FFCP PHASE1:Hg19::chr19:54377035..54377067,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:54377035..54377067,+
|short_description=p4@MYADM
|description=CAGE_peak_4_at_MYADM_5end
|association_with_transcript=39bp_to_AK027693_5end
|EntrezGene=91...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=91663 | |EntrezGene=91663 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=7544 | |HGNC=7544 | ||
|TSSclassifier=strong | |||
|UniProt=Q96S97 | |UniProt=Q96S97 | ||
|association_with_transcript=39bp_to_AK027693_5end | |||
|cluster_id=chr19:54377035..54377067,+ | |||
|coexpression_cluster_id=C482 | |||
|description=CAGE_peak_4_at_MYADM_5end | |||
|id=chr19:54377035..54377067,+ | |||
|ontology_enrichment_celltype=CL:0002057!7.47e-16!42;CL:0000860!4.21e-13!45;CL:0000048!1.12e-11!430;CL:0000723!7.89e-11!436;CL:0000034!2.21e-10!444;CL:0000766!1.61e-09!76;CL:0000359!2.15e-08!32;CL:0000144!6.13e-08!625;CL:0000192!9.11e-08!42;CL:0000514!9.11e-08!42;CL:0002371!1.48e-07!591;CL:0000557!1.53e-07!71;CL:0000134!1.93e-07!358;CL:0002320!2.68e-07!365;CL:0000839!7.41e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.65e-19;33!CL:0002057;1.65e-19;33!CL:0000473;2.51e-13;39!CL:0000234;2.51e-13;39!CL:0000576;4.14e-08;48!CL:0000359;4.26e-08;32!CL:0000766;1.62e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.10e-16,42;CL:0002057,6.10e-16,42;CL:0000048,4.35e-15,427;CL:0000723,3.08e-14,433;CL:0000034,1.32e-13,441;CL:0000473,3.41e-13,48;CL:0000234,3.41e-13,48;CL:0000766,7.06e-12,72;CL:0000134,2.87e-10,354;CL:0002320,8.34e-10,361;CL:0000557,1.55e-09,67;CL:0000839,9.49e-09,66;CL:0000359,9.65e-09,32;CL:0000192,6.20e-08,43;CL:0000514,6.20e-08,43;CL:0002009,8.33e-08,61;CL:0002194,1.83e-07,59;CL:0000576,1.83e-07,59;CL:0000040,1.83e-07,59;CL:0000559,1.83e-07,59;CL:0000219,5.76e-07,386;CL:0000057,6.03e-07,76 | |||
|ontology_enrichment_development_v019=CL:0002057;2.24e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!4.25e-16!216;UBERON:0000926!5.69e-13!448;UBERON:0004120!5.69e-13!448;UBERON:0006603!5.69e-13!448;UBERON:0002204!1.07e-09!167;UBERON:0004535!3.96e-09!110;UBERON:0001009!5.67e-09!113;UBERON:0001637!1.14e-08!42;UBERON:0003509!1.14e-08!42;UBERON:0004572!1.14e-08!42;UBERON:0004872!1.74e-07!84;UBERON:0004573!2.31e-07!33;UBERON:0004571!2.31e-07!33;UBERON:0001981!2.67e-07!60;UBERON:0007500!2.67e-07!60;UBERON:0004537!2.67e-07!60;UBERON:0006965!2.67e-07!60;UBERON:0002049!3.86e-07!79;UBERON:0007798!3.86e-07!79;UBERON:0002384!4.65e-07!375;UBERON:0000055!4.87e-07!69;UBERON:0003914!5.04e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;7.55e-07;33!UBERON:0004571;7.55e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.87e-21,315;UBERON:0004120,1.87e-21,315;UBERON:0006603,1.87e-21,315;UBERON:0003081,8.70e-18,203;UBERON:0002204,3.05e-10,167;UBERON:0002384,2.28e-09,371;UBERON:0001637,3.85e-09,42;UBERON:0003