FFCP PHASE1:Hg19::chr22:31608307..31608316,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr22:31608307..31608316,+
|short_description=p5@LIMK2
|description=CAGE_peak_5_at_LIMK2_5end
|association_with_transcript=26bp_to_ENST00000331728_5end
|Entrez...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3985 | |EntrezGene=3985 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6614 | |HGNC=6614 | ||
|TSSclassifier=strong | |||
|UniProt=P53671 | |UniProt=P53671 | ||
|association_with_transcript=26bp_to_ENST00000331728_5end | |||
|cluster_id=chr22:31608307..31608316,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_5_at_LIMK2_5end | |||
|id=chr22:31608307..31608316,+ | |||
|ontology_enrichment_celltype=CL:0000860!4.28e-17!45;CL:0002057!4.68e-17!42;CL:0002139!1.36e-13!24;CL:0000766!2.09e-13!76;CL:0000115!3.95e-13!35;CL:0002078!1.00e-11!44;CL:0000071!3.93e-11!18;CL:0002546!3.93e-11!18;CL:0002194!2.93e-10!63;CL:0000576!2.93e-10!63;CL:0000040!2.93e-10!63;CL:0000559!2.93e-10!63;CL:0002009!1.26e-09!65;CL:0000839!1.45e-09!70;CL:0000557!2.02e-09!71;CL:0000213!3.18e-08!57;CL:0000215!3.18e-08!57;CL:0000763!3.12e-07!112;CL:0000049!3.12e-07!112;CL:0000738!3.37e-07!140;CL:0000094!4.05e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.98e-21;33!CL:0002057;3.98e-21;33!CL:0000775;2.48e-17;3!CL:0000094;2.64e-17;8!CL:0000473;3.06e-15;39!CL:0000234;3.06e-15;39!CL:0000576;9.16e-13;48!CL:0000081;1.65e-12;11!CL:0000771;2.84e-12;2!CL:0000766;2.50e-09;69!CL:0002144;9.71e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.84e-22,72;CL:0000860,1.79e-21,42;CL:0002057,1.79e-21,42;CL:0000473,2.07e-18,48;CL:0000234,2.07e-18,48;CL:0000775,2.48e-17,3;CL:0000094,2.64e-17,8;CL:0000763,6.08e-15,108;CL:0000049,6.08e-15,108;CL:0002194,3.95e-14,59;CL:0000576,3.95e-14,59;CL:0000040,3.95e-14,59;CL:0000559,3.95e-14,59;CL:0000557,5.31e-14,67;CL:0002009,1.41e-13,61;CL:0000081,1.65e-12,11;CL:0000839,2.42e-12,66;CL:0000771,2.84e-12,2;CL:0000738,2.93e-12,136;CL:0000037,3.83e-10,168;CL:0002032,1.13e-09,161;CL:0000837,1.13e-09,161;CL:0000988,2.17e-09,177;CL:0002087,5.64e-08,115;CL:0002144,8.48e-08,3 | |||
|ontology_enrichment_development_v019=CL:0002057;9.70e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.13e-12!112;UBERON:0002390!1.00e-11!102;UBERON:0003061!1.00e-11!102;UBERON:0002405!1.13e-11!115;UBERON:0001986!3.93e-11!18;UBERON:0004638!3.93e-11!18;UBERON:0004852!3.93e-11!18;UBERON:0003081!6.42e-09!216;UBERON:0000487!3.32e-08!22;UBERON:0006914!1.44e-07!25;UBERON:0002371!3.26e-07!80;UBERON:0001474!5.38e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.45e-16;15!UBERON:0000179;3.45e-16;15!UBERON:0000463;3.45e-16;15!UBERON:0002390;2.14e-09;32!UBERON:0010523;9.71e-08;3!UBERON:0001915;9.71e-08;3!UBERON:0001982;9.71e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.65e-20,98;UBERON:0003061,1.65e-20,98;UBERON:0002193,3.55e-18,108;UBERON:0000178,4.36e-16,15;UBERON:0000179,4.36e-16,15;UBERON:0000463,4.36e-16,15;UBERON:0003081,7.47e-14,203;UBERON:0002371,5.46e-12,76;UBERON:0001474,6.81e-11,82;UBERON:0004765,1.17e-09,90;UBERON:0002405,2.99e-09,93;UBERON:0001434,2.14e-08,100;UBERON:0010523,8.48e-08,3;UBERON:0001915,8.48e-08,3;UBERON:0001982,8.48e-08,3;UBERON:0000926,7.53e-07,315;UBERON:0004120,7.53e-07,315;UBERON:0006603,7.53e-07,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410623275218653,0.251085279189606,0,0.0821005894499457,0.0787107813136792,0.393364276848904,0,0.154816123316076,0,0,0,0.154934401160603,0,0,1.10799081706375,0,0.434021741431704,0,0,0.257575567634187,0,0,0,0.697287110717054,0.411167888021826,0.929119112685311,6.32923263108731,5.37937483