FFCP PHASE1:Hg19::chr2:56150910..56150938,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2202 | |EntrezGene=2202 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3218 | |HGNC=3218 | ||
|TSSclassifier=strong | |||
|UniProt=Q12805,E9PGL6,C9J8S9,C9J4H7,B4DW75,C9JQX7,Q580Q6,C9JPZ9,C9J4J8,C9JUM4 | |UniProt=Q12805,E9PGL6,C9J8S9,C9J4H7,B4DW75,C9JQX7,Q580Q6,C9JPZ9,C9J4J8,C9JUM4 | ||
|association_with_transcript=0bp_to_ENST00000355426,ENST00000405693,ENST00000421664,ENST00000424207,ENST00000424836,ENST00000429909,ENST00000438672,ENST00000439193,ENST00000440439,ENST00000452161,ENST00000452337,ENST00000480016,ENST00000497698,uc002rzi.2,uc002rzj.2,uc010ypc.1_5end | |association_with_transcript=0bp_to_ENST00000355426,ENST00000405693,ENST00000421664,ENST00000424207,ENST00000424836,ENST00000429909,ENST00000438672,ENST00000439193,ENST00000440439,ENST00000452161,ENST00000452337,ENST00000480016,ENST00000497698,uc002rzi.2,uc002rzj.2,uc010ypc.1_5end | ||
|cluster_id=chr2:56150910..56150938,- | |||
|coexpression_cluster_id=C395 | |||
|description=CAGE_peak_1_at_EFEMP1_5end | |description=CAGE_peak_1_at_EFEMP1_5end | ||
|id=chr2:56150910..56150938,- | |id=chr2:56150910..56150938,- | ||
|ontology_enrichment_celltype=CL:0000222!6.89e-28!119;CL:0000055!3.76e-18!180;CL:0000213!2.29e-17!57;CL:0000215!2.29e-17!57;CL:0002139!4.96e-16!24;CL:0000220!9.79e-16!246;CL:0002321!2.21e-15!248;CL:0002078!8.71e-14!44;CL:0000115!1.90e-12!35;CL:0000071!3.61e-12!18;CL:0002546!3.61e-12!18;CL:0000057!5.19e-12!75;CL:0000076!1.79e-11!62;CL:0000187!2.75e-11!54;CL:0000680!7.32e-11!57;CL:0000056!7.32e-11!57;CL:0000355!7.32e-11!57;CL:0000183!3.19e-10!59;CL:0000359!4.10e-10!32;CL:0000192!6.16e-10!42;CL:0000514!6.16e-10!42;CL:0000393!1.58e-09!60;CL:0000211!1.58e-09!60;CL:0002494!3.92e-08!16;CL:1000413!6.56e-07!9 | |ontology_enrichment_celltype=CL:0000222!6.89e-28!119;CL:0000055!3.76e-18!180;CL:0000213!2.29e-17!57;CL:0000215!2.29e-17!57;CL:0002139!4.96e-16!24;CL:0000220!9.79e-16!246;CL:0002321!2.21e-15!248;CL:0002078!8.71e-14!44;CL:0000115!1.90e-12!35;CL:0000071!3.61e-12!18;CL:0002546!3.61e-12!18;CL:0000057!5.19e-12!75;CL:0000076!1.79e-11!62;CL:0000187!2.75e-11!54;CL:0000680!7.32e-11!57;CL:0000056!7.32e-11!57;CL:0000355!7.32e-11!57;CL:0000183!3.19e-10!59;CL:0000359!4.10e-10!32;CL:0000192!6.16e-10!42;CL:0000514!6.16e-10!42;CL:0000393!1.58e-09!60;CL:0000211!1.58e-09!60;CL:0002494!3.92e-08!16;CL:1000413!6.56e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002139;3.65e-16;24!CL:0000071;2.89e-12;18!CL:0000115;6.65e-11;36!CL:0000213;3.94e-10;58!CL:0000215;3.94e-10;58!CL:0002078;5.08e-10;45!CL:0000359;1.32e-09;32!CL:0002494;3.43e-08;16!CL:0000192;6.53e-08;43!CL:1000413;5.86e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.18e-28,121;CL:0000213,1.36e-17,58;CL:0000215,1.36e-17,58;CL:0002139,3.66e-16,24;CL:0002