FFCP PHASE1:Hg19::chr3:105895720..105895729,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:105895720..105895729,+ | |||
|coexpression_cluster_id=C4259 | |coexpression_cluster_id=C4259 | ||
|description=CAGE_peak_at_chr3:105895720..105895729,+ | |description=CAGE_peak_at_chr3:105895720..105895729,+ | ||
|id=chr3:105895720..105895729,+ | |id=chr3:105895720..105895729,+ | ||
|ontology_enrichment_celltype=CL:0000838!6.93e-26!52;CL:0000542!2.51e-25!53;CL:0000051!2.51e-25!53;CL:0002087!2.28e-18!119;CL:0002031!9.55e-16!124;CL:0000738!6.97e-15!140;CL:0000791!9.20e-14!18;CL:0000789!9.20e-14!18;CL:0002420!9.20e-14!18;CL:0002419!9.20e-14!18;CL:0000790!9.20e-14!18;CL:0000084!1.87e-12!25;CL:0000827!1.87e-12!25;CL:0000037!3.29e-11!172;CL:0000566!3.29e-11!172;CL:0002032!1.12e-10!165;CL:0000837!1.12e-10!165;CL:0000988!2.51e-10!182;CL:0000945!2.98e-10!24;CL:0000826!2.98e-10!24;CL:0000625!5.34e-08!11;CL:0000623!1.02e-07!3;CL:0000825!1.02e-07!3;CL:0002127!5.13e-07!1;CL:0000914!5.13e-07!1;CL:0000911!5.13e-07!1;CL:0000814!5.13e-07!1;CL:0002042!5.13e-07!1;CL:0002039!5.13e-07!1;CL:0002040!5.13e-07!1;CL:0002041!5.13e-07!1 | |ontology_enrichment_celltype=CL:0000838!6.93e-26!52;CL:0000542!2.51e-25!53;CL:0000051!2.51e-25!53;CL:0002087!2.28e-18!119;CL:0002031!9.55e-16!124;CL:0000738!6.97e-15!140;CL:0000791!9.20e-14!18;CL:0000789!9.20e-14!18;CL:0002420!9.20e-14!18;CL:0002419!9.20e-14!18;CL:0000790!9.20e-14!18;CL:0000084!1.87e-12!25;CL:0000827!1.87e-12!25;CL:0000037!3.29e-11!172;CL:0000566!3.29e-11!172;CL:0002032!1.12e-10!165;CL:0000837!1.12e-10!165;CL:0000988!2.51e-10!182;CL:0000945!2.98e-10!24;CL:0000826!2.98e-10!24;CL:0000625!5.34e-08!11;CL:0000623!1.02e-07!3;CL:0000825!1.02e-07!3;CL:0002127!5.13e-07!1;CL:0000914!5.13e-07!1;CL:0000911!5.13e-07!1;CL:0000814!5.13e-07!1;CL:0002042!5.13e-07!1;CL:0002039!5.13e-07!1;CL:0002040!5.13e-07!1;CL:0002041!5.13e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0002127;4.27e-34;1!CL:0000911;4.27e-34;1!CL:0000814;4.27e-34;1!CL:0000945;3.86e-13;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,7.06e-34,1;CL:0000914,7.06e-34,1;CL:0000911,7.06e-34,1;CL:0000814,7.06e-34,1;CL:0002042,7.06e-34,1;CL:0002039,7.06e-34,1;CL:0002040,7.06e-34,1;CL:0002041,7.06e-34,1;CL:0000893,1.07e-17,2;CL:0002489,1.07e-17,2;CL:0000809,1.07e-17,2;CL:0000808,1.07e-17,2;CL:0000894,1.07e-17,2;CL:0000806,1.07e-17,2;CL:0000807,1.07e-17,2;CL:0000805,1.07e-17,2;CL:0002425,1.07e-17,2;CL:0000945,3.20e-13,24;CL:0000826,3.20e-13,24;CL:0000838,9.10e-11,52;CL:0000542,1.42e-10,53;CL:0000051,1.42e-10,53 | |||
|ontology_enrichment_development_v019=CL:0002425;8.34e-18;2 | |||
|ontology_enrichment_disease=DOID:4960!6.08e-07!1;DOID:0070004!6.08e-07!1 | |ontology_enrichment_disease=DOID:4960!6.08e-07!1;DOID:0070004!6.08e-07!1 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.57e-09,4;UBERON:0005058,1.57e-09,4;UBERON:0009113,1.57e-09,4;UBERON:0003295,1.57e-09,4;UBERON:0005562,1.57e-09,4;UBERON:0003351,8.97e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91033514369878,1.72411237844886,1.49550484495991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0.217188844705117,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,1.33749196312542,0,0,0,1.11410456885174,0.294605907474837,0.221533894583621,0.270803863765016,0.384273959177026,0.650296737799391,0.164437904603676,0.276350017785848,0.579606171470105,0,0,0,0.793165398882963,0,0,0,0,0,0,0.602300476311091,0.511946444617674,0,0.473554504088034,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2329365839288,0,0.215627574859517,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0.688859918643263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91033514369878,1.72411237844886,1.49550484495991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0.217188844705117,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,1.33749196312542,0,0,0,1.11410456885174,0.294605907474837,0.221533894583621,0.270803863765016,0.384273959177026,0.650296737799391,0.164437904603676,0.276350017785848,0.579606171470105,0,0,0,0.793165398882963,0,0,0,0,0,0,0.602300476311091,0.511946444617674,0,0.473554504088034,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2329365839288,0,0.215627574859517,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0.688859918643263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:105895720..105895729,+ | |short_description=p@chr3:105895720..105895729,+ | ||
}} | }} |
Latest revision as of 13:58, 29 July 2015
Short description: | p@chr3:105895720..105895729, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:105895720..105895729, + |
Coexpression cluster: | C4259_NK_CD4_B_anaplastic_CD8_Mast_plasma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 7.06e-34 | 1 |
immature NK T cell | 7.06e-34 | 1 |
effector T cell | 7.06e-34 | 1 |
mature NK T cell | 7.06e-34 | 1 |
immature NK T cell stage IV | 7.06e-34 | 1 |
immature NK T cell stage I | 7.06e-34 | 1 |
immature NK T cell stage II | 7.06e-34 | 1 |
immature NK T cell stage III | 7.06e-34 | 1 |
thymocyte | 1.07e-17 | 2 |
double negative thymocyte | 1.07e-17 | 2 |
double-positive, alpha-beta thymocyte | 1.07e-17 | 2 |
DN4 thymocyte | 1.07e-17 | 2 |
DN1 thymic pro-T cell | 1.07e-17 | 2 |
DN2 thymocyte | 1.07e-17 | 2 |
DN3 thymocyte | 1.07e-17 | 2 |
immature single positive thymocyte | 1.07e-17 | 2 |
early T lineage precursor | 1.07e-17 | 2 |
lymphocyte of B lineage | 3.20e-13 | 24 |
pro-B cell | 3.20e-13 | 24 |
lymphoid lineage restricted progenitor cell | 9.10e-11 | 52 |
lymphocyte | 1.42e-10 | 53 |
common lymphoid progenitor | 1.42e-10 | 53 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.57e-09 | 4 |
hemolymphoid system gland | 1.57e-09 | 4 |
thymic region | 1.57e-09 | 4 |
pharyngeal gland | 1.57e-09 | 4 |
thymus primordium | 1.57e-09 | 4 |
pharyngeal epithelium | 8.97e-07 | 6 |