FF:11775-124A2: Difference between revisions

Latest revision as of 18:19, 4 June 2020

Name:	CD41+ megakaryocyte control, donor1
Species:	Mouse (Mus musculus)
Library ID:	CNhs13212
Sample type:	primary cells
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bone marrow
dev stage	NA
sex	NA
age	NA
cell type	megakaryocyte
cell line	NA
company	NA
collaboration	Hozumi Motohashi (Tohoku University Graduate School of Medicine)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	PBS-1
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004730

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13212		CAGE		DRX008800		DRR009672

Accession ID Mm9

Library id		BAM		CTSS
CNhs13212		DRZ001097		DRZ002482

Accession ID Mm10

Library id		BAM		CTSS
CNhs13212		DRZ012447		DRZ013832

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs13212

0	0
1	0
10	0
100	0
1000	-0.00367
1001	-0.00378
1002	-0.116
1003	-0.166
1004	0
1005	0.212
1006	-0.143
1007	-0.198
1008	0
1009	-0.19
101	0.158
1010	0
1011	0.105
1012	0
1013	-0.126
1014	-0.0874
1015	-0.0904
1016	-0.594
1017	0
1018	0
1019	0
102	0.212
1020	0.0953
1021	0.212
1022	-0.227
1023	0.0294
1024	-0.14
1025	-0.0611
1026	0
1027	-0.048
1028	0
1029	-0.119
103	-0.0887
1030	0.619
1031	-0.848
1032	-0.536
1033	0.0526
1034	0
1035	0
1036	0.22
1037	0
1038	-0.258
1039	-0.0403
104	0
1040	-0.172
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13212

