321!2.93e-12!248;CL:0000066!7.93e-11!254;CL:0000222!8.70e-09!119;CL:0000055!3.62e-07!180;CL:0000325!9.75e-07!39 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.95e-12,250;CL:0000066,7.60e-11,253;CL:0000222,6.19e-09,121 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000477!1.85e-16!286;UBERON:0000481!1.86e-16!347;UBERON:0000475!3.68e-16!365;UBERON:0004111!1.70e-14!241;UBERON:0000468!1.95e-13!659;UBERON:0000119!3.95e-13!312;UBERON:0000483!8.06e-13!309;UBERON:0000923!5.54e-11!604;UBERON:0005291!5.54e-11!604;UBERON:0006598!5.54e-11!604;UBERON:0002532!5.54e-11!604;UBERON:0002050!6.22e-11!605;UBERON:0005423!6.22e-11!605;UBERON:0000025!9.44e-11!194;UBERON:0000922!1.10e-10!612;UBERON:0000064!1.11e-10!219;UBERON:0002100!1.10e-09!216;UBERON:0009569!1.11e-09!113;UBERON:0000467!1.19e-09!625;UBERON:0003104!1.38e-09!238;UBERON:0009142!1.38e-09!238;UBERON:0000480!1.95e-09!626;UBERON:0008947!2.83e-07!38;UBERON:0003258!2.83e-07!38;UBERON:0001637!4.38e-07!42;UBERON:0003509!4.38e-07!42;UBERON:0004572!4.38e-07!42;UBERON:0003914!4.58e-07!118;UBERON:0000063!6.67e-07!97;UBERON:0005256!8.58e-07!143;UBERON:0001737!8.99e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;8.86e-07;9!UBERON:0001557;8.86e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004111,1.04e-14,240;UBERON:0000119,1.31e-13,309;UBERON:0000483,2.71e-13,306;UBERON:0005423,4.41e-11,581;UBERON:0000025,9.46e-11,192;UBERON:0000922,4.23e-10,592;UBERON:0000923,4.34e-10,560;UBERON:0010316,4.34e-10,560;UBERON:0005291,4.34e-10,560;UBERON:0006598,4.34e-10,560;UBERON:0010317,4.34e-10,560;UBERON:0002532,4.34e-10,560;UBERON:0002050,5.37e-10,564;UBERON:0002100,2.33e-09,199;UBERON:0009569,2.41e-09,112;UBERON:0011216,4.04e-09,223;UBERON:0003104,2.56e-08,160;UBERON:0009142,2.56e-08,160;UBERON:0001048,5.78e-08,160;UBERON:0004119,1.63e-07,160;UBERON:0000925,1.63e-07,160;UBERON:0006595,1.63e-07,160;UBERON:0008947,2.83e-07,38;UBERON:0003258,2.83e-07,38;UBERON:0003914,4.21e-07,117;UBERON:0001637,4.38e-07,42;UBERON:0003509,4.38e-07,42;UBERON:0004572,4.38e-07,42;UBERON:0006554,6.42e-07,47;UBERON:0005256,7.60e-07,122;UBERON:0001008,8.88e-07,48;UBERON:0001737,8.99e-07,9 | |||
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| ||
|short_description=p1@RNF167 | |||
}} | }} |
Latest revision as of 01:58, 16 September 2015
Short description: | p1@RNF167 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RNF167_5end |
Coexpression cluster: | NA |
Association with transcript: | 93bp_to_uc002fzu.2, uc002fzv.2_5end |
EntrezGene: | RNF167 |
HGNC: | 24544 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.95e-12 | 250 |
epithelial cell | 7.60e-11 | 253 |
mesodermal cell | 6.19e-09 | 121 |
Ontology term | p-value | n |
---|---|---|
anatomical conduit | 1.04e-14 | 240 |
cell layer | 1.31e-13 | 309 |
epithelium | 2.71e-13 | 306 |
developing anatomical structure | 4.41e-11 | 581 |
tube | 9.46e-11 | 192 |
embryo | 4.23e-10 | 592 |
germ layer | 4.34e-10 | 560 |
germ layer / neural crest | 4.34e-10 | 560 |
embryonic tissue | 4.34e-10 | 560 |
presumptive structure | 4.34e-10 | 560 |
germ layer / neural crest derived structure | 4.34e-10 | 560 |
epiblast (generic) | 4.34e-10 | 560 |
embryonic structure | 5.37e-10 | 564 |
trunk | 2.33e-09 | 199 |
subdivision of trunk | 2.41e-09 | 112 |
organ system subdivision | 4.04e-09 | 223 |
mesenchyme | 2.56e-08 | 160 |
entire embryonic mesenchyme | 2.56e-08 | 160 |
primordium | 5.78e-08 | 160 |
endoderm-derived structure | 1.63e-07 | 160 |
endoderm | 1.63e-07 | 160 |
presumptive endoderm | 1.63e-07 | 160 |
respiratory primordium | 2.83e-07 | 38 |
endoderm of foregut | 2.83e-07 | 38 |
epithelial tube | 4.21e-07 | 117 |
artery | 4.38e-07 | 42 |
arterial blood vessel | 4.38e-07 | 42 |
arterial system | 4.38e-07 | 42 |
urinary system structure | 6.42e-07 | 47 |
trunk mesenchyme | 7.60e-07 | 122 |
renal system | 8.88e-07 | 48 |
larynx | 8.99e-07 | 9 |