FFCP PHASE1:Hg19::chr18:12884150..12884250,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr18:12884150..12884250,-
|short_description=p1@PTPN2
|description=CAGE_peak_1_at_PTPN2_5end
|association_with_transcript=0bp_to_ENST00000309660,ENST0000035331...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5771 | |EntrezGene=5771 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9650 | |HGNC=9650 | ||
|TSSclassifier=strong | |||
|UniProt=P17706,Q96AU5 | |UniProt=P17706,Q96AU5 | ||
|association_with_transcript=0bp_to_ENST00000309660,ENST00000353319_5end | |||
|cluster_id=chr18:12884150..12884250,- | |||
|description=CAGE_peak_1_at_PTPN2_5end | |||
|id=chr18:12884150..12884250,- | |||
|ontology_enrichment_celltype=CL:0000037!1.57e-50!172;CL:0000566!1.57e-50!172;CL:0002032!1.69e-46!165;CL:0000837!1.69e-46!165;CL:0000738!6.42e-46!140;CL:0000988!1.18e-45!182;CL:0002087!1.59e-39!119;CL:0002031!3.49e-36!124;CL:0000763!4.41e-24!112;CL:0000049!4.41e-24!112;CL:0000542!4.76e-21!53;CL:0000051!4.76e-21!53;CL:0000838!1.48e-20!52;CL:0000766!3.05e-19!76;CL:0000860!4.92e-19!45;CL:0002057!2.20e-18!42;CL:0002009!3.18e-17!65;CL:0000557!5.85e-17!71;CL:0002194!1.31e-16!63;CL:0000576!1.31e-16!63;CL:0000040!1.31e-16!63;CL:0000559!1.31e-16!63;CL:0000839!3.66e-15!70;CL:0000945!5.27e-12!24;CL:0000826!5.27e-12!24;CL:0000084!1.28e-08!25;CL:0000827!1.28e-08!25;CL:0000236!6.43e-08!14 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.84e-12;33!CL:0002057;1.84e-12;33!CL:0000542;2.32e-12;53!CL:0000945;4.94e-12;24!CL:0000576;5.31e-12;48!CL:0002087;5.71e-12;104!CL:0000738;3.52e-10;136!CL:0000473;2.40e-09;39!CL:0000234;2.40e-09;39!CL:0000084;1.09e-08;25!CL:0000766;1.21e-08;69!CL:0000988;1.83e-08;177!CL:0000236;2.21e-07;13!CL:0000763;4.06e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.49e-50,168;CL:0000988,2.37e-46,177;CL:0002032,2.66e-46,161;CL:0000837,2.66e-46,161;CL:0000738,7.53e-46,136;CL:0002087,1.62e-39,115;CL:0002031,4.26e-36,120;CL:0000763,6.61e-24,108;CL:0000049,6.61e-24,108;CL:0000542,4.76e-21,53;CL:0000051,4.76e-21,53;CL:0000838,1.48e-20,52;CL:0000766,3.54e-19,72;CL:0000860,2.20e-18,42;CL:0002057,2.20e-18,42;CL:0002009,3.41e-17,61;CL:0000557,7.08e-17,67;CL:0002194,1.41e-16,59;CL:0000576,1.41e-16,59;CL:0000040,1.41e-16,59;CL:0000559,1.41e-16,59;CL:0000473,3.43e-16,48;CL:0000234,3.43e-16,48;CL:0000839,4.81e-15,66;CL:0000945,5.27e-12,24;CL:0000826,5.27e-12,24;CL:0000084,1.28e-08,25;CL:0000827,1.28e-08,25;CL:0000236,6.43e-08,14 | |||
|ontology_enrichment_development_v019=CL:0002057;1.73e-13;42!CL:0000051;2.32e-12;53!CL:0000049;2.08e-07;108 | |||
|ontology_enrichment_disease=DOID:162!5.42e-10!235;DOID:2531!9.26e-10!51;DOID:0060083!9.26e-10!51;DOID:14566!3.74e-09!239;DOID:305!6.62e-08!106;DOID:1240!6.06e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,5.42e-10,235;DOID:2531,9.26e-10,51;DOID:0060083,9.26e-10,51;DOID:14566,3.74e-09,239;DOID:305,6.62e-08,106;DOID:1240,6.06e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0002390!6.22e-19!102;UBERON:0003061!6.22e-19!102;UBERON:0002193!2.05e-15!112;UBERON:0002371!2.00e-14!80;UBERON:0001474!7.62e-13!86;UBERON:0004765!8.50e-11!101;UBERON:0001434!8.50e-11!101;UBERON:0002405!1.57e-10!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.81e-19,98;UBERON:0003061,9.81e-19,98;UBERON:0002193,3.68e-15,108;UBERON:0002371,3.03e-14,76;UBERON:0001474,1.27e-12,82;UBERON:0002405,3.37e-12,93;UBERON:0004765,7.14e-12,90;UBERON:0001434,1.85e-10,100 | |||
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| ||
|short_description=p1@PTPN2 | |||
}} | }} |
Latest revision as of 20:18, 18 September 2015
Short description: | p1@PTPN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PTPN2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000309660, ENST00000353319_5end |
EntrezGene: | PTPN2 |
HGNC: | 9650 |
UniProt: | P17706Q96AU5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.49e-50 | 168 |
hematopoietic cell | 2.37e-46 | 177 |
hematopoietic oligopotent progenitor cell | 2.66e-46 | 161 |
hematopoietic multipotent progenitor cell | 2.66e-46 | 161 |
leukocyte | 7.53e-46 | 136 |
nongranular leukocyte | 1.62e-39 | 115 |
hematopoietic lineage restricted progenitor cell | 4.26e-36 | 120 |
myeloid cell | 6.61e-24 | 108 |
common myeloid progenitor | 6.61e-24 | 108 |
lymphocyte | 4.76e-21 | 53 |
common lymphoid progenitor | 4.76e-21 | 53 |
lymphoid lineage restricted progenitor cell | 1.48e-20 | 52 |
myeloid leukocyte | 3.54e-19 | 72 |
classical monocyte | 2.20e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.20e-18 | 42 |
macrophage dendritic cell progenitor | 3.41e-17 | 61 |
granulocyte monocyte progenitor cell | 7.08e-17 | 67 |
monopoietic cell | 1.41e-16 | 59 |
monocyte | 1.41e-16 | 59 |
monoblast | 1.41e-16 | 59 |
promonocyte | 1.41e-16 | 59 |
defensive cell | 3.43e-16 | 48 |
phagocyte | 3.43e-16 | 48 |
myeloid lineage restricted progenitor cell | 4.81e-15 | 66 |
lymphocyte of B lineage | 5.27e-12 | 24 |
pro-B cell | 5.27e-12 | 24 |
T cell | 1.28e-08 | 25 |
pro-T cell | 1.28e-08 | 25 |
B cell | 6.43e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.81e-19 | 98 |
blood island | 9.81e-19 | 98 |
hemolymphoid system | 3.68e-15 | 108 |
bone marrow | 3.03e-14 | 76 |
bone element | 1.27e-12 | 82 |
immune system | 3.37e-12 | 93 |
skeletal element | 7.14e-12 | 90 |
skeletal system | 1.85e-10 | 100 |
Ontology term | p-value | n |
---|---|---|
cancer | 5.42e-10 | 235 |
hematologic cancer | 9.26e-10 | 51 |
immune system cancer | 9.26e-10 | 51 |
disease of cellular proliferation | 3.74e-09 | 239 |
carcinoma | 6.62e-08 | 106 |
leukemia | 6.06e-07 | 39 |