711111,6.14853797710322,0.344745680736619,0,1.35426486594342,0.188242339542605,0.272906150057846,1.79778787556068,0.918251677112708,0.962787081228281,0.639337125799041,2.63881040149373,3.98927315243264,8.09827026012119,0.870627715885752,0.56738522469114,2.4912889959823,2.00998932205395,3.12889751052121,3.25783267057675,0.605399502633369,0.368277635987565,2.21523671208619,0,0,0,0.112328631146495,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0.130059347559878,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0.236777252044017,0,0,0.267440195783507,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.0654895377488563,0,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,1.38856200643038,0,0,0.825354125820202,0.626984899610432,0.258416759169329,0.35576626268671,0.66944122552934,0.805658634218294,1.52054421143703,2.4406205754817,0.735326160691737,0.81014194788176,0.446498641420399,0.22452937262617,0.225222960966644,1.53316637465883,0.949265659568129,0.916008719652036,31.6273001846552,19.3890132074163,0,0,0,0,0.286836620748814,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0.337552664482532,0.0974370051611986,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,0,0,1.26755034821831,0.982827216677626,0.590789906681404,0.441463099414651,0,0,0,0,0,0,0,0,0,0.34779121492523,0.117408694235822,0.288732895522148,0,0.190254152234598,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0.176096868026452,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0.167516265334349,0,7.49007023947182,11.966458368161,17.4054515643135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07857100409308,0.106727557803444,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,1.46139224653261,0,1.13733384070897,0,0.431831832204279,0,0,0,0,0.831076008928724,0,0,0.261435451024901,0,0.328014645699706,0.325378394664303,0.206082023295445,0,0.247528499761764,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,3.04468565539302,3.0585488285695,2.27858874869665,0.238231775457789,0.822724546172388,1.29694662238543,2.70015718619057,6.34500141035416,0.320472213382419,0,0,0.185803175125719,0,0,0.478278818186467,0,0,0.211673582723883,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0.37428108081644,0.293016358543788,0,0,0,0,0,0,0,0,0.111308705022906,1.15362711958732,0.211125408127993,0.19924798825107,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.063186579628488,0.450970258243478,0.103688191397247,0,0,0,0,0.284609546029793,0,0.173559738335131,0,0,0,0,0.0967563312890851,0,0.0821154570532092,0,0.0882561266915003,0.225980740780532,0,0,0,0,0,0.213452994739353,0,0.432271251462318,0,0,0,0,0,0,0,0,0.288950589901519,0,0.136905378891993,1.27746588066972,0,0,0,0,0.717873024576814,0.199679000498991,0,0.223171457441873,0.0671834724867263,0,0,0.551482276150566,0.906574442192831,0.741438982396034,0.0984274815147488,0.254019996197353,0,0,0,0.687697182986169,0,0,0,0,0.335434687599266,0,0.0524545881349981,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0.58620893471233,0,0.129282956361551,0.39669780522807,0,0,0.320362237703084,0.157204305099666,0.414239055347196,0,0,0,0,1.63205341010842,0.2506898940227,0.612691153526923,0,0,0,0,0,0,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0.260994291965212,0.226705925512272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0.127894371303652,0,0.157265941855896,0.109209638192014,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0.147856086217045,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0.131545547125698,0,0,0.078493092850514,0,0,0.913158720509496,0,0,0.142953088353313,0.316027223465453,0,0,0,0,0,