FFCP PHASE1:Hg19::chr19:54377568..54377592,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:54377568..54377592,+ | |||
|coexpression_cluster_id=C482 | |coexpression_cluster_id=C482 | ||
|description=CAGE_peak_at_chr19:54377568..54377592,+ | |description=CAGE_peak_at_chr19:54377568..54377592,+ | ||
|id=chr19:54377568..54377592,+ | |id=chr19:54377568..54377592,+ | ||
|ontology_enrichment_celltype=CL:0000860;4.55e-23;33!CL:0002057;4.55e-23;33!CL:0000473;9.88e-17;39!CL:0000234;9.88e-17;39!CL:0000576;2.38e-11;48!CL:0000766;1.51e-09;69 | |ontology_enrichment_celltype=CL:0002057!3.47e-16!42;CL:0000860!2.90e-13!45;CL:0000766!2.30e-11!76;CL:0000557!5.62e-10!71;CL:0002009!2.86e-09!65;CL:0000839!3.16e-09!70;CL:0002194!8.75e-09!63;CL:0000576!8.75e-09!63;CL:0000040!8.75e-09!63;CL:0000559!8.75e-09!63;CL:0000144!1.54e-07!625;CL:0000048!5.60e-07!430 | ||
| | |ontology_enrichment_celltype_v019=CL:0000860;4.55e-23;33!CL:0002057;4.55e-23;33!CL:0000473;9.88e-17;39!CL:0000234;9.88e-17;39!CL:0000576;2.38e-11;48!CL:0000766;1.51e-09;69 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.42e-20,42;CL:0002057,1.42e-20,42;CL:0000473,8.84e-19,48;CL:0000234,8.84e-19,48;CL:0000766,2.36e-16,72;CL:0000557,3.54e-13,67;CL:0000839,1.26e-12,66;CL:0002009,1.75e-12,61;CL:0002194,2.44e-12,59;CL:0000576,2.44e-12,59;CL:0000040,2.44e-12,59;CL:0000559,2.44e-12,59;CL:0000763,2.15e-09,108;CL:0000049,2.15e-09,108;CL:0000048,2.34e-09,427;CL:0000723,1.03e-08,433;CL:0000134,5.02e-08,354;CL:0000034,6.69e-08,441;CL:0002320,1.22e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;4.75e-16;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!6.54e-11!216;UBERON:0000926!1.06e-10!448;UBERON:0004120!1.06e-10!448;UBERON:0006603!1.06e-10!448;UBERON:0002204!8.49e-10!167;UBERON:0002371!2.55e-07!80;UBERON:0001474!9.59e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,4.97e-11,203;UBERON:0000926,1.02e-10,315;UBERON:0004120,1.02e-10,315;UBERON:0006603,1.02e-10,315;UBERON:0002371,1.15e-10,76;UBERON:0002390,9.41e-10,98;UBERON:0003061,9.41e-10,98;UBERON:0001474,1.56e-09,82;UBERON:0002193,4.19e-09,108;UBERON:0002204,2.07e-08,167;UBERON:0002405,5.04e-08,93;UBERON:0004765,1.38e-07,90;UBERON:0002384,2.28e-07,371;UBERON:0001434,4.41e-07,100 | |||
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| ||
|short_description=p@chr19:54377568..54377592,+ | |short_description=p@chr19:54377568..54377592,+ | ||
}} | }} |
Latest revision as of 17:04, 27 July 2015
Short description: | p@chr19:54377568..54377592, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:54377568..54377592, + |
Coexpression cluster: | C482_CD14_Mast_Fibroblast_Smooth_Neutrophils_Basophils_Mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.42e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.42e-20 | 42 |
defensive cell | 8.84e-19 | 48 |
phagocyte | 8.84e-19 | 48 |
myeloid leukocyte | 2.36e-16 | 72 |
granulocyte monocyte progenitor cell | 3.54e-13 | 67 |
myeloid lineage restricted progenitor cell | 1.26e-12 | 66 |
macrophage dendritic cell progenitor | 1.75e-12 | 61 |
monopoietic cell | 2.44e-12 | 59 |
monocyte | 2.44e-12 | 59 |
monoblast | 2.44e-12 | 59 |
promonocyte | 2.44e-12 | 59 |
myeloid cell | 2.15e-09 | 108 |
common myeloid progenitor | 2.15e-09 | 108 |
multi fate stem cell | 2.34e-09 | 427 |
somatic stem cell | 1.03e-08 | 433 |
mesenchymal cell | 5.02e-08 | 354 |
stem cell | 6.69e-08 | 441 |
connective tissue cell | 1.22e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 4.97e-11 | 203 |
mesoderm | 1.02e-10 | 315 |
mesoderm-derived structure | 1.02e-10 | 315 |
presumptive mesoderm | 1.02e-10 | 315 |
bone marrow | 1.15e-10 | 76 |
hematopoietic system | 9.41e-10 | 98 |
blood island | 9.41e-10 | 98 |
bone element | 1.56e-09 | 82 |
hemolymphoid system | 4.19e-09 | 108 |
musculoskeletal system | 2.07e-08 | 167 |
immune system | 5.04e-08 | 93 |
skeletal element | 1.38e-07 | 90 |
connective tissue | 2.28e-07 | 371 |
skeletal system | 4.41e-07 | 100 |