FFCP PHASE1:Hg19::chr14:55604996..55605013,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3958 | |EntrezGene=3958 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6563 | |HGNC=6563 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=234bp_to_ENST00000556263_5end | |association_with_transcript=234bp_to_ENST00000556263_5end | ||
|cluster_id=chr14:55604996..55605013,+ | |||
|coexpression_cluster_id=C1200 | |coexpression_cluster_id=C1200 | ||
|description=CAGE_peak_4_at_LGALS3_5end | |description=CAGE_peak_4_at_LGALS3_5end | ||
|id=chr14:55604996..55605013,+ | |id=chr14:55604996..55605013,+ | ||
|ontology_enrichment_celltype=CL:0000839!4.36e-21!70;CL:0000557!2.69e-19!71;CL:0002194!1.88e-18!63;CL:0000576!1.88e-18!63;CL:0000040!1.88e-18!63;CL:0000559!1.88e-18!63;CL:0000860!9.48e-18!45;CL:0002009!1.20e-17!65;CL:0002057!8.70e-17!42;CL:0000766!1.65e-16!76 | |ontology_enrichment_celltype=CL:0000839!4.36e-21!70;CL:0000557!2.69e-19!71;CL:0002194!1.88e-18!63;CL:0000576!1.88e-18!63;CL:0000040!1.88e-18!63;CL:0000559!1.88e-18!63;CL:0000860!9.48e-18!45;CL:0002009!1.20e-17!65;CL:0002057!8.70e-17!42;CL:0000766!1.65e-16!76 | ||
|ontology_enrichment_celltype_v019=CL:0000860;6.06e-34;33!CL:0002057;6.06e-34;33!CL:0000473;2.18e-32;39!CL:0000234;2.18e-32;39!CL:0000576;1.03e-15;48!CL:0000766;2.04e-13;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.37e-34,48;CL:0000234,1.37e-34,48;CL:0000839,5.63e-34,66;CL:0000557,3.02e-33,67;CL:0002194,1.62e-31,59;CL:0000576,1.62e-31,59;CL:0000040,1.62e-31,59;CL:0000559,1.62e-31,59;CL:0002009,4.81e-30,61;CL:0000766,6.56e-30,72;CL:0000860,2.56e-29,42;CL:0002057,2.56e-29,42;CL:0000763,3.00e-15,108;CL:0000049,3.00e-15,108;CL:0002031,2.00e-12,120;CL:0002087,9.44e-11,115;CL:0000738,4.48e-10,136 | |||
|ontology_enrichment_development_v019=CL:0002057;1.01e-21;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.19e-18!80;UBERON:0001474!4.37e-16!86;UBERON:0004765!1.64e-15!101;UBERON:0001434!1.64e-15!101;UBERON:0002390!2.42e-13!102;UBERON:0003061!2.42e-13!102;UBERON:0002193!6.17e-13!112;UBERON:0002204!9.88e-12!167;UBERON:0000926!2.67e-11!448;UBERON:0004120!2.67e-11!448;UBERON:0006603!2.67e-11!448;UBERON:0002405!2.23e-09!115;UBERON:0003081!1.72e-08!216;UBERON:0000468!2.60e-07!659 | |ontology_enrichment_uberon=UBERON:0002371!2.19e-18!80;UBERON:0001474!4.37e-16!86;UBERON:0004765!1.64e-15!101;UBERON:0001434!1.64e-15!101;UBERON:0002390!2.42e-13!102;UBERON:0003061!2.42e-13!102;UBERON:0002193!6.17e-13!112;UBERON:0002204!9.88e-12!167;UBERON:0000926!2.67e-11!448;UBERON:0004120!2.67e-11!448;UBERON:0006603!2.67e-11!448;UBERON:0002405!2.23e-09!115;UBERON:0003081!1.72e-08!216;UBERON:0000468!2.60e-07!659 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.18e-32,76;UBERON:0001474,3.00e-30,82;UBERON:0004765,1.52e-27,90;UBERON:0001434,8.37e-27,100;UBERON:0002390,7.35e-24,98;UBERON:0003061,7.35e-24,98;UBERON:0002405,2.06e-23,93;UBERON:0002193,3.27e-20,108;UBERON:0002204,5.66e-16,167;UBERON:0003081,1.64e-14,203;UBERON:0000926,1.44e-12,315;UBERON:0004120,1.44e-12,315;UBERON:0006603,1.44e-12,315 | |||