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.70599e-6
MA0003.1	MA0003.1	0.451
MA0004.1	MA0004.1	0.112
MA0006.1	MA0006.1	0.804
MA0007.1	MA0007.1	0.776
MA0009.1	MA0009.1	0.704
MA0014.1	MA0014.1	0.747
MA0017.1	MA0017.1	0.341
MA0018.2	MA0018.2	0.738
MA0019.1	MA0019.1	0.417
MA0024.1	MA0024.1	0.979
MA0025.1	MA0025.1	0.294
MA0027.1	MA0027.1	0.838
MA0028.1	MA0028.1	1.87225e-5
MA0029.1	MA0029.1	0.214
MA0030.1	MA0030.1	0.191
MA0031.1	MA0031.1	0.76
MA0035.2	MA0035.2	0.7
MA0038.1	MA0038.1	0.437
MA0039.2	MA0039.2	0.787
MA0040.1	MA0040.1	0.694
MA0041.1	MA0041.1	0.123
MA0042.1	MA0042.1	0.717
MA0043.1	MA0043.1	0.487
MA0046.1	MA0046.1	6.81692e-10
MA0047.2	MA0047.2	0.9
MA0048.1	MA0048.1	0.421
MA0050.1	MA0050.1	4.13943e-13
MA0051.1	MA0051.1	2.93988e-8
MA0052.1	MA0052.1	0.0123
MA0055.1	MA0055.1	0.53
MA0057.1	MA0057.1	0.986
MA0058.1	MA0058.1	0.129
MA0059.1	MA0059.1	0.0381
MA0060.1	MA0060.1	0.0125
MA0061.1	MA0061.1	1.21889e-6
MA0062.2	MA0062.2	1.22846e-16
MA0065.2	MA0065.2	0.26
MA0066.1	MA0066.1	0.0418
MA0067.1	MA0067.1	0.277
MA0068.1	MA0068.1	0.0399
MA0069.1	MA0069.1	0.499
MA0070.1	MA0070.1	0.591
MA0071.1	MA0071.1	0.495
MA0072.1	MA0072.1	0.537
MA0073.1	MA0073.1	0.705
MA0074.1	MA0074.1	0.561
MA0076.1	MA0076.1	2.53513e-6
MA0077.1	MA0077.1	0.16
MA0078.1	MA0078.1	0.756
MA0079.2	MA0079.2	0.0694
MA0080.2	MA0080.2	2.63883e-14
MA0081.1	MA0081.1	0.001
MA0083.1	MA0083.1	0.0432
MA0084.1	MA0084.1	0.693
MA0087.1	MA0087.1	0.825
MA0088.1	MA0088.1	0.649
MA0090.1	MA0090.1	0.00826
MA0091.1	MA0091.1	0.304
MA0092.1	MA0092.1	0.804
MA0093.1	MA0093.1	0.128
MA0099.2	MA0099.2	0.309
MA0100.1	MA0100.1	0.358
MA0101.1	MA0101.1	2.13392e-6
MA0102.2	MA0102.2	0.805
MA0103.1	MA0103.1	0.127
MA0104.2	MA0104.2	0.14
MA0105.1	MA0105.1	1.01321e-8
MA0106.1	MA0106.1	0.836
MA0107.1	MA0107.1	9.22729e-7
MA0108.2	MA0108.2	5.49013e-5
MA0111.1	MA0111.1	0.436
MA0112.2	MA0112.2	0.00486
MA0113.1	MA0113.1	0.238
MA0114.1	MA0114.1	0.71
MA0115.1	MA0115.1	0.785
MA0116.1	MA0116.1	6.71082e-4
MA0117.1	MA0117.1	0.769
MA0119.1	MA0119.1	0.684
MA0122.1	MA0122.1	0.979
MA0124.1	MA0124.1	0.618
MA0125.1	MA0125.1	0.0315
MA0131.1	MA0131.1	0.457
MA0135.1	MA0135.1	0.9
MA0136.1	MA0136.1	1.60766e-19
MA0137.2	MA0137.2	0.245
MA0138.2	MA0138.2	0.0701
MA0139.1	MA0139.1	0.12
MA0140.1	MA0140.1	0.542
MA0141.1	MA0141.1	0.685
MA0142.1	MA0142.1	1.87284e-4
MA0143.1	MA0143.1	0.217
MA0144.1	MA0144.1	0.423
MA0145.1	MA0145.1	0.647
MA0146.1	MA0146.1	0.351
MA0147.1	MA0147.1	0.0986
MA0148.1	MA0148.1	0.885
MA0149.1	MA0149.1	0.177
MA0150.1	MA0150.1	0.638
MA0152.1	MA0152.1	0.327
MA0153.1	MA0153.1	4.76015e-7
MA0154.1	MA0154.1	0.00128
MA0155.1	MA0155.1	0.774
MA0156.1	MA0156.1	4.03382e-23
MA0157.1	MA0157.1	0.383
MA0159.1	MA0159.1	0.0201
MA0160.1	MA0160.1	0.736
MA0162.1	MA0162.1	0.434
MA0163.1	MA0163.1	1.47283e-4
MA0164.1	MA0164.1	0.5
MA0258.1	MA0258.1	0.0136
MA0259.1	MA0259.1	0.458

