FFCP PHASE1:Hg19::chr2:55845029..55845079,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:55845029..55845079,+
|short_description=p@chr2:55845029..55845079,+
|description=CAGE_peak_at_chr2:55845029..55845079,+
|association_with_transcript=NA
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:55845029..55845079,+ | |||
|coexpression_cluster_id=C1704 | |||
|description=CAGE_peak_at_chr2:55845029..55845079,+ | |||
|id=chr2:55845029..55845079,+ | |||
|ontology_enrichment_celltype=CL:0000037!5.53e-36!172;CL:0000566!5.53e-36!172;CL:0000988!7.12e-34!182;CL:0002032!1.49e-32!165;CL:0000837!1.49e-32!165;CL:0000738!2.05e-32!140;CL:0002031!4.72e-25!124;CL:0002087!5.36e-24!119;CL:0000542!1.50e-21!53;CL:0000051!1.50e-21!53;CL:0000838!2.14e-21!52;CL:0000763!6.03e-13!112;CL:0000049!6.03e-13!112;CL:0000791!5.19e-12!18;CL:0000789!5.19e-12!18;CL:0002420!5.19e-12!18;CL:0002419!5.19e-12!18;CL:0000790!5.19e-12!18;CL:0000945!8.84e-11!24;CL:0000826!8.84e-11!24;CL:0000084!4.14e-10!25;CL:0000827!4.14e-10!25;CL:0000766!2.96e-09!76;CL:0000236!3.46e-09!14;CL:0000625!3.01e-08!11;CL:0000557!5.90e-07!71;CL:0000839!6.93e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000542;3.56e-13;53!CL:0000791;3.22e-12;18!CL:0000789;3.22e-12;18!CL:0002419;3.22e-12;18!CL:0000945;5.99e-11;24!CL:0000084;4.28e-10;25!CL:0000236;4.72e-09;13!CL:0000625;2.26e-08;11!CL:0002087;1.51e-07;104!CL:0000738;3.14e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,3.40e-36,168;CL:0000988,1.01e-34,177;CL:0002032,9.65e-33,161;CL:0000837,9.65e-33,161;CL:0000738,1.60e-32,136;CL:0002031,4.17e-25,120;CL:0002087,4.71e-24,115;CL:0000542,1.25e-21,53;CL:0000051,1.25e-21,53;CL:0000838,1.79e-21,52;CL:0000763,5.69e-13,108;CL:0000049,5.69e-13,108;CL:0000791,4.72e-12,18;CL:0000789,4.72e-12,18;CL:0002420,4.72e-12,18;CL:0002419,4.72e-12,18;CL:0000790,4.72e-12,18;CL:0000945,8.14e-11,24;CL:0000826,8.14e-11,24;CL:0000084,3.83e-10,25;CL:0000827,3.83e-10,25;CL:0000236,3.23e-09,14;CL:0000766,3.60e-09,72;CL:0000625,2.83e-08,11;CL:0000557,7.77e-07,67;CL:0000839,9.12e-07,66 | |||
|ontology_enrichment_development_v019=CL:0000051;3.56e-13;53!CL:0000790;3.22e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.65e-13!115;UBERON:0002390!4.24e-11!102;UBERON:0003061!4.24e-11!102;UBERON:0002193!5.70e-11!112;UBERON:0001049!9.11e-08!57;UBERON:0005068!9.11e-08!57;UBERON:0006241!9.11e-08!57;UBERON:0007135!9.11e-08!57;UBERON:0002780!1.58e-07!41;UBERON:0001890!1.58e-07!41;UBERON:0006240!1.58e-07!41;UBERON:0000178!6.10e-07!15;UBERON:0000179!6.10e-07!15;UBERON:0000463!6.10e-07!15;UBERON:0003080!7.97e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.26e-07;15!UBERON:0000179;4.26e-07;15!UBERON:0000463;4.26e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.32e-13,114;UBERON:0002390,5.67e-11,98;UBERON:0003061,5.67e-11,98;UBERON:0002193,7.91e-11,108;UBERON:0001049,1.99e-08,56;UBERON:0005068,1.99e-08,56;UBERON:0006241,1.99e-08,56;UBERON:0007135,1.99e-08,56;UBERON:0000073,4.97e-08,53;UBERON:0002616,4.97e-08,53;UBERON:0002780,1.50e-07,41;UBERON:0001890,1.50e-07,41;UBERON:0003080,1.50e-07,41;UBERON:0006240,1.50e-07,41;UBERON:0000178,5.81e-07,15;UBERON:0000179,5.81e-07,15;UBERON:0000463,5.81e-07,15;UBERON:0002405,8.47e-07,93 | |||
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| ||
|short_description=p@chr2:55845029..55845079,+ | |||
}} | }} |
Latest revision as of 10:59, 29 July 2015
Short description: | p@chr2:55845029..55845079, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:55845029..55845079, + |
Coexpression cluster: | C1704_CD4_Dendritic_CD8_CD19_Natural_Basophils_Eosinophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 3.40e-36 | 168 |
hematopoietic cell | 1.01e-34 | 177 |
hematopoietic oligopotent progenitor cell | 9.65e-33 | 161 |
hematopoietic multipotent progenitor cell | 9.65e-33 | 161 |
leukocyte | 1.60e-32 | 136 |
hematopoietic lineage restricted progenitor cell | 4.17e-25 | 120 |
nongranular leukocyte | 4.71e-24 | 115 |
lymphocyte | 1.25e-21 | 53 |
common lymphoid progenitor | 1.25e-21 | 53 |
lymphoid lineage restricted progenitor cell | 1.79e-21 | 52 |
myeloid cell | 5.69e-13 | 108 |
common myeloid progenitor | 5.69e-13 | 108 |
mature alpha-beta T cell | 4.72e-12 | 18 |
alpha-beta T cell | 4.72e-12 | 18 |
immature T cell | 4.72e-12 | 18 |
mature T cell | 4.72e-12 | 18 |
immature alpha-beta T cell | 4.72e-12 | 18 |
lymphocyte of B lineage | 8.14e-11 | 24 |
pro-B cell | 8.14e-11 | 24 |
T cell | 3.83e-10 | 25 |
pro-T cell | 3.83e-10 | 25 |
B cell | 3.23e-09 | 14 |
myeloid leukocyte | 3.60e-09 | 72 |
CD8-positive, alpha-beta T cell | 2.83e-08 | 11 |
granulocyte monocyte progenitor cell | 7.77e-07 | 67 |
myeloid lineage restricted progenitor cell | 9.12e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.32e-13 | 114 |
hematopoietic system | 5.67e-11 | 98 |
blood island | 5.67e-11 | 98 |
hemolymphoid system | 7.91e-11 | 108 |
neural tube | 1.99e-08 | 56 |
neural rod | 1.99e-08 | 56 |
future spinal cord | 1.99e-08 | 56 |
neural keel | 1.99e-08 | 56 |
regional part of nervous system | 4.97e-08 | 53 |
regional part of brain | 4.97e-08 | 53 |
regional part of forebrain | 1.50e-07 | 41 |
forebrain | 1.50e-07 | 41 |
anterior neural tube | 1.50e-07 | 41 |
future forebrain | 1.50e-07 | 41 |
blood | 5.81e-07 | 15 |
haemolymphatic fluid | 5.81e-07 | 15 |
organism substance | 5.81e-07 | 15 |
immune system | 8.47e-07 | 93 |