|phase1_expression=0.363356758541113,0.856402095563933,0.281908808191942,0,0,0.872338524100369,0,0,1.30592814099919,0,0,1.09220686065086,2.37390280405608,0.495065411840187,1.98838425436749,0.672325146451775,0.602694528023977,0,0.975865597581014,0.123121058076788,0.408001382488506,0.626909442956176,0,0.410623275218653,0.251085279189606,0,0,0.157421562627358,0.786728553697808,0,0,0,0.30120591877825,1.47901604066715,0,0,0,0,1.40381113229099,0.651032612147555,0.447830948479849,1.29557466407592,0.257575567634187,2.76256653681173,4.53451132426571,3.15359279544161,4.41615170120801,6.16751832032739,4.33588919253145,3.74000110018796,3.33008918487831,1.41889337933151,2.41321976515633,1.93645405075148,2.70852973188684,5.08254316765033,6.27684145133045,6.06753408001728,4.28517449319264,2.56743221660875,5.75403413219137,3.95821560224059,3.19141852194611,2.55734850319616,5.5139755339431,5.6738522469114,2.4912889959823,2.76373531782418,3.65038042894141,3.04064382587163,1.81619850790011,1.84138817993782,5.37986058649504,0.633765858935825,0.212604299965044,0.209658645508376,0.22465726229299,0.150176892841506,0,0,0.59675003159727,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0.393010762749165,0.205601498999509,0.167186495390678,0,0,0,0,0.294605907474837,0,0,1.92136979588513,0.650296737799391,0,0.276350017785848,0,0,0,0,0.113309342697566,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0.361439152384566,0,1.44846518960824,0,1.45990461090791,0.283604451492204,0.665188192387692,0,0.130979075497713,0.364295288292542,0.741568885568859,1.62273696827342,1.39303789839414,2.26028532882071,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0,1.52054421143703,0.488124115096339,0.367663080345869,0,0.0892997282840798,0,0.225222960966644,0,0,0.183201743930407,0,0,0.872188104285069,0.496971951695318,0.379891534993739,0,1.14734648299525,2.12801029319014,0.560677600142307,0,0.49333509683432,0,0.538842688278752,0.653847612453835,0.454072282934794,0,0.468642863667593,0.624320153660641,0.570471821544449,2.39117888882882,0.23486899728753,0,0.140450806702248,0.408308342509787,0.491337269247072,0.619954687054593,0,1.23633464639278,0,0.718618141816238,0,0,0,0,1.22595118319608,0.751190294532984,0,0.89694817844431,0.640672166455702,0.423863802319124,0,0.618315175430633,0.515281080091258,0.37223371266318,0.168776332241266,0.389748020644795,0.757301322732344,0.368199594569197,0.323292113637624,0.355009592516614,0.302256294682921,0,0,0.272746120590835,0,0,0,0.116193942869518,0,0,0,0,1.92972281457866,0,0.464367928031979,0.721879481669586,1.0647612003586,0.337169380156203,0,0.882351781859152,0.435758888184812,0.71181185733329,0.269662616320329,0.392442930250692,1.15424147083917,0,0,0,0,0,0,0,0,0.245976877086227,0.171567810298526,0.109750285408626,0,0.301586917234893,0.370353780634118,0,0,0,0,0,0,0.462985512576611,0.570762456703795,1.58040879591855,1.71697232418975,0.738651018262192,1.8720341211139,1.33768046059855,0.93733833986777,0.335964256397719,0.141775097242386,0,0,0,2.46331618947972,0.352193736052904,2.28060927094849,2.88239906833923,3.40854570251226,0.761974731506028,0.763976851116555,4.68869788840188,1.71072446022705,2.15937734676979,2.70308752059526,2.00078502841405,0.112131084345361,0.43596006883328,0.07333828582095,0.129271715757778,0,1.690605505112,0.26593811658487,1.04007436911366,0,0,0.266422179016099,0.142977993658148,0,0,0.325736184293735,0,0,0,0,0,6.08118903205952,9.04062764577828,25.3000727379638,0.479249710983