0,0,0,0.0852134047591577,0,0.22910686854405,0,0,0,0.098150233615243,0.609589624911347,0.647428837187895,0.102662806856247,0,0,0.233939463462106,0.397901550322736,0,0.11294608203896,0,0.452888530700021,0.385870790539723,0,0.470317296361523,0,0,0,0,0,0,0.187967835959707,0.0644578879735772,0,0,0,0,1.46067277649303,0.458729283404541,0,0.157771562193185,0,0,0,0,0,0,0,0,0.126698501011437,0,0.26721740526556,0,0,0.151557396436479,0,0,0,0,0.23806443146374,0.258355639344024,0.248298857183432,0.112131862580613,0,0.202117188958219,0,0,0,0.286888821570705,0.665320713092027,0.244209805832924,0,1.9307228228694,0,0,0,0.406896178315738,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410623275218653,0.251085279189606,0,0.0821005894499457,0.0787107813136792,0.393364276848904,0,0.154816123316076,0,0,0,0.154934401160603,0,0,1.10799081706375,0,0.434021741431704,0,0,0.257575567634187,0,0,0,0.697287110717054,0.411167888021826,0.929119112685311,6.32923263108731,5.37937483711111,6.14853797710322,0.344745680736619,0,1.35426486594342,0.188242339542605,0.272906150057846,1.79778787556068,0.918251677112708,0.962787081228281,0.639337125799041,2.63881040149373,3.98927315243264,8.09827026012119,0.870627715885752,0.56738522469114,2.4912889959823,2.00998932205395,3.12889751052121,3.25783267057675,0.605399502633369,0.368277635987565,2.21523671208619,0,0,0,0.112328631146495,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0.130059347559878,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0.236777252044017,0,0,0.267440195783507,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.0654895377488563,0,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,1.38856200643038,0,0,0.825354125820202,0.626984899610432,0.258416759169329,0.35576626268671,0.66944122552934,0.805658634218294,1.52054421143703,2.4406205754817,0.735326160691737,0.81014194788176,0.446498641420399,0.22452937262617,0.225222960966644,1.53316637465883,0.949265659568129,0.916008719652036,31.6273001846552,19.3890132074163,0,0,0,0,0.286836620748814,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0.337552664482532,0.0974370051611986,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,0,0,1.26755034821831,0.982827216677626,0.590789906681404,0.441463099414651,0,0,0,0,0,0,0,0,0,0.34779121492523,0.117408694235822,0.288732895522148,0,0.190254152234598,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0.176096868026452,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0.167516265334349,0,7.49007023947182,11.966458368161,17.4054515643135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07857100409308,0.106727557803444,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,1.46139224653261,0,1.13733384070897,0,0.431831832204279,0,0,0,0,0.831076008928724,0,0,0.261435451024901,0,0.328014645699706,0.325378394664303,0.206082023295445,0,0.247528499761764,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,3.04468565539302,3.0585488285695,2.27858874869665,0.238231775457789,0.822724546172388,1.29694662238543,2.70015718619057,6.34500141035416,0.320472213382419,0,0,0.185803175125719,0,0,0.478278818186467,0,0,0.211673582723883,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0.37428108081644,0.293016358543788,0,0,0,0,0,0,0,0,0.111308705022906,1.15362711958732,0.211125408127993,0.19924798825107,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.063186579628488,0.450970258243478,0.103688191397247,0,0,0,0,0.284609546029793,0,0.173559738335131,0,0,0,0,0.0967563312890851,0,0.0821154570532092,0,0.0882561266915003,0.225980740780532,0,0,0,0,0,0.213452994739353,0,0.432271251462318,0,0,0,0,0,0,0,0,0.288950589