FFCP PHASE1:Hg19::chr13:98605902..98605944,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3843 | |EntrezGene=3843 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6402 | |HGNC=6402 | ||
|TSSclassifier=strong | |||
|UniProt=O00410,E7EV12,C9JQT6,C9JZD8,E7EX05,F8WF30,C9JXE0,B3KWG6,Q9BVS9 | |UniProt=O00410,E7EV12,C9JQT6,C9JZD8,E7EX05,F8WF30,C9JXE0,B3KWG6,Q9BVS9 | ||
|association_with_transcript=0bp_to_ENST00000261574,ENST00000460070,ENST00000463157,ENST00000471898,ENST00000481455,ENST00000482642,ENST00000490369,ENST00000493281,NM_002271,uc001vne.2_5end | |association_with_transcript=0bp_to_ENST00000261574,ENST00000460070,ENST00000463157,ENST00000471898,ENST00000481455,ENST00000482642,ENST00000490369,ENST00000493281,NM_002271,uc001vne.2_5end | ||
|cluster_id=chr13:98605902..98605944,+ | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_3_at_IPO5_5end | |description=CAGE_peak_3_at_IPO5_5end | ||
|id=chr13:98605902..98605944,+ | |id=chr13:98605902..98605944,+ | ||
|ontology_enrichment_celltype=CL:1000415!3.27e-10!2 | |ontology_enrichment_celltype=CL:1000415!3.27e-10!2 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.08e-27;10!UBERON:0005564;2.08e-27;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001301!1.88e-19!1;UBERON:0001282!2.25e-19!1;UBERON:0009842!2.25e-19!1;UBERON:0003704!2.25e-19!1;UBERON:0001171!2.25e-19!1;UBERON:0001172!2.25e-19!1;UBERON:0001882!3.91e-19!1;UBERON:0005403!3.91e-19!1;UBERON:0003135!1.25e-15!11;UBERON:0002294!3.30e-11!7;UBERON:0001173!3.30e-11!7;UBERON:0004912!3.30e-11!7;UBERON:0002148!2.72e-10!2;UBERON:0009662!2.72e-10!2;UBERON:0000473!3.52e-10!8;UBERON:0002308!6.61e-09!9;UBERON:0000125!6.61e-09!9;UBERON:0003101!4.03e-08!22;UBERON:0000079!4.03e-08!22;UBERON:0006947!2.32e-07!3;UBERON:0004054!2.32e-07!3;UBERON:0000988!2.79e-07!3;UBERON:0006331!2.79e-07!3;UBERON:0002110!3.16e-07!3;UBERON:0006242!3.16e-07!3 | |ontology_enrichment_uberon=UBERON:0001301!1.88e-19!1;UBERON:0001282!2.25e-19!1;UBERON:0009842!2.25e-19!1;UBERON:0003704!2.25e-19!1;UBERON:0001171!2.25e-19!1;UBERON:0001172!2.25e-19!1;UBERON:0001882!3.91e-19!1;UBERON:0005403!3.91e-19!1;UBERON:0003135!1.25e-15!11;UBERON:0002294!3.30e-11!7;UBERON:0001173!3.30e-11!7;UBERON:0004912!3.30e-11!7;UBERON:0002148!2.72e-10!2;UBERON:0009662!2.72e-10!2;UBERON:0000473!3.52e-10!8;UBERON:0002308!6.61e-09!9;UBERON:0000125!6.61e-09!9;UBERON:0003101!4.03e-08!22;UBERON:0000079!4.03e-08!22;UBERON:0006947!2.32e-07!3;UBERON:0004054!2.32e-07!3;UBERON:0000988!2.79e-07!3;UBERON:0006331!2.79e-07!3;UBERON:0002110!3.16e-07!3;UBERON:0006242!3.16e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.50e-34;8!UBERON:0003135;4.86e-25;11!UBERON:0000991;1.02e-13;21!UBERON:0003101;3.77e-13;22!UBERON:0000079;3.77e-13;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.50e-34,8;UBERON:0003135,4.86e-25,11;UBERON:0000991,1.02e-13,21;UBERON:0009196,1.02e-13,21;UBERON:0009117,1.02e-13,21;UBERON:0005564,1.02e-13,21;UBERON:0004176,3.77e-13,22;UBERON:0003101,3.77e-13,22;UBERON:0000079,3.77e-13,22;UBERON:0002323,7.30e-07,46 | |||
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|short_description=p3@IPO5 | |short_description=p3@IPO5 | ||
}} | }} |
Latest revision as of 07:00, 18 September 2015
Short description: | p3@IPO5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_IPO5_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000261574, ENST00000460070, ENST00000463157, ENST00000471898, ENST00000481455, ENST00000482642, ENST00000490369, ENST00000493281, NM_002271, uc001vne.2_5end |
EntrezGene: | IPO5 |
HGNC: | 6402 |
UniProt: | O00410E7EV12C9JQT6C9JZD8E7EX05F8WF30C9JXE0B3KWG6Q9BVS9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
testis | 6.50e-34 | 8 |
male reproductive organ | 4.86e-25 | 11 |
gonad | 1.02e-13 | 21 |
indifferent external genitalia | 1.02e-13 | 21 |
indifferent gonad | 1.02e-13 | 21 |
gonad primordium | 1.02e-13 | 21 |
external genitalia | 3.77e-13 | 22 |
male organism | 3.77e-13 | 22 |
male reproductive system | 3.77e-13 | 22 |
body cavity | 7.30e-07 | 46 |