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13212

Novel motif	Logo	P-value
1	1	0.13
10	10	0.0316
100	100	0.829
101	101	0.989
102	102	0.59
103	103	0.0689
104	104	0.714
105	105	0.749
106	106	0.297
107	107	0.852
108	108	0.558
109	109	0.124
11	11	0.167
110	110	0.0575
111	111	0.0665
112	112	0.0435
113	113	0.291
114	114	0.154
115	115	0.652
116	116	0.922
117	117	6.26559e-4
118	118	0.113
119	119	0.639
12	12	0.467
120	120	0.432
121	121	0.415
122	122	0.847
123	123	0.8
124	124	0.878
125	125	0.161
126	126	0.239
127	127	0.453
128	128	0.145
129	129	0.128
13	13	0.079
130	130	0.904
131	131	0.841
132	132	0.696
133	133	0.989
134	134	0.949
135	135	0.974
136	136	0.888
137	137	0.132
138	138	0.789
139	139	0.274
14	14	0.968
140	140	0.843
141	141	0.159
142	142	0.661
143	143	0.0123
144	144	0.535
145	145	0.119
146	146	0.845
147	147	0.805
148	148	0.0892
149	149	0.579
15	15	0.0869
150	150	0.328
151	151	0.16
152	152	0.696
153	153	0.188
154	154	0.422
155	155	0.249
156	156	1.17834e-25
157	157	0.839
158	158	0.128
159	159	0.745
160	160	0.996
161	161	0.0521
162	162	0.322
163	163	0.269
164	164	0.0905
165	165	0.316
166	166	0.506
167	167	0.136
168	168	0.92
169	169	0.0635
17	17	0.425
18	18	0.273
19	19	0.892
2	2	0.161
20	20	0.0328
21	21	0.329
22	22	0.826
23	23	0.348
24	24	0.464
25	25	0.189
26	26	0.0281
27	27	0.708
28	28	0.221
29	29	0.0192
3	3	0.051
30	30	0.233
31	31	0.931
32	32	0.802
33	33	0.217
34	34	0.717
35	35	0.0888
36	36	0.045
37	37	0.0684
38	38	0.716
39	39	0.533
4	4	0.768
40	40	0.204
41	41	0.361
42	42	0.121
43	43	0.139
44	44	0.276
45	45	0.753
46	46	0.165
47	47	0.215
48	48	0.163
49	49	0.108
5	5	0.0424
50	50	0.642
51	51	0.884
52	52	0.334
53	53	0.447
54	54	0.829
55	55	0.482
56	56	0.702
57	57	0.7
58	58	0.128
59	59	0.287
6	6	0.613
60	60	0.662
61	61	0.106
62	62	0.0526
63	63	0.715
64	64	0.614
65	65	0.711
66	66	0.981
67	67	0.711
68	68	0.0743
69	69	0.785
7	7	0.186
70	70	0.0121
71	71	0.0429
72	72	0.227
73	73	0.107
74	74	0.869
75	75	0.0033
76	76	0.0168
77	77	0.432
78	78	0.0933
79	79	0.723
8	8	0.0566
80	80	0.0148
81	81	0.531
82	82	0.202
83	83	0.148
84	84	0.513
85	85	0.509
86	86	0.157
87	87	0.515
88	88	0.518
89	89	0.561
9	9	0.873
90	90	0.0211
91	91	0.659
92	92	0.207
93	93	0.306
94	94	0.174
95	95	0.16
96	96	0.313
97	97	0.804
98	98	0.137
99	99	0.342

