FFCP PHASE1:Hg19::chr19:45449228..45449235,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=344 | |EntrezGene=344 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=609 | |HGNC=609 | ||
|TSSclassifier=strong | |||
|UniProt=P02655 | |UniProt=P02655 | ||
|association_with_transcript=-3bp_to_NM_000483_5end | |association_with_transcript=-3bp_to_NM_000483_5end | ||
|cluster_id=chr19:45449228..45449235,+ | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_3_at_APOC2_5end | |description=CAGE_peak_3_at_APOC2_5end | ||
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|ontology_enrichment_celltype=CL:0000990!3.46e-14!8;CL:0000451!2.70e-11!10;CL:0000453!5.94e-11!5;CL:0000840!1.18e-08!5;CL:0001029!1.18e-08!5;CL:0000181!1.72e-08!12;CL:0000417!1.72e-08!12;CL:0000668!1.72e-08!12;CL:0000414!1.72e-08!12;CL:0000412!1.72e-08!12;CL:0000182!1.72e-08!12;CL:0000763!2.63e-08!112;CL:0000049!2.63e-08!112;CL:0000235!2.17e-07!10 | |ontology_enrichment_celltype=CL:0000990!3.46e-14!8;CL:0000451!2.70e-11!10;CL:0000453!5.94e-11!5;CL:0000840!1.18e-08!5;CL:0001029!1.18e-08!5;CL:0000181!1.72e-08!12;CL:0000417!1.72e-08!12;CL:0000668!1.72e-08!12;CL:0000414!1.72e-08!12;CL:0000412!1.72e-08!12;CL:0000182!1.72e-08!12;CL:0000763!2.63e-08!112;CL:0000049!2.63e-08!112;CL:0000235!2.17e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000235;9.66e-22;6!CL:0000453;1.66e-16;5!CL:0000182;4.61e-16;12!CL:0000990;6.62e-14;8!CL:0000451;2.44e-11;10 | |ontology_enrichment_celltype_v019=CL:0000235;9.66e-22;6!CL:0000453;1.66e-16;5!CL:0000182;4.61e-16;12!CL:0000990;6.62e-14;8!CL:0000451;2.44e-11;10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000235,1.43e-21,6;CL:0000453,1.67e-16,5;CL:0000182,4.50e-16,12;CL:0000990,7.83e-14,8;CL:0000763,1.08e-12,108;CL:0000049,1.08e-12,108;CL:0000451,2.79e-11,10;CL:0002032,3.15e-07,161;CL:0000837,3.15e-07,161;CL:0000037,9.06e-07,168 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.09e-12;11!UBERON:0009497;1.89e-10;13 | |ontology_enrichment_development_v019=UBERON:0004161;2.09e-12;11!UBERON:0009497;1.89e-10;13 | ||
|ontology_enrichment_disease=DOID:8692!1.47e-08!31 | |ontology_enrichment_disease=DOID:8692!1.47e-08!31 | ||
|ontology_enrichment_disease_v019=DOID:8692;1.03e-11;31!DOID:1240;4.90e-07;39 | |ontology_enrichment_disease_v019=DOID:8692;1.03e-11;31!DOID:1240;4.90e-07;39 | ||
|ontology_enrichment_disease_v019_2=DOID:8692,6.59e-12,31;DOID:1240,3.72e-09,39 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.73e-39!57;UBERON:0005068!2.73e-39!57;UBERON:0006241!2.73e-39!57;UBERON:0007135!2.73e-39!57;UBERON:0002616!5.42e-33!59;UBERON:0002780!6.22e-30!41;UBERON:0001890!6.22e-30!41;UBERON:0006240!6.22e-30!41;UBERON:0003080!4.91e-29!42;UBERON:0007023!6.70e-29!115;UBERON:0001017!4.46e-28!82;UBERON:0000955!6.36e-28!69;UBERON:0006238!6.36e-28!69;UBERON:0005743!3.01e-26!86;UBERON:0002020!1.06e-24!34;UBERON:0003528!1.06e-24!34;UBERON:0001893!1.72e-24!34;UBERON:0003075!9.92e-24!86;UBERON:0007284!9.92e-24!86;UBERON:0002791!2.64e-23!33;UBERON:0000073!1.07e-22!94;UBERON:0001016!1.07e-22!94;UBERON:0002346!3.48e-22!90;UBERON:0001869!1.38e-21!32;UBERON:0003056!1.45e