901519,0,0.136905378891993,1.27746588066972,0,0,0,0,0.717873024576814,0.199679000498991,0,0.223171457441873,0.0671834724867263,0,0,0.551482276150566,0.906574442192831,0.741438982396034,0.0984274815147488,0.254019996197353,0,0,0,0.687697182986169,0,0,0,0,0.335434687599266,0,0.0524545881349981,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0.58620893471233,0,0.129282956361551,0.39669780522807,0,0,0.320362237703084,0.157204305099666,0.414239055347196,0,0,0,0,1.63205341010842,0.2506898940227,0.612691153526923,0,0,0,0,0,0,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0.260994291965212,0.226705925512272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0.127894371303652,0,0.157265941855896,0.109209638192014,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0.147856086217045,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0.131545547125698,0,0,0.078493092850514,0,0,0.913158720509496,0,0,0.142953088353313,0.316027223465453,0,0,0,0,0,0,0,0,0.0852134047591577,0,0.22910686854405,0,0,0,0.098150233615243,0.609589624911347,0.647428837187895,0.102662806856247,0,0,0.233939463462106,0.397901550322736,0,0.11294608203896,0,0.452888530700021,0.385870790539723,0,0.470317296361523,0,0,0,0,0,0,0.187967835959707,0.0644578879735772,0,0,0,0,1.46067277649303,0.458729283404541,0,0.157771562193185,0,0,0,0,0,0,0,0,0.126698501011437,0,0.26721740526556,0,0,0.151557396436479,0,0,0,0,0.23806443146374,0.258355639344024,0.248298857183432,0.112131862580613,0,0.202117188958219,0,0,0,0.286888821570705,0.665320713092027,0.244209805832924,0,1.9307228228694,0,0,0,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p5@LIMK2 | |||
}} | }} |
Latest revision as of 19:48, 19 September 2015
Short description: | p5@LIMK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LIMK2_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 26bp_to_ENST00000331728_5end |
EntrezGene: | LIMK2 |
HGNC: | 6614 |
UniProt: | P53671 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.84e-22 | 72 |
classical monocyte | 1.79e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.79e-21 | 42 |
defensive cell | 2.07e-18 | 48 |
phagocyte | 2.07e-18 | 48 |
neutrophil | 2.48e-17 | 3 |
granulocyte | 2.64e-17 | 8 |
myeloid cell | 6.08e-15 | 108 |
common myeloid progenitor | 6.08e-15 | 108 |
monopoietic cell | 3.95e-14 | 59 |
monocyte | 3.95e-14 | 59 |
monoblast | 3.95e-14 | 59 |
promonocyte | 3.95e-14 | 59 |
granulocyte monocyte progenitor cell | 5.31e-14 | 67 |
macrophage dendritic cell progenitor | 1.41e-13 | 61 |
blood cell | 1.65e-12 | 11 |
myeloid lineage restricted progenitor cell | 2.42e-12 | 66 |
eosinophil | 2.84e-12 | 2 |
leukocyte | 2.93e-12 | 136 |
hematopoietic stem cell | 3.83e-10 | 168 |
hematopoietic oligopotent progenitor cell | 1.13e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.13e-09 | 161 |
hematopoietic cell | 2.17e-09 | 177 |
nongranular leukocyte | 5.64e-08 | 115 |
capillary endothelial cell | 8.48e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.65e-20 | 98 |
blood island | 1.65e-20 | 98 |
hemolymphoid system | 3.55e-18 | 108 |
blood | 4.36e-16 | 15 |
haemolymphatic fluid | 4.36e-16 | 15 |
organism substance | 4.36e-16 | 15 |
lateral plate mesoderm | 7.47e-14 | 203 |
bone marrow | 5.46e-12 | 76 |
bone element | 6.81e-11 | 82 |
skeletal element | 1.17e-09 | 90 |
immune system | 2.99e-09 | 93 |
skeletal system | 2.14e-08 | 100 |
microcirculatory vessel | 8.48e-08 | 3 |
endothelium of capillary | 8.48e-08 | 3 |
capillary | 8.48e-08 | 3 |
mesoderm | 7.53e-07 | 315 |
mesoderm-derived structure | 7.53e-07 | 315 |
presumptive mesoderm | 7.53e-07 | 315 |