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13212

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011468 mouse CD41-positive megakaryocyte control sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000556 (megakaryocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000343 (control treatment sample)
0011468 (mouse CD41-positive megakaryocyte control sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004730
+|accession_numbers=CAGE;DRX008800;DRR009672;DRZ001097;DRZ002482;DRZ012447;DRZ013832
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255,CL:0000556
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
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fp759!0.40!4.89!Zfp759;;chr13:5860872..5860883,+!p3@Klf6!0.40!3.79!Klf6;;chr18:80904923..80904933,-!p3@Nfatc1!0.40!2.37!Nfatc1;;chr8:23970000..23970026,+!p1@Myst3!0.39!116.25!Myst3;;chr1:173341436..173341468,+!p1@Usf1!0.39!53.79!Usf1;;chr12:72116953..72117050,+!p1@Arid4a!0.39!26.18!Arid4a;;chr13:67162067..67162114,-!p1@Zfp712!0.39!14.35!Zfp712;;chr6:115803364..115803407,-!p1@Mbd4!0.39!9.15!Mbd4;;chr10:80600725..80600737,+!p9@Zbtb7a!0.39!2.68!Zbtb7a;;chr12:85534937..85534948,-!p10@C130039O16Rik!0.39!2.21!C130039O16Rik;;chr17:71202982..71202985,-!p7@Tgif1!0.39!2.05!Tgif1;;chr15:76181733..76181767,+!p1@Maf1!0.38!62.15!Maf1;;chr13:67627072..67627115,-!p1@Zfp58!0.38!40.85!Zfp87;;chr12:77471524..77471607,+!p1@Zbtb1!0.38!27.60!Zbtb1;;chr12:77470507..77470572,-!p2@Zbtb25!0.38!7.73!Zbtb25;;chr6:47785748..47785776,+!p3@Zfp398!0.38!7.57!Zfp398;;chr10:5734525..5734569,-!p3@Esr1!0.38!2.84!Esr1;;chr10:20881176..20881191,-!p6@Myb!0.38!1.42!Myb;;chr11:23670933..23670942,-!p4@Rel!0.38!1.42!Rel;;chr3:130815472..130815497,+!p6@Lef1!0.38!1.42!Lef1;;chr5:77524043..77524064,-!p9@Hopx!0.38!1.42!Hopx;;chr19:37511111..37511115,+!p2@Hhex!0.38!1.42!Hhex;;chr16:92826232..92826245,-!p4@Runx1!0.38!1.42!Runx1;;chr3:51081233..51081365,-!p1@Elf2!0.37!44.48!Elf2;;chr7:13420322..13420401,+!p1@Zfp110!0.37!41.96!Zfp110;;chr4:149943647..149943707,+!p2@Rere!0.37!37.86!Rere;;chr4:102791976..102792008,+!p2@Mier1!0.37!22.71!Mier1;;chr13:67585161..67585205,-!p1@Zfp874b!0.37!10.57!Zfp874b;;chr10:80600749..80600766,+!p2@Zbtb7a!0.37!10.41!Zbtb7a;;chr10:82226833..82226864,-!p3@Nfyb!0.37!10.41!Nfyb;;chr2:72818978..72818997,-!p4@Sp3!0.37!8.52!Sp3;;chr10:127984472..127984504,-!p2@Zc3h10!0.37!6.15!Zc3h10;;chr13:67295432..67295453,+!p1@Zfp455!0.37!3.00!Zfp455;;chr14:56223387..56223401,+!p3@Irf9!0.37!1.74!Irf9;;chr5:22940253..22940289,+!p1@Mll5!0.36!103.79!Mll5;;chr7:133839456..133839523,+!p1@Bola2!0.36!102.84!Bola2;;chr5:138187195..138187255,+!p1@Tsc22d4!0.36!89.28!Tsc22d4;;chr7:117205217..117205246,+!p1@Zfp143!0.36!40.22!Zfp143;;chr11:97524509..97524595,+!p1@Mllt6!0.36!24.45!Mllt6;;chr5:65194720..65194738,+!p2@Klf3!0.36!10.57!Klf3;;chr16:44173352..44173383,+!p1@Gm608!0.36!9.62!Gm608;;chr4:149862477..149862553,+!p3@Rere!0.36!6.62!Rere;;chr2:83499707..83499708,+!p6@Zc3h15!0.36!6.62!Zc3h15;;chrX:45807489..45807502,-!p2@Elf4!0.36!5.84!Elf4;;chr17:31701800..31701818,+!p2@Pknox1!0.36!4.57!Pknox1;;chr9:72122680..72122693,+!p2@Zfp280d!0.36!3.94!Zfp280d;;chr5:104182963..104182982,+!p5@Aff1!0.36!3.63!Aff1;;chr11:44430989..44431015,+!p4@Ebf1!0.36!3.00!Ebf1;;chr2:25562241..25562250,+!p4@Bmyc!0.36!1.58!Bmyc;;chr16:11176363..11176458,-!p1@Zc3h7a!0.35!98.58!Zc3h7a;;chr7:29551488..29551529,-!p1@Nfkbib!0.35!64.35!Nfkbib;;chr19:41557122..41557178,+!p1@Lcor!0.35!41.48!Lcor;;chr11:49016967..49