FFCP PHASE1:Hg19::chr3:133292481..133292542,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:133292481..133292542,+
|short_description=p1@CDV3
|description=CAGE_peak_1_at_CDV3_5end
|association_with_transcript=-31bp_to_ENST00000264993_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55573 | |EntrezGene=55573 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26928 | |HGNC=26928 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UKY7 | |UniProt=Q9UKY7 | ||
|association_with_transcript=-31bp_to_ENST00000264993_5end | |||
|cluster_id=chr3:133292481..133292542,+ | |||
|description=CAGE_peak_1_at_CDV3_5end | |||
|id=chr3:133292481..133292542,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.18e-23!42;CL:0000766!2.53e-23!76;CL:0000860!1.44e-20!45;CL:0002194!1.02e-19!63;CL:0000576!1.02e-19!63;CL:0000040!1.02e-19!63;CL:0000559!1.02e-19!63;CL:0002009!2.83e-19!65;CL:0000763!8.04e-19!112;CL:0000049!8.04e-19!112;CL:0000063!1.22e-18!578;CL:0000839!4.78e-18!70;CL:0000557!5.32e-18!71;CL:0000738!2.04e-15!140;CL:0000548!2.28e-15!679;CL:0000004!2.28e-15!679;CL:0000255!2.28e-15!679;CL:0002032!2.68e-15!165;CL:0000837!2.68e-15!165;CL:0000037!6.98e-15!172;CL:0000566!6.98e-15!172;CL:0000003!9.63e-15!722;CL:0002087!1.69e-14!119;CL:0000012!1.73e-14!682;CL:0000988!4.50e-14!182;CL:0000144!5.90e-13!625;CL:0002031!2.75e-12!124;CL:0002371!3.34e-11!591;CL:0002320!4.31e-11!365;CL:0000134!5.06e-11!358;CL:0000048!4.40e-08!430;CL:0000723!6.78e-08!436;CL:0000034!2.64e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.77e-17;33!CL:0002057;2.77e-17;33!CL:0000473;1.90e-16;39!CL:0000234;1.90e-16;39!CL:0000576;3.83e-14;48!CL:0000766;8.44e-12;69!CL:0000763;9.58e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,8.97e-26,48;CL:0000234,8.97e-26,48;CL:0000766,9.81e-26,72;CL:0000860,1.18e-23,42;CL:0002057,1.18e-23,42;CL:0002194,3.54e-22,59;CL:0000576,3.54e-22,59;CL:0000040,3.54e-22,59;CL:0000559,3.54e-22,59;CL:0002009,1.25e-21,61;CL:0000763,2.38e-20,108;CL:0000049,2.38e-20,108;CL:0000839,3.70e-20,66;CL:0000557,4.39e-20,67;CL:0000738,1.51e-16,136;CL:0002032,2.63e-16,161;CL:0000837,2.63e-16,161;CL:0000037,7.60e-16,168;CL:0002087,1.04e-15,115;CL:0000988,5.94e-15,177;CL:0002031,2.47e-13,120;CL:0002320,1.30e-11,361;CL:0000134,1.52e-11,354;CL:0000048,1.01e-08,427;CL:0000723,1.59e-08,433;CL:0000034,6.63e-08,441;CL:0000219,6.09e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;3.39e-17;42!CL:0000049;6.37e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.35e-18!102;UBERON:0003061!1.35e-18!102;UBERON:0002193!4.06e-18!112;UBERON:0002371!1.43e-15!80;UBERON:0004765!1.50e-14!101;UBERON:0001434!1.50e-14!101;UBERON:0001474!2.67e-14!86;UBERON:0002405!1.04e-13!115;UBERON:0002384!2.97e-10!375;UBERON:0003081!4.76e-09!216;UBERON:0002204!4.88e-09!167;UBERON:0000926!1.53e-08!448;UBERON:0004120!1.53e-08!448;UBERON:0006603!1.53e-08!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.22e-20,98;UBERON:0003061,3.22e-20,98;UBERON:0002193,1.32e-19,108;UBERON:0002371,2.83e-17,76;UBERON:0002405,1.29e-16,93;UBERON:0004765,1.59e-16,90;UBERON:0001434,1.95e-16,100;UBERON:0001474,8.18e-16,82;UBERON:0000926,1.24e-11,315;UBERON:0004120,1.24e-11,315;UBERON:0006603,1.24e-11,315;UBERON:0002384,9.59e-11,371;UBERON:0002204,1.80e-10,167;UBERON:0003081,2.58e-09,203 | |||
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| ||
|short_description=p1@CDV3 | |||
}} | }} |
Latest revision as of 21:10, 24 September 2015
Short description: | p1@CDV3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDV3_5end |
Coexpression cluster: | NA |
Association with transcript: | -31bp_to_ENST00000264993_5end |
EntrezGene: | CDV3 |
HGNC: | 26928 |
UniProt: | Q9UKY7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 8.97e-26 | 48 |
phagocyte | 8.97e-26 | 48 |
myeloid leukocyte | 9.81e-26 | 72 |
classical monocyte | 1.18e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.18e-23 | 42 |
monopoietic cell | 3.54e-22 | 59 |
monocyte | 3.54e-22 | 59 |
monoblast | 3.54e-22 | 59 |
promonocyte | 3.54e-22 | 59 |
macrophage dendritic cell progenitor | 1.25e-21 | 61 |
myeloid cell | 2.38e-20 | 108 |
common myeloid progenitor | 2.38e-20 | 108 |
myeloid lineage restricted progenitor cell | 3.70e-20 | 66 |
granulocyte monocyte progenitor cell | 4.39e-20 | 67 |
leukocyte | 1.51e-16 | 136 |
hematopoietic oligopotent progenitor cell | 2.63e-16 | 161 |
hematopoietic multipotent progenitor cell | 2.63e-16 | 161 |
hematopoietic stem cell | 7.60e-16 | 168 |
nongranular leukocyte | 1.04e-15 | 115 |
hematopoietic cell | 5.94e-15 | 177 |
hematopoietic lineage restricted progenitor cell | 2.47e-13 | 120 |
connective tissue cell | 1.30e-11 | 361 |
mesenchymal cell | 1.52e-11 | 354 |
multi fate stem cell | 1.01e-08 | 427 |
somatic stem cell | 1.59e-08 | 433 |
stem cell | 6.63e-08 | 441 |
motile cell | 6.09e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.22e-20 | 98 |
blood island | 3.22e-20 | 98 |
hemolymphoid system | 1.32e-19 | 108 |
bone marrow | 2.83e-17 | 76 |
immune system | 1.29e-16 | 93 |
skeletal element | 1.59e-16 | 90 |
skeletal system | 1.95e-16 | 100 |
bone element | 8.18e-16 | 82 |
mesoderm | 1.24e-11 | 315 |
mesoderm-derived structure | 1.24e-11 | 315 |
presumptive mesoderm | 1.24e-11 | 315 |
connective tissue | 9.59e-11 | 371 |
musculoskeletal system | 1.80e-10 | 167 |
lateral plate mesoderm | 2.58e-09 | 203 |