FFCP PHASE1:Hg19::chr9:5890872..5890902,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2315 | |EntrezGene=2315 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7124 | |HGNC=7124 | ||
|TSSclassifier=strong | |||
|UniProt=Q16655 | |UniProt=Q16655 | ||
|association_with_transcript=-5bp_to_ENST00000381476_5end | |association_with_transcript=-5bp_to_ENST00000381476_5end | ||
|cluster_id=chr9:5890872..5890902,+ | |||
|coexpression_cluster_id=C58 | |coexpression_cluster_id=C58 | ||
|description=CAGE_peak_1_at_MLANA_5end | |description=CAGE_peak_1_at_MLANA_5end | ||
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|ontology_enrichment_celltype=CL:0000147!2.08e-35!14;CL:0000148!4.56e-23!10;CL:0000541!4.56e-23!10;CL:0000325!1.15e-19!39;CL:0000453!1.01e-17!5;CL:0000149!8.48e-15!4;CL:0002567!4.29e-12!3;CL:0002586!2.52e-11!3;CL:0002077!3.89e-11!33;CL:0000710!9.04e-11!20;CL:0000990!1.09e-09!8;CL:0000075!1.89e-09!27;CL:0000451!7.36e-08!10;CL:0001014!9.23e-08!2;CL:0001016!9.23e-08!2;CL:0002274!6.06e-07!5;CL:0000457!6.06e-07!5;CL:0002191!6.06e-07!5;CL:0000097!6.06e-07!5;CL:0000831!6.06e-07!5;CL:0002028!6.06e-07!5 | |ontology_enrichment_celltype=CL:0000147!2.08e-35!14;CL:0000148!4.56e-23!10;CL:0000541!4.56e-23!10;CL:0000325!1.15e-19!39;CL:0000453!1.01e-17!5;CL:0000149!8.48e-15!4;CL:0002567!4.29e-12!3;CL:0002586!2.52e-11!3;CL:0002077!3.89e-11!33;CL:0000710!9.04e-11!20;CL:0000990!1.09e-09!8;CL:0000075!1.89e-09!27;CL:0000451!7.36e-08!10;CL:0001014!9.23e-08!2;CL:0001016!9.23e-08!2;CL:0002274!6.06e-07!5;CL:0000457!6.06e-07!5;CL:0002191!6.06e-07!5;CL:0000097!6.06e-07!5;CL:0000831!6.06e-07!5;CL:0002028!6.06e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000147;1.21e-50;14!CL:0000148;1.16e-38;10!CL:0000149;5.35e-24;4!CL:0002567;1.99e-19;3!CL:0000453;3.48e-19;5!CL:0000710;9.79e-19;20!CL:0002586;4.29e-18;3!CL:0002077;1.78e-17;34!CL:0000075;1.47e-13;27!CL:0000097;4.39e-11;5!CL:0000990;9.86e-11;8!CL:0000451;8.42e-09;10!CL:0002566;1.06e-07;1 | |ontology_enrichment_celltype_v019=CL:0000147;1.21e-50;14!CL:0000148;1.16e-38;10!CL:0000149;5.35e-24;4!CL:0002567;1.99e-19;3!CL:0000453;3.48e-19;5!CL:0000710;9.79e-19;20!CL:0002586;4.29e-18;3!CL:0002077;1.78e-17;34!CL:0000075;1.47e-13;27!CL:0000097;4.39e-11;5!CL:0000990;9.86e-11;8!CL:0000451;8.42e-09;10!CL:0002566;1.06e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000147,1.16e-50,14;CL:0000148,1.16e-38,10;CL:0000541,1.16e-38,10;CL:0000149,5.04e-24,4;CL:0002077,1.88e-19,34;CL:0002567,1.99e-19,3;CL:0000453,3.32e-19,5;CL:0000710,9.80e-19,20;CL:0002586,4.04e-18,3;CL:0000075,1.47e-13,27;CL:0000097,4.32e-11,5;CL:0002028,4.32e-11,5;CL:0000990,9.62e-11,8;CL:0000451,8.25e-09,10;CL:0000333,4.69e-08,41;CL:0000221,7.96e-08,72;CL:0002566,1.06e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.56e-08;3!UBERON:0003057;1.56e-08;3!UBERON:0004874;2.67e-07;1!UBERON:0000358;3.85e-07;1 | |ontology_enrichment_development_v019=UBERON:0006241;1.56e-08;3!UBERON:0003057;1.56e-08;3!UBERON:0004874;2.67e-07;1!UBERON:0000358;3.85e-07;1 | ||