321,3.93e-15,250;CL:0002078,3.09e-14,45;CL:0000115,6.97e-13,36;CL:0000071,2.89e-12,18;CL:0002546,2.89e-12,18;CL:0000057,3.60e-12,76;CL:0000187,1.02e-11,55;CL:0000076,2.65e-11,63;CL:0000680,2.78e-11,58;CL:0000056,2.78e-11,58;CL:0000355,2.78e-11,58;CL:0000192,2.34e-10,43;CL:0000514,2.34e-10,43;CL:0000359,3.43e-10,32;CL:0000393,6.44e-10,61;CL:0000211,6.44e-10,61;CL:0002494,3.41e-08,16;CL:1000413,5.86e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002546;2.89e-12;18!CL:0000222;2.35e-08;121!CL:0000514;6.53e-08;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!3.87e-30!84;UBERON:0000477!1.30e-29!286;UBERON:0002049!5.09e-29!79;UBERON:0007798!5.09e-29!79;UBERON:0000055!1.77e-26!69;UBERON:0004111!7.11e-26!241;UBERON:0001981!3.36e-24!60;UBERON:0007500!3.36e-24!60;UBERON:0004537!3.36e-24!60;UBERON:0006965!3.36e-24!60;UBERON:0003914!4.78e-24!118;UBERON:0000483!5.18e-24!309;UBERON:0000119!1.37e-23!312;UBERON:0001009!7.08e-23!113;UBERON:0004535!9.60e-23!110;UBERON:0000025!8.60e-21!194;UBERON:0000475!1.87e-18!365;UBERON:0000468!2.49e-18!659;UBERON:0001637!3.13e-17!42;UBERON:0003509!3.13e-17!42;UBERON:0004572!3.13e-17!42;UBERON:0000490!1.03e-16!138;UBERON:0000467!5.65e-15!625;UBERON:0000480!1.10e-14!626;UBERON:0000481!7.87e-14!347;UBERON:0004573!1.48e-13!33;UBERON:0004571!1.48e-13!33;UBERON:0006914!3.55e-12!25;UBERON:0001986!3.61e-12!18;UBERON:0004638!3.61e-12!18;UBERON:0004852!3.61e-12!18;UBERON:0000487!5.29e-11!22;UBERON:0002385!1.56e-10!63;UBERON:0001015!1.56e-10!63;UBERON:0000383!1.56e-10!63;UBERON:0001134!2.25e-10!61;UBERON:0002036!2.25e-10!61;UBERON:0003082!2.25e-10!61;UBERON:0000948!9.23e-10!24;UBERON:0005498!9.23e-10!24;UBERON:0004140!9.23e-10!24;UBERON:0009881!9.23e-10!24;UBERON:0004141!9.23e-10!24;UBERON:0003084!9.23e-10!24;UBERON:0007005!9.23e-10!24;UBERON:0004139!9.23e-10!24;UBERON:0004291!9.23e-10!24;UBERON:0007100!1.31e-09!27;UBERON:0000947!1.33e-09!21;UBERON:0010191!1.33e-09!21;UBERON:0005256!1.37e-09!143;UBERON:0002100!1.45e-09!216;UBERON:0000486!1.60e-09!82;UBERON:0000914!2.82e-08!83;UBERON:0002329!2.82e-08!83;UBERON:0003077!2.82e-08!83;UBERON:0003059!2.82e-08!83;UBERON:0007282!2.82e-08!83;UBERON:0009618!2.82e-08!83;UBERON:0007285!2.82e-08!83;UBERON:0004290!2.98e-08!70;UBERON:0000064!1.02e-07!219;UBERON:0000923!1.64e-07!604;UBERON:0005291!1.64e-07!604;UBERON:0006598!1.64e-07!604;UBERON:0002532!1.64e-07!604;UBERON:0002050!1.67e-07!605;UBERON:0005423!1.67e-07!605;UBERON:0000922!2.25e-07!612;UBERON:0003103!4.18e-07!69;UBERON:0003915!6.56e-07!9;UBERON:0004700!6.56e-07!9;UBERON:0001917!6.56e-07!9 | |ontology_enrichment_uberon=UBERON:0004872!3.87e-30!84;UBERON:0000477!1.30e-29!286;UBERON:0002049!5.09e-29!79;UBERON:0007798!5.09e-29!79;UBERON:0000055!1.77e-26!69;UBERON:0004111!7.11e-26!241;UBERON:0001981!3.36e-24!60;UBERON:0007500!3.36e-24!60;UBERON:0004537!3.36e-24!60;UBERON:0006965!3.36e-24!60;UBERON:0003914!4.78e-24!118;UBERON:0000483!5.18e-24!309;UBERON:0000119!1.37e-23!312;UBERON:0001009!7.08e-23!113;UBERON:0004535!9.60e-23!110;UBERON:0000025!8.60e-21!194;UBERON:0000475!1.87e-18!365;UBERON:0000468!2.49e-18!659;UBERON:0001637!3.13e-17!42;UBERON:0003509!3.13e-17!42;UBERON:0004572!3.13e-17!42;UBERON:0000490!1.03e-16!138;UBERON:0000467!5.65e-15!625;UBERON:0000480!1.10e-14!626;UBERON:0000481!7.87e-14!347;UBERON:0004573!1.48e-13!33;UBERON:0004571!1.48e-13!33;UBERON:0006914!3.55e-12!25;UBERON:0001986!3.61e-12!18;UBERON:0004638!3.61e-12!18;UBERON:0004852!3.61e-12!18;UBERON:0000487!5.29e-11!22;UBERON:0002385!1.56e-10!63;UBERON:0001015!1.56e-10!63;UBERON:0000383!1.56e-10!63;UBERON:0001134!2.25e-10!61;UBERON:0002036!2.25e-10!61;UBERON:0003082!2.25e-10!61;UBERON:0000948!9.23e-10!24;UBERON:0005498!9.23e-10!24;UBERON:0004140!9.23e-10!24;UBERON:0009881!9.23e-10!24;UBERON:0004141!9.23e-10!24;UBERON:0003084!9.23e-10!24;UBERON:0007005!9.23e-10!24;UBERON:0004139!9.23e-10!24;UBERON:0004291!9.23e-10!24;UBERON:0007100!1.31e-09!27;UBERON:0000947!1.33e-09!21;UBERON:0010191!1.33e-09!21;UBERON:0005256!1.37e-09!143;UBERON:0002100!1.45e-09!216;UBERON:0000486!1.60e-09!82;UBERON:0000914!2.82e-08!83;UBERON:0002329!2.82e-08!83;UBERON:0003077!2.82e-08!83;UBERON:0003059!2.82e-08!83;UBERON:0007282!2.82e-08!83;UBERON:0009618!2.82e-08!83;UBERON:0007285!2.82e-08!83;UBERON:0004290!2.98e-08!70;UBERON:0000064!1.02e-07!219;UBERON:0000923!1.64e-07!604;UBERON:0005291!1.64e-07!604;UBERON:0006598!1.64e-07!604;UBERON:0002532!1.64e-07!604;UBERON:0002050!1.67e-07!605;UBERON:0005423!1.67e-07!605;UBERON:0000922!2.25e-07!612;UBERON:0003103!4.18e-07!69;UBERON:0003915!6.56e-07!9;UBERON:0004700!6.56e-07!9;UBERON:0001917!6.56e-07!9 | ||
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|phase1_expression=989.05709674891,553.021653210409,1058.28566595255,652.47790526241,838.499013145592,1849.35767109278,159.578923246036,112.446137469976,365.398693851574,27.522200888169,60.0109004456288,60.2898187079275,46.6867551464363,140.351044256693,310.519341057057,241.364727576187,247.104756489831,251.956981183644,241.03880260251,33.8582909711167,53.4481811059943,36.6742024129363,38.6418582626927,27.6486338647226,42.0567842642589,1.68109492645493,1.31360943119913,1.73163718890094,0,0,4.02521920621798,93.7809648968506,92.1690111461445,129.413903558376,0,0,0,22.1598163412751,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.65939452896706,0,0,0,0,0,0,0,0,0,0,0,0,0,2.66852776159066,0,0,0,0,0,0,0,0,0,0,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,4715.22479451202,551.986807536093,1780.74189879485,2681.15563238871,2495.15878123482,3016.57360387811,248.924501426994,657.930344649164,126.109446096867,152.549825454244,255.511391581304,56.5829606150119,43.3511393068125,41.8986420346