165,0,0,0.434343920002738,2.67119219315498,0,0.224170287987055,0,0,0,0.508189248444927,0,0.773288812777695,0.502548796003046,1.27587750330633,0,0,0,0.613457458595699,0.500170521059677,0.813795071099207,1.03985430765404,3.56857977594324,0.788512075169673,0.468565659970853,0.300946099727719,0,2.0694614258501,0.664225598535437,0.553107505625109,0.521301686808497,0.587403472388222,0.343143423810856,0.206768026122887,1.07857100409308,0.213455115606889,0.606255142892519,1.66435439510497,1.20956117331872,0.248107807818777,0,1.68396056659844,0.256278298511402,0,0.64341568457443,0,0.462629081407967,0.532685175939381,0.246381468041427,0.519254429183621,1.62694529843943,0.483437798366489,1.40354529212299,0.552485933615378,0.459257792658427,1.63882051206045,2.22911505431021,0,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0.447749509444357,0.438519753291869,0.522870902049801,0,0,0,0.309123034943167,0,0,0,0.650060246036521,0,0.096670718292122,0.770243085573222,0.15350367472613,0.413509717453592,0.214840489736547,0.580066775656914,0.170453254832202,0,0.495854746082934,0.768760269460425,0.255225424989168,0.2023155617111,0.464845549297286,0.31481234683064,0,0,0,0,0,0,0.372158369359667,0,0,0,2.1396949401696,0,0.78494864019923,0.359744915166629,0.274537029736055,0.235624804691373,0,1.58510321173008,0,0,0.243713489631284,2.11300293513511,0.136499911407986,1.27264888758341,1.13008116620243,0.551365343546124,0,0,1.15755106853338,0.655894752046633,0,0.30982349809975,0,0.143411352204052,0.0982490410131212,0,0.354761064070598,1.6888610823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| ||
|short_description=p4@LGALS3 | |short_description=p4@LGALS3 | ||
}} | }} |
Latest revision as of 16:15, 24 September 2015
Short description: | p4@LGALS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LGALS3_5end |
Coexpression cluster: | C1200_Monocytederived_Melanocyte_CD14_large_amniotic_Mast_melanoma |
Association with transcript: | 234bp_to_ENST00000556263_5end |
EntrezGene: | LGALS3 |
HGNC: | 6563 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.37e-34 | 48 |
phagocyte | 1.37e-34 | 48 |
myeloid lineage restricted progenitor cell | 5.63e-34 | 66 |
granulocyte monocyte progenitor cell | 3.02e-33 | 67 |
monopoietic cell | 1.62e-31 | 59 |
monocyte | 1.62e-31 | 59 |
monoblast | 1.62e-31 | 59 |
promonocyte | 1.62e-31 | 59 |
macrophage dendritic cell progenitor | 4.81e-30 | 61 |
myeloid leukocyte | 6.56e-30 | 72 |
classical monocyte | 2.56e-29 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.56e-29 | 42 |
myeloid cell | 3.00e-15 | 108 |
common myeloid progenitor | 3.00e-15 | 108 |
hematopoietic lineage restricted progenitor cell | 2.00e-12 | 120 |
nongranular leukocyte | 9.44e-11 | 115 |
leukocyte | 4.48e-10 | 136 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.18e-32 | 76 |
bone element | 3.00e-30 | 82 |
skeletal element | 1.52e-27 | 90 |
skeletal system | 8.37e-27 | 100 |
hematopoietic system | 7.35e-24 | 98 |
blood island | 7.35e-24 | 98 |
immune system | 2.06e-23 | 93 |
hemolymphoid system | 3.27e-20 | 108 |
musculoskeletal system | 5.66e-16 | 167 |
lateral plate mesoderm | 1.64e-14 | 203 |
mesoderm | 1.44e-12 | 315 |
mesoderm-derived structure | 1.44e-12 | 315 |
presumptive mesoderm | 1.44e-12 | 315 |