FFCP PHASE1:Hg19::chr14:21852408..21852443,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=728353 | |EntrezGene=728353 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-7bp_to_BC031683_5end | |association_with_transcript=-7bp_to_BC031683_5end | ||
|cluster_id=chr14:21852408..21852443,+ | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_1_at_LOC728353_5end | |description=CAGE_peak_1_at_LOC728353_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000511;2.70e-40;1!CL:0002625;2.70e-40;1!CL:0000216;2.70e-40;1!CL:0000154;7.01e-08;6 | |ontology_enrichment_celltype_v019=CL:0000511;2.70e-40;1!CL:0002625;2.70e-40;1!CL:0000216;2.70e-40;1!CL:0000154;7.01e-08;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000511,3.30e-40,1;CL:0002625,3.30e-40,1;CL:0000216,3.30e-40,1;CL:0000154,7.25e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0009117;5.90e-17;10!UBERON:0005564;5.90e-17;10 | |ontology_enrichment_development_v019=UBERON:0009117;5.90e-17;10!UBERON:0005564;5.90e-17;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0000473;4.68e-45;8!UBERON:0001136;2.70e-40;1!UBERON:0001343;2.70e-40;1!UBERON:0004910;2.70e-40;1!UBERON:0004813;2.70e-40;1!UBERON:0003135;4.54e-33;11!UBERON:0004909;6.30e-21;2!UBERON:0000991;8.53e-18;21!UBERON:0003101;4.99e-17;22!UBERON:0000079;4.99e-17;22!UBERON:0005904;3.60e-11;4!UBERON:0002323;8.32e-07;45 | |ontology_enrichment_uberon_v019=UBERON:0000473;4.68e-45;8!UBERON:0001136;2.70e-40;1!UBERON:0001343;2.70e-40;1!UBERON:0004910;2.70e-40;1!UBERON:0004813;2.70e-40;1!UBERON:0003135;4.54e-33;11!UBERON:0004909;6.30e-21;2!UBERON:0000991;8.53e-18;21!UBERON:0003101;4.99e-17;22!UBERON:0000079;4.99e-17;22!UBERON:0005904;3.60e-11;4!UBERON:0002323;8.32e-07;45 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,5.04e-45,8;UBERON:0001136,3.30e-40,1;UBERON:0001343,3.30e-40,1;UBERON:0004910,3.30e-40,1;UBERON:0005154,3.30e-40,1;UBERON:0005295,3.30e-40,1;UBERON:0004813,3.30e-40,1;UBERON:0005297,3.30e-40,1;UBERON:0005294,3.30e-40,1;UBERON:0010141,3.30e-40,1;UBERON:0005891,3.30e-40,1;UBERON:0003135,4.79e-33,11;UBERON:0004909,6.96e-21,2;UBERON:0000991,8.78e-18,21;UBERON:0009196,8.78e-18,21;UBERON:0009117,8.78e-18,21;UBERON:0005564,8.78e-18,21;UBERON:0004176,5.13e-17,22;UBERON:0003101,5.13e-17,22;UBERON:0000079,5.13e-17,22;UBERON:0005904,3.79e-11,4;UBERON:0002323,1.43e-08,46;UBERON:0003133,3.04e-08,48;UBERON:0004458,4.32e-08,49;UBERON:0003886,2.08e-07,54;UBERON:0005156,7.68e-07,59;UBERON:0000990,7.68e-07,59 | |||
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| ||
|short_description=p1@LOC728353 | |short_description=p1@LOC728353 | ||
}} | }} |
Latest revision as of 02:49, 19 September 2015
Short description: | p1@LOC728353 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOC728353_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -7bp_to_BC031683_5end |
EntrezGene: | LOC728353 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
androgen binding protein secreting cell | 3.30e-40 | 1 |
seminiferous tubule epithelial cell | 3.30e-40 | 1 |
Sertoli cell | 3.30e-40 | 1 |
protein secreting cell | 7.25e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
testis | 5.04e-45 | 8 |
mesothelium | 3.30e-40 | 1 |
seminiferous tubule of testis | 3.30e-40 | 1 |
epithelium of male gonad | 3.30e-40 | 1 |
epithelial cord | 3.30e-40 | 1 |
sex cord | 3.30e-40 | 1 |
seminiferous tubule epithelium | 3.30e-40 | 1 |
testis sex cord | 3.30e-40 | 1 |
genital ridge | 3.30e-40 | 1 |
primitive sex cord of indifferent gonad | 3.30e-40 | 1 |
coelomic epithelium | 3.30e-40 | 1 |
male reproductive organ | 4.79e-33 | 11 |
epithelium of gonad | 6.96e-21 | 2 |
gonad | 8.78e-18 | 21 |
indifferent external genitalia | 8.78e-18 | 21 |
indifferent gonad | 8.78e-18 | 21 |
gonad primordium | 8.78e-18 | 21 |
external genitalia | 5.13e-17 | 22 |
male organism | 5.13e-17 | 22 |
male reproductive system | 5.13e-17 | 22 |
duct of male reproductive system | 3.79e-11 | 4 |
body cavity | 1.43e-08 | 46 |
reproductive organ | 3.04e-08 | 48 |
body cavity or lining | 4.32e-08 | 49 |
body cavity precursor | 2.08e-07 | 54 |
reproductive structure | 7.68e-07 | 59 |
reproductive system | 7.68e-07 | 59 |