405,0,0.174129737299267,0.132957960518865,0,0,0,972.743221652655,1190.56467962688,1139.31512627612,1872.86521159424,1352.04668290453,1073.2354816082,1171.62578240536,1326.194808057,1360.45018851398,3360.92967277005,1446.56007773895,1877.87210112473,1849.50227210003,1538.66999124746,1489.04090020667,1890.8324466871,1454.05221712708,1585.79486816614,846.307838811676,597.088099868353,803.889252366627,0,0,72.3916126556607,829.446187379487,1339.62418289959,741.888640096465,4345.28796772378,639.112424721439,1048.46711226611,319.179497231818,479.028379026125,1811.24822602664,722.049202293528,928.136685878219,464.667302869939,296.730601107199,25.5410360698838,12.1742429963825,205.940327577546,9.41526687476347,2.81842796745036,2.26622122115384,2.66856532734272,11.432633590274,7.37005903870608,32.2376437268388,10.6920257155385,51.4315212899398,42.7775840110872,39.5239977998931,4.20840284885166,6.00568895385428,6.37247465613621,27.216612494612,80.2998024993431,125.899493363728,1005.23600716411,1113.83024799214,2023.88337383356,1306.5601706487,590.879368190188,946.6405335843,155.357245647514,102.550387838706,280.843816849467,499.656962466627,790.875014706811,1329.29258629344,1572.4928407334,1038.75806770361,397.769283802724,111.570869740301,38.0723880731695,64.368084459437,64.2442293671369,1.95157929807353,3.84336328132307,3.71820617182459,5.28671380578389,2.01856680700503,1.09493207722749,0,18.6539872075937,1.38134921352481,104.482783807195,86.6255378003503,47.7959472160969,50.2382376432743,44.3460294985607,48.6396419749857,44.4474065948509,41.0478171062197,50.4269092519015,47.8780374905844,28.0865424570865,35.4314618219831,151.461115707721,263.407367252096,199.931847484337,1.26755034821831,0.982827216677626,23.6315962672562,0,0,194.557896878528,55.5336444167645,15.7362454560667,26.4391197442589,113.606022209516,17.9194567920679,17.6788913497528,203.507192255635,45.21285794028,763.978373392492,1717.09452967021,1794.06886123437,2317.29557421741,18.1747011530633,18.0282094039923,0,0,0,74.0497288495538,209.641695992177,25.0941922119024,107.380668720715,79.6336991528256,115.014803749563,0,0,1.03664057770386,0.576479813667846,1.13618190083742,0.380987365753014,0,0,107.775640994304,0,0,0.571652865261156,2.91540819297938,25.7216440611635,6.23375429478075,100.702666575309,96.5672403800083,34.657412854796,2.92531928243358,0,9.7738802219614,4.25547396069835,9.85762062359568,1041.16574981863,219.761750183534,136.657895905608,35.5052440880171,939.656312475291,196.40406448749,28.9381801977203,24.4029368408082,114.269128921091,0,0,0,54.8740919075724,96.4840261006557,2.85273810081437,40.8283284802573,31.2324010276583,31.6937904934615,0,0,0,0.385029108839245,4.06551398755941,0,3.86644406388848,20.4369843707906,3.82763250991898,0,0,0,353.228804659404,256.587477303614,123.42558578338,426.548236