-17!61;UBERON:0002619!9.73e-17!22;UBERON:0000956!2.52e-14!25;UBERON:0000203!2.52e-14!25;UBERON:0001950!6.21e-14!20;UBERON:0002308!5.19e-13!9;UBERON:0000125!5.19e-13!9;UBERON:0000033!3.07e-12!123;UBERON:0000153!5.53e-12!129;UBERON:0007811!5.53e-12!129;UBERON:0000025!1.43e-11!194;UBERON:0002298!2.20e-11!8;UBERON:0003076!3.59e-11!15;UBERON:0003057!3.59e-11!15;UBERON:0000200!1.66e-10!6;UBERON:0002420!2.86e-10!9;UBERON:0007245!2.86e-10!9;UBERON:0010009!2.86e-10!9;UBERON:0010011!2.86e-10!9;UBERON:0000454!2.86e-10!9;UBERON:0009663!6.31e-10!7;UBERON:0004121!2.31e-09!169;UBERON:0004733!4.71e-09!12;UBERON:0002028!4.71e-09!12;UBERON:0007277!4.71e-09!12;UBERON:0000924!6.51e-09!173;UBERON:0006601!6.51e-09!173;UBERON:0004732!3.04e-08!13;UBERON:0002107!3.35e-08!19;UBERON:0006925!3.35e-08!19;UBERON:0008836!3.35e-08!19;UBERON:0005057!9.38e-08!26;UBERON:0004111!1.55e-07!241;UBERON:0002405!3.01e-07!115;UBERON:0001894!7.58e-07!7;UBERON:0006222!7.58e-07!7;UBERON:0008835!8.40e-07!22;UBERON:0003894!8.40e-07!22;UBERON:0001896!8.93e-07!3;UBERON:0005290!8.93e-07!3;UBERON:0010096!8.93e-07!3 | |ontology_enrichment_uberon=UBERON:0001049!2.73e-39!57;UBERON:0005068!2.73e-39!57;UBERON:0006241!2.73e-39!57;UBERON:0007135!2.73e-39!57;UBERON:0002616!5.42e-33!59;UBERON:0002780!6.22e-30!41;UBERON:0001890!6.22e-30!41;UBERON:0006240!6.22e-30!41;UBERON:0003080!4.91e-29!42;UBERON:0007023!6.70e-29!115;UBERON:0001017!4.46e-28!82;UBERON:0000955!6.36e-28!69;UBERON:0006238!6.36e-28!69;UBERON:0005743!3.01e-26!86;UBERON:0002020!1.06e-24!34;UBERON:0003528!1.06e-24!34;UBERON:0001893!1.72e-24!34;UBERON:0003075!9.92e-24!86;UBERON:0007284!9.92e-24!86;UBERON:0002791!2.64e-23!33;UBERON:0000073!1.07e-22!94;UBERON:0001016!1.07e-22!94;UBERON:0002346!3.48e-22!90;UBERON:0001869!1.38e-21!32;UBERON:0003056!1.45e-17!61;UBERON:0002619!9.73e-17!22;UBERON:0000956!2.52e-14!25;UBERON:0000203!2.52e-14!25;UBERON:0001950!6.21e-14!20;UBERON:0002308!5.19e-13!9;UBERON:0000125!5.19e-13!9;UBERON:0000033!3.07e-12!123;UBERON:0000153!5.53e-12!129;UBERON:0007811!5.53e-12!129;UBERON:0000025!1.43e-11!194;UBERON:0002298!2.20e-11!8;UBERON:0003076!3.59e-11!15;UBERON:0003057!3.59e-11!15;UBERON:0000200!1.66e-10!6;UBERON:0002420!2.86e-10!9;UBERON:0007245!2.86e-10!9;UBERON:0010009!2.86e-10!9;UBERON:0010011!2.86e-10!9;UBERON:0000454!2.86e-10!9;UBERON:0009663!6.31e-10!7;UBERON:0004121!2.31e-09!169;UBERON:0004733!4.71e-09!12;UBERON:0002028!4.71e-09!12;UBERON:0007277!4.71e-09!12;UBERON:0000924!6.51e-09!173;UBERON:0006601!6.51e-09!173;UBERON:0004732!3.04e-08!13;UBERON:0002107!3.35e-08!19;UBERON:0006925!3.35e-08!19;UBERON:0008836!3.35e-08!19;UBERON:0005057!9.38e-08!26;UBERON:0004111!1.55e-07!241;UBERON:0002405!3.01e-07!115;UBERON:0001894!7.58e-07!7;UBERON:0006222!7.58e-07!7;UBERON:0008835!8.40e-07!22;UBERON:0003894!8.40e-07!22;UBERON:0001896!8.93e-07!3;UBERON:0005290!8.93e-07!3;UBERON:0010096!8.93e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.89e-17;19!UBERON:0006925;1.89e-17;19!UBERON:0002423;6.02e-13;25!UBERON:0001897;6.42e-11;2!UBERON:0010225;6.42e-11;2!UBERON:0002365;7.71e-10;31!UBERON:0002330;7.71e-10;31!UBERON:0002420;5.06e-09;9!UBERON:0007245;5.06e-09;9!UBERON:0010009;5.06e-09;9!UBERON:0010011;5.06e-09;9!UBERON:0000454;5.06e-09;9!UBERON:0002368;1.09e-08;33!UBERON:0009663;6.31e-07;7 | |ontology_enrichment_uberon_v019=UBERON:0002107;1.89e-17;19!UBERON:0006925;1.89e-17;19!UBERON:0002423;6.02e-13;25!UBERON:0001897;6.42e-11;2!UBERON:0010225;6.42e-11;2!UBERON:0002365;7.71e-10;31!UBERON:0002330;7.71e-10;31!UBERON:0002420;5.06e-09;9!UBERON:0007245;5.06e-09;9!UBERON:0010009;5.06e-09;9!UBERON:0010011;5.06e-09;9!UBERON:0000454;5.06e-09;9!UBERON:0002368;1.09e-08;33!UBERON:0009663;6.31e-07;7 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.85e-17,19;UBERON:0006925,1.85e-17,19;UBERON:0008836,1.85e-17,19;UBERON:0008835,6.72e-15,22;UBERON:0003894,6.72e-15,22;UBERON:0009854,3.41e-14,23;UBERON:0007499,5.93e-13,25;UBERON:0009497,5.93e-13,25;UBERON:0000015,5.93e-13,25;UBERON:0002423,5.93e-13,25;UBERON:0006235,5.93e-13,25;UBERON:0004161,5.93e-13,25;UBERON:0009856,2.10e-12,26;UBERON:0001897,5.23e-11,2;UBERON:0010225,5.23e-11,2;UBERON:0002365,3.42e-10,31;UBERON:0002330,3.42e-10,31;UBERON:0002420,6.15e-09,9;UBERON:0007245,6.15e-09,9;UBERON:0010009,6.15e-09,9;UBERON:0010011,6.15e-09,9;UBERON:0000454,6.15e-09,9;UBERON:0002368,7.04e-09,35;UBERON:0009663,7.62e-07,7 | |||
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| ||
|short_description=p3@APOC2 | |short_description=p3@APOC2 | ||
}} | }} |
Latest revision as of 15:06, 18 September 2015
Short description: | p3@APOC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_APOC2_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -3bp_to_NM_000483_5end |
EntrezGene: | APOC2 |
HGNC: | 609 |
UniProt: | P02655 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 1.43e-21 | 6 |
Langerhans cell | 1.67e-16 | 5 |
hepatocyte | 4.50e-16 | 12 |
conventional dendritic cell | 7.83e-14 | 8 |
myeloid cell | 1.08e-12 | 108 |
common myeloid progenitor | 1.08e-12 | 108 |
dendritic cell | 2.79e-11 | 10 |
hematopoietic oligopotent progenitor cell | 3.15e-07 | 161 |
hematopoietic multipotent progenitor cell | 3.15e-07 | 161 |
hematopoietic stem cell | 9.06e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
liver | 1.85e-17 | 19 |
digestive gland | 1.85e-17 | 19 |
liver bud | 1.85e-17 | 19 |
hepatic diverticulum | 6.72e-15 | 22 |
liver primordium | 6.72e-15 | 22 |
digestive tract diverticulum | 3.41e-14 | 23 |
epithelial sac | 5.93e-13 | 25 |
epithelium of foregut-midgut junction | 5.93e-13 | 25 |
anatomical boundary | 5.93e-13 | 25 |
hepatobiliary system | 5.93e-13 | 25 |
foregut-midgut junction | 5.93e-13 | 25 |
septum transversum | 5.93e-13 | 25 |
sac | 2.10e-12 | 26 |
dorsal plus ventral thalamus | 5.23e-11 | 2 |
thalamic complex | 5.23e-11 | 2 |
exocrine gland | 3.42e-10 | 31 |
exocrine system | 3.42e-10 | 31 |
basal ganglion | 6.15e-09 | 9 |
nuclear complex of neuraxis | 6.15e-09 | 9 |
aggregate regional part of brain | 6.15e-09 | 9 |
collection of basal ganglia | 6.15e-09 | 9 |
cerebral subcortex | 6.15e-09 | 9 |
endocrine gland | 7.04e-09 | 35 |
telencephalic nucleus | 7.62e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 6.59e-12 | 31 |
leukemia | 3.72e-09 | 39 |