|ontology_enrichment_disease=DOID:1909!1.59e-08!2 | |ontology_enrichment_disease=DOID:1909!1.59e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;2.26e-13;2 | |ontology_enrichment_disease_v019=DOID:1909;2.26e-13;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,2.26e-13,2 | |||
|ontology_enrichment_uberon=UBERON:0000966!9.01e-12!5;UBERON:0005388!9.01e-12!5;UBERON:0001802!9.01e-12!5;UBERON:0001781!2.52e-11!3;UBERON:0001782!2.52e-11!3;UBERON:0005424!2.52e-11!3;UBERON:0002240!5.97e-11!3;UBERON:0000020!1.44e-10!23;UBERON:0001032!4.68e-10!24;UBERON:0004456!4.68e-10!24;UBERON:0000970!6.43e-10!20;UBERON:0002104!2.22e-09!21;UBERON:0000019!5.14e-08!19;UBERON:0000047!5.14e-08!19;UBERON:0004088!5.14e-08!19;UBERON:0003072!5.14e-08!19;UBERON:0003071!5.14e-08!19;UBERON:0004128!5.14e-08!19;UBERON:0007625!1.32e-07!11;UBERON:0003076!1.96e-07!15;UBERON:0003057!1.96e-07!15;UBERON:0001456!3.73e-07!21 | |ontology_enrichment_uberon=UBERON:0000966!9.01e-12!5;UBERON:0005388!9.01e-12!5;UBERON:0001802!9.01e-12!5;UBERON:0001781!2.52e-11!3;UBERON:0001782!2.52e-11!3;UBERON:0005424!2.52e-11!3;UBERON:0002240!5.97e-11!3;UBERON:0000020!1.44e-10!23;UBERON:0001032!4.68e-10!24;UBERON:0004456!4.68e-10!24;UBERON:0000970!6.43e-10!20;UBERON:0002104!2.22e-09!21;UBERON:0000019!5.14e-08!19;UBERON:0000047!5.14e-08!19;UBERON:0004088!5.14e-08!19;UBERON:0003072!5.14e-08!19;UBERON:0003071!5.14e-08!19;UBERON:0004128!5.14e-08!19;UBERON:0007625!1.32e-07!11;UBERON:0003076!1.96e-07!15;UBERON:0003057!1.96e-07!15;UBERON:0001456!3.73e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;4.01e-19;5!UBERON:0005388;4.01e-19;5!UBERON:0001802;4.01e-19;5!UBERON:0001781;4.29e-18;3!UBERON:0001782;4.29e-18;3!UBERON:0010371;1.24e-10;31!UBERON:0000970;4.39e-10;20!UBERON:0001003;9.38e-10;15!UBERON:0007376;9.38e-10;15!UBERON:0002104;1.41e-09;21!UBERON:0000020;1.07e-08;23!UBERON:0002240;1.56e-08;3!UBERON:0005174;1.56e-08;3!UBERON:0001137;1.56e-08;3!UBERON:0001032;2.61e-08;24!UBERON:0004456;2.61e-08;24!UBERON:0000019;1.65e-07;19!UBERON:0000047;1.65e-07;19!UBERON:0004088;1.65e-07;19!UBERON:0010230;1.65e-07;19!UBERON:0007029;2.37e-07;1!UBERON:0000989;2.67e-07;1!UBERON:0008811;2.67e-07;1!UBERON:0001456;9.01e-07;21 | |ontology_enrichment_uberon_v019=UBERON:0000966;4.01e-19;5!UBERON:0005388;4.01e-19;5!UBERON:0001802;4.01e-19;5!UBERON:0001781;4.29e-18;3!UBERON:0001782;4.29e-18;3!UBERON:0010371;1.24e-10;31!UBERON:0000970;4.39e-10;20!UBERON:0001003;9.38e-10;15!UBERON:0007376;9.38e-10;15!UBERON:0002104;1.41e-09;21!UBERON:0000020;1.07e-08;23!UBERON:0002240;1.56e-08;3!UBERON:0005174;1.56e-08;3!UBERON:0001137;1.56e-08;3!UBERON:0001032;2.61e-08;24!UBERON:0004456;2.61e-08;24!UBERON:0000019;1.65e-07;19!UBERON:0000047;1.65e-07;19!UBERON:0004088;1.65e-07;19!UBERON:0010230;1.65e-07;19!UBERON:0007029;2.37e-07;1!UBERON:0000989;2.67e-07;1!UBERON:0008811;2.67e-07;1!UBERON:0001456;9.01e-07;21 | ||
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|short_description=p1@MLANA | |short_description=p1@MLANA | ||
}} | }} |
Latest revision as of 14:08, 17 September 2015
Short description: | p1@MLANA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MLANA_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | -5bp_to_ENST00000381476_5end |
EntrezGene: | MLANA |
HGNC: | 7124 |
UniProt: | Q16655 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 1.16e-50 | 14 |
melanocyte | 1.16e-38 | 10 |
melanoblast | 1.16e-38 | 10 |
visual pigment cell | 5.04e-24 | 4 |
ecto-epithelial cell | 1.88e-19 | 34 |
light melanocyte | 1.99e-19 | 3 |
Langerhans cell | 3.32e-19 | 5 |
neurecto-epithelial cell | 9.80e-19 | 20 |
retinal pigment epithelial cell | 4.04e-18 | 3 |
columnar/cuboidal epithelial cell | 1.47e-13 | 27 |
mast cell | 4.32e-11 | 5 |
basophil mast progenitor cell | 4.32e-11 | 5 |
conventional dendritic cell | 9.62e-11 | 8 |
dendritic cell | 8.25e-09 | 10 |
migratory neural crest cell | 4.69e-08 | 41 |
ectodermal cell | 7.96e-08 | 72 |
dark melanocyte | 1.06e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 4.04e-18 | 3 |
presumptive retinal pigmented epithelium | 4.04e-18 | 3 |
retina | 5.48e-16 | 6 |
photoreceptor array | 5.48e-16 | 6 |
posterior segment of eyeball | 5.48e-16 | 6 |
layer of retina | 9.85e-14 | 4 |
skin epidermis | 9.93e-10 | 15 |
outer epithelium | 9.93e-10 | 15 |
enveloping layer of ectoderm | 9.93e-10 | 15 |
eye | 1.41e-09 | 21 |
visual system | 1.41e-09 | 21 |
spinal cord | 1.56e-08 | 3 |
dorsal region element | 1.56e-08 | 3 |
dorsum | 1.56e-08 | 3 |
sense organ | 2.61e-08 | 24 |
sensory system | 2.61e-08 | 24 |
entire sense organ system | 2.61e-08 | 24 |
surface | 2.37e-07 | 1 |
penis | 2.67e-07 | 1 |
intromittent organ | 2.67e-07 | 1 |
lateral plate mesenchyme | 2.67e-07 | 1 |
undifferentiated genital tubercle | 2.67e-07 | 1 |
somatopleure | 2.67e-07 | 1 |
camera-type eye | 4.02e-07 | 20 |
simple eye | 4.02e-07 | 20 |
immature eye | 4.02e-07 | 20 |
ocular region | 4.02e-07 | 20 |
eyeball of camera-type eye | 4.02e-07 | 20 |
optic cup | 4.02e-07 | 20 |
optic vesicle | 4.02e-07 | 20 |
eye primordium | 4.02e-07 | 20 |
ecto-epithelium | 8.30e-07 | 104 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.26e-13 | 2 |