999685,106.343677323108,331.648178816365,578.795731478996,299.140423129353,229.681579096545,155.209606938757,133.509345305623,48.8578296635513,176.373737370208,5.48243240895674,1.71571711905428,0,0,0.213455115606889,49.7129217171865,139.805769188818,111.582018238652,1038.08306791376,1350.77228888153,724.383703731763,765.631416802813,722.530635682185,528.083423114463,1000.33776783924,5.5515489768956,79.1925294896547,13.5509807422785,11.9428518712233,12.4345104952156,0,149.778333316554,60.1288857751403,181.292013651914,10.5612877443896,64.3820877450772,24.8159787099077,24.875953884726,5.49044838423799,4.38417673959782,19.1048448296105,453.796202442877,192.035793257186,1267.85825935176,1181.38075560762,8.39933956385944,6.52196706011309,26.507132396684,47.3713325089373,9.17886494360931,0,0,45.3916721456009,175.159820803643,367.352207575998,236.685203754818,0.366277859273374,0.247528499761764,59.7236159516019,53.3049401749947,1635.76240581354,21.4608994608511,95.2020453768502,137.846299904064,17.2295715605663,292.827587510914,173.729999309246,44.3178462563725,126.603554689661,258.34032270920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| ||
|short_description=p1@EFEMP1 | |short_description=p1@EFEMP1 | ||
}} | }} |
Latest revision as of 18:22, 17 September 2015
Short description: | p1@EFEMP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_EFEMP1_5end |
Coexpression cluster: | C395_Synoviocyte_Cardiac_Fibroblast_mesothelioma_Endothelial_Chondrocyte_tenocyte |
Association with transcript: | 0bp_to_ENST00000355426, ENST00000405693, ENST00000421664, ENST00000424207, ENST00000424836, ENST00000429909, ENST00000438672, ENST00000439193, ENST00000440439, ENST00000452161, ENST00000452337, ENST00000480016, ENST00000497698, uc002rzi.2, uc002rzj.2, uc010ypc.1_5end |
EntrezGene: | EFEMP1 |
HGNC: | 3218 |
UniProt: | Q12805E9PGL6C9J8S9C9J4H7B4DW75C9JQX7Q580Q6C9JPZ9C9J4J8C9JUM4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.18e-28 | 121 |
lining cell | 1.36e-17 | 58 |
barrier cell | 1.36e-17 | 58 |
endothelial cell of vascular tree | 3.66e-16 | 24 |
embryonic cell | 3.93e-15 | 250 |
meso-epithelial cell | 3.09e-14 | 45 |
endothelial cell | 6.97e-13 | 36 |
blood vessel endothelial cell | 2.89e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.89e-12 | 18 |
fibroblast | 3.60e-12 | 76 |
muscle cell | 1.02e-11 | 55 |
squamous epithelial cell | 2.65e-11 | 63 |
muscle precursor cell | 2.78e-11 | 58 |
myoblast | 2.78e-11 | 58 |
multi-potent skeletal muscle stem cell | 2.78e-11 | 58 |
smooth muscle cell | 2.34e-10 | 43 |
smooth muscle myoblast | 2.34e-10 | 43 |
vascular associated smooth muscle cell | 3.43e-10 | 32 |
electrically responsive cell | 6.44e-10 | 61 |
electrically active cell | 6.44e-10 | 61 |
cardiocyte | 3.41e-08 | 16 |
endothelial cell of artery | 5.86e-07 | 9 |