FFCP PHASE1:Hg19::chr12:66218904..66218913,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8091 | |EntrezGene=8091 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5009 | |HGNC=5009 | ||
|TSSclassifier=strong | |||
|UniProt=F5H2A4 | |UniProt=F5H2A4 | ||
|association_with_transcript=1bp_to_ENST00000393577_5end | |association_with_transcript=1bp_to_ENST00000393577_5end | ||
|cluster_id=chr12:66218904..66218913,+ | |||
|coexpression_cluster_id=C1682 | |coexpression_cluster_id=C1682 | ||
|description=CAGE_peak_11_at_HMGA2_5end | |description=CAGE_peak_11_at_HMGA2_5end | ||
|id=chr12:66218904..66218913,+ | |id=chr12:66218904..66218913,+ | ||
|ontology_enrichment_celltype=CL:0000055!7.70e-33!180;CL:0002321!1.93e-27!248;CL:0000220!2.27e-27!246;CL:0000680!2.73e-26!57;CL:0000056!2.73e-26!57;CL:0000355!2.73e-26!57;CL:0000187!2.46e-24!54;CL:0000183!4.12e-24!59;CL:0000393!1.37e-23!60;CL:0000211!1.37e-23!60;CL:0000192!7.91e-23!42;CL:0000514!7.91e-23!42;CL:0000222!5.90e-21!119;CL:0000012!1.66e-20!682;CL:0000548!4.15e-20!679;CL:0000004!4.15e-20!679;CL:0000255!4.15e-20!679;CL:0002371!4.59e-20!591;CL:0000359!2.33e-19!32;CL:0000144!1.23e-18!625;CL:0000003!1.03e-12!722;CL:0000057!1.88e-11!75;CL:0002539!3.19e-08!10 | |ontology_enrichment_celltype=CL:0000055!7.70e-33!180;CL:0002321!1.93e-27!248;CL:0000220!2.27e-27!246;CL:0000680!2.73e-26!57;CL:0000056!2.73e-26!57;CL:0000355!2.73e-26!57;CL:0000187!2.46e-24!54;CL:0000183!4.12e-24!59;CL:0000393!1.37e-23!60;CL:0000211!1.37e-23!60;CL:0000192!7.91e-23!42;CL:0000514!7.91e-23!42;CL:0000222!5.90e-21!119;CL:0000012!1.66e-20!682;CL:0000548!4.15e-20!679;CL:0000004!4.15e-20!679;CL:0000255!4.15e-20!679;CL:0002371!4.59e-20!591;CL:0000359!2.33e-19!32;CL:0000144!1.23e-18!625;CL:0000003!1.03e-12!722;CL:0000057!1.88e-11!75;CL:0002539!3.19e-08!10 | ||
|ontology_enrichment_celltype_v019=CL:0000359;2.88e-24;32!CL:0000192;4.09e-20;43!CL:0000187;1.34e-14;55!CL:0000393;4.68e-11;61!CL:0000211;4.68e-11;61!CL:0002539;1.31e-10;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,2.58e-30,58;CL:0000056,2.58e-30,58;CL:0000355,2.58e-30,58;CL:0000192,2.28e-28,43;CL:0000514,2.28e-28,43;CL:0000187,9.98e-28,55;CL:0000359,5.14e-26,32;CL:0000393,2.14e-24,61;CL:0000211,2.14e-24,61;CL:0000222,3.72e-18,121;CL:0002321,6.99e-16,250;CL:0002539,1.04e-10,10;CL:0000057,8.51e-07,76;CL:0000723,9.46e-07,433 | |||
|ontology_enrichment_development_v019=CL:0000514;4.09e-20;43!CL:0000355;2.35e-15;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;8.24e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.03e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!4.95e-27!83;UBERON:0002329!4.95e-27!83;UBERON:0003077!4.95e-27!83;UBERON:0003059!4.95e-27!83;UBERON:0007282!4.95e-27!83;UBERON:0009618!4.95e-27!83;UBERON:0007285!4.95e-27!83;UBERON:0000486!1.27e-25!82;UBERON:0004290!4.06e-24!70;UBERON:0001134!9.41e-23!61;UBERON:0002036!9.41e-23!61;UBERON:0003082!9.41e-23!61;UBERON:0002049!2.22e-21!79;UBERON:0007798!2.22e-21!79;UBERON:0002385!3.53e-21!63;UBERON:0001015!3.53e-21!63;UBERON:0000383!3.53e-21!63;UBERON:0001637!7.97e-21!42;UBERON:0003509!7.97e-21!42;UBERON:0004572!7.97e-21!42;UBERON:0005256!4.67e-20!143;UBERON:0001981!6.85e-19!60;UBERON:0007500!6.85e-19!60;UBERON:0004537!6.85e-19!60;UBERON:0006965!6.85e-19!60;UBERON:0000490!6.35e-18!138;UBERON:0000055!9.26e-18!69;UBERON:0004573!1.54e-16!33;UBERON:0004571!1.54e-16!33;UBERON:0003914!1.69e-16!118;UBERON:0004872!5.65e-16!84;UBERON:0004535!4.45e-15!110;UBERON:0002100!6.51e-15!216;UBERON:0001009!6.88e-14!113;UBERON:0003104!3.24e-12!238;UBERON:0009142!3.24e-12!238;UBERON:0000119!3.67e-11!312;UBERON:0000483!1.09e-10!309;UBERON:0000475!1.21e-10!365;UBERON:0000947!2.85e-10!21;UBERON:0010191!2.85e-10!21;UBERON:0000481!2.69e-09!347;UBERON:0004237!3.19e-08!10;UBERON:0004695!3.19e-08!10;UBERON:0002111!3.19e-08!10;UBERON:0004178!3.19e-08!10;UBERON:0003102!3.23e-08!95;UBERON:0000926!2.56e-07!448;UBERON:0004120!2.56e-07!448;UBERON:0006603!2.56e-07!448;UBERON:0000468!3.01e-07!659;UBERON:0001135!7.13e-07!15;UBERON:0000467!8.53e-07!625 | |ontology_enrichment_uberon=UBERON:0000914!4.95e-27!83;UBERON:0002329!4.95e-27!83;UBERON:0003077!4.95e-27!83;UBERON:0003059!4.95e-27!83;UBERON:0007282!4.95e-27!83;UBERON:0009618!4.95e-27!83;UBERON:0007285!4.95e-27!83;UBERON:0000486!1.27e-25!82;UBERON:0004290!4.06e-24!70;UBERON:0001134!9.41e-23!61;UBERON:0002036!9.41e-23!61;UBERON:0003082!9.41e-23!61;UBERON:0002049!2.22e-21!79;UBERON:0007798!2.22e-21!79;UBERON:0002385!3.53e-21!63;UBERON:0001015!3.53e-21!63;UBERON:0000383!3.53e-21!63;UBERON:0001637!7.97e-21!42;UBERON:0003509!7.97e-21!42;UBERON:0004572!7.97e-21!42;UBERON:0005256!4.67e-20!143;UBERON:0001981!6.85e-19!60;UBERON:0007500!6.85e-19!60;UBERON:0004537!6.85e-19!60;UBERON:0006965!6.85e-19!60;UBERON:0000490!6.35e-18!138;UBERON:0000055!9.26e-18!69;UBERON:0004573!1.54e-16!33;UBERON:0004571!1.54e-16!33;UBERON:0003914!1.69e-16!118;UBERON:0004872!5.65e-16!84;UBERON:0004535!4.45e-15!110;UBERON:0002100!6.51e-15!216;UBERON:0001009!6.88e-14!113;UBERON:0003104!3.24e-12!238;UBERON:0009142!3.24e-12!238;UBERON:0000119!3.67e-11!312;UBERON:0000483!1.09e-10!309;UBERON:0000475!1.21e-10!365;UBERON:0000947!2.85e-10!21;UBERON:0010191!2.85e-10!21;UBERON:0000481!2.69e-09!347;UBERON:0004237!3.19e-08!10;UBERON:0004695!3.19e-08!10;UBERON:0002111!3.19e-08!10;UBERON:0004178!3.19e-08!10;UBERON:0003102!3.23e-08!95;UBERON:0000926!2.56e-07!448;UBERON:0004120!2.56e-07!448;UBERON:0006603!2.56e-07!448;UBERON:0000468!3.01e-07!659;UBERON:0001135!7.13e-07!15;UBERON:0000467!8.53e-07!625 | ||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.89e-17;42!UBERON:0003509;1.89e-17;42!UBERON:0004572;1.89e-17;42!UBERON:0004573;2.29e-17;33!UBERON:0004571;2.29e-17;33!UBERON:0007500;2.02e-13;56!UBERON:0001981;2.02e-13;56!UBERON:0004537;2.02e-13;56!UBERON:0000947;7.36e-11;21!UBERON:0010191;7.36e-11;21!UBERON:0004237;1.31e-10;10!UBERON:0004695;1.31e-10;10!UBERON:0002111;1.31e-10;10!UBERON:0004178;1.31e-10;10!UBERON:0000055;3.60e-10;65!UBERON:0002385;4.71e-10;31!UBERON:0001015;4.71e-10;31!UBERON:0000383;4.71e-10;31!UBERON:0002049;5.67e-10;75!UBERON:0007798;5.67e-10;75!UBERON:0003914;1.16e-09;74!UBERON:0001135;2.14e-08;15!UBERON:0004765;3.16e-08;26!UBERON:0010260;1.00e-07;9 | |||
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| ||
|short_description=p11@HMGA2 | |short_description=p11@HMGA2 | ||
}} | }} |
Latest revision as of 23:29, 19 September 2015
Short description: | p11@HMGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_HMGA2_5end |
Coexpression cluster: | C1682_schwannoma_Fibroblast_hepatoblastoma_Wilms_adrenal_Aortic_meningioma |
Association with transcript: | 1bp_to_ENST00000393577_5end |
EntrezGene: | HMGA2 |
HGNC: | 5009 |
UniProt: | F5H2A4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 2.58e-30 | 58 |
myoblast | 2.58e-30 | 58 |
multi-potent skeletal muscle stem cell | 2.58e-30 | 58 |
smooth muscle cell | 2.28e-28 | 43 |
smooth muscle myoblast | 2.28e-28 | 43 |
muscle cell | 9.98e-28 | 55 |
vascular associated smooth muscle cell | 5.14e-26 | 32 |
electrically responsive cell | 2.14e-24 | 61 |
electrically active cell | 2.14e-24 | 61 |
mesodermal cell | 3.72e-18 | 121 |
embryonic cell | 6.99e-16 | 250 |
aortic smooth muscle cell | 1.04e-10 | 10 |
fibroblast | 8.51e-07 | 76 |
somatic stem cell | 9.46e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.03e-08 | 14 |