509,3.85e-09,42;UBERON:0004572,3.85e-09,42;UBERON:0004535,9.03e-09,109;UBERON:0001009,9.19e-09,112;UBERON:0002371,3.62e-08,76;UBERON:0004573,5.77e-08,33;UBERON:0004571,5.77e-08,33;UBERON:0007500,2.62e-07,59;UBERON:0001981,2.62e-07,59;UBERON:0004537,2.62e-07,59;UBERON:0006965,2.62e-07,59;UBERON:0002390,4.85e-07,98;UBERON:0003061,4.85e-07,98;UBERON:0002193,5.43e-07,108;UBERON:0001474,5.59e-07,82;UBERON:0004872,7.45e-07,83;UBERON:0000055,7.97e-07,68;UBERON:0002049,8.34e-07,78;UBERON:0007798,8.34e-07,78 | |||
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| ||
|short_description=p4@MYADM | |||
}} | }} |
Latest revision as of 20:10, 19 September 2015
Short description: | p4@MYADM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_MYADM_5end |
Coexpression cluster: | C482_CD14_Mast_Fibroblast_Smooth_Neutrophils_Basophils_Mesenchymal |
Association with transcript: | 39bp_to_AK027693_5end |
EntrezGene: | MYADM |
HGNC: | 7544 |
UniProt: | Q96S97 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.10e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.10e-16 | 42 |
multi fate stem cell | 4.35e-15 | 427 |
somatic stem cell | 3.08e-14 | 433 |
stem cell | 1.32e-13 | 441 |
defensive cell | 3.41e-13 | 48 |
phagocyte | 3.41e-13 | 48 |
myeloid leukocyte | 7.06e-12 | 72 |
mesenchymal cell | 2.87e-10 | 354 |
connective tissue cell | 8.34e-10 | 361 |
granulocyte monocyte progenitor cell | 1.55e-09 | 67 |
myeloid lineage restricted progenitor cell | 9.49e-09 | 66 |
vascular associated smooth muscle cell | 9.65e-09 | 32 |
smooth muscle cell | 6.20e-08 | 43 |
smooth muscle myoblast | 6.20e-08 | 43 |
macrophage dendritic cell progenitor | 8.33e-08 | 61 |
monopoietic cell | 1.83e-07 | 59 |
monocyte | 1.83e-07 | 59 |
monoblast | 1.83e-07 | 59 |
promonocyte | 1.83e-07 | 59 |
motile cell | 5.76e-07 | 386 |
fibroblast | 6.03e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 1.87e-21 | 315 |
mesoderm-derived structure | 1.87e-21 | 315 |
presumptive mesoderm | 1.87e-21 | 315 |
lateral plate mesoderm | 8.70e-18 | 203 |
musculoskeletal system | 3.05e-10 | 167 |
connective tissue | 2.28e-09 | 371 |
artery | 3.85e-09 | 42 |
arterial blood vessel | 3.85e-09 | 42 |
arterial system | 3.85e-09 | 42 |
cardiovascular system | 9.03e-09 | 109 |
circulatory system | 9.19e-09 | 112 |
bone marrow | 3.62e-08 | 76 |
systemic artery | 5.77e-08 | 33 |
systemic arterial system | 5.77e-08 | 33 |
epithelial tube open at both ends | 2.62e-07 | 59 |
blood vessel | 2.62e-07 | 59 |
blood vasculature | 2.62e-07 | 59 |
vascular cord | 2.62e-07 | 59 |
hematopoietic system | 4.85e-07 | 98 |
blood island | 4.85e-07 | 98 |
hemolymphoid system | 5.43e-07 | 108 |
bone element | 5.59e-07 | 82 |
splanchnic layer of lateral plate mesoderm | 7.45e-07 | 83 |
vessel | 7.97e-07 | 68 |
vasculature | 8.34e-07 | 78 |
vascular system | 8.34e-07 | 78 |