FFCP PHASE1:Hg19::chr5:157079374..157079395,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11063 | |EntrezGene=11063 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30635 | |HGNC=30635 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-2bp_to_ENST00000311371_5end | |association_with_transcript=-2bp_to_ENST00000311371_5end | ||
|cluster_id=chr5:157079374..157079395,- | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_1_at_SOX30_5end | |description=CAGE_peak_1_at_SOX30_5end | ||
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|ontology_enrichment_celltype=CL:0002057!1.44e-24!42;CL:0000860!7.11e-23!45;CL:0002194!8.01e-16!63;CL:0000576!8.01e-16!63;CL:0000040!8.01e-16!63;CL:0000559!8.01e-16!63;CL:0002009!2.58e-15!65;CL:0000839!3.59e-14!70;CL:0000557!5.81e-14!71;CL:0000766!5.40e-13!76;CL:0000763!1.53e-08!112;CL:0000049!1.53e-08!112;CL:0002087!5.54e-08!119;CL:0002031!1.27e-07!124 | |ontology_enrichment_celltype=CL:0002057!1.44e-24!42;CL:0000860!7.11e-23!45;CL:0002194!8.01e-16!63;CL:0000576!8.01e-16!63;CL:0000040!8.01e-16!63;CL:0000559!8.01e-16!63;CL:0002009!2.58e-15!65;CL:0000839!3.59e-14!70;CL:0000557!5.81e-14!71;CL:0000766!5.40e-13!76;CL:0000763!1.53e-08!112;CL:0000049!1.53e-08!112;CL:0002087!5.54e-08!119;CL:0002031!1.27e-07!124 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.08e-27;10!UBERON:0005564;2.08e-27;10 | |ontology_enrichment_development_v019=UBERON:0009117;2.08e-27;10!UBERON:0005564;2.08e-27;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000473!9.00e-16!8;UBERON:0002371!2.64e-12!80;UBERON:0003135!1.23e-11!11;UBERON:0001474!2.17e-11!86;UBERON:0004765!1.43e-09!101;UBERON:0001434!1.43e-09!101;UBERON:0002390!1.81e-09!102;UBERON:0003061!1.81e-09!102;UBERON:0002193!1.53e-08!112;UBERON:0002405!2.71e-08!115;UBERON:0001255!9.19e-08!2;UBERON:0001556!9.19e-08!2 | |ontology_enrichment_uberon=UBERON:0000473!9.00e-16!8;UBERON:0002371!2.64e-12!80;UBERON:0003135!1.23e-11!11;UBERON:0001474!2.17e-11!86;UBERON:0004765!1.43e-09!101;UBERON:0001434!1.43e-09!101;UBERON:0002390!1.81e-09!102;UBERON:0003061!1.81e-09!102;UBERON:0002193!1.53e-08!112;UBERON:0002405!2.71e-08!115;UBERON:0001255!9.19e-08!2;UBERON:0001556!9.19e-08!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.50e-34;8!UBERON:0003135;4.86e-25;11!UBERON:0000991;1.02e-13;21!UBERON:0003101;3.77e-13;22!UBERON:0000079;3.77e-13;22 | |ontology_enrichment_uberon_v019=UBERON:0000473;6.50e-34;8!UBERON:0003135;4.86e-25;11!UBERON:0000991;1.02e-13;21!UBERON:0003101;3.77e-13;22!UBERON:0000079;3.77e-13;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.50e-34,8;UBERON:0003135,4.86e-25,11;UBERON:0000991,1.02e-13,21;UBERON:0009196,1.02e-13,21;UBERON:0009117,1.02e-13,21;UBERON:0005564,1.02e-13,21;UBERON:0004176,3.77e-13,22;UBERON:0003101,3.77e-13,22;UBERON:0000079,3.77e-13,22;UBERON:0002323,7.30e-07,46 | |||
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|short_description=p1@SOX30 | |short_description=p1@SOX30 | ||
}} | }} |
Latest revision as of 14:17, 16 September 2015
Short description: | p1@SOX30 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SOX30_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -2bp_to_ENST00000311371_5end |
EntrezGene: | SOX30 |
HGNC: | 30635 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
testis | 6.50e-34 | 8 |
male reproductive organ | 4.86e-25 | 11 |
gonad | 1.02e-13 | 21 |
indifferent external genitalia | 1.02e-13 | 21 |
indifferent gonad | 1.02e-13 | 21 |
gonad primordium | 1.02e-13 | 21 |
external genitalia | 3.77e-13 | 22 |
male organism | 3.77e-13 | 22 |
male reproductive system | 3.77e-13 | 22 |
body cavity | 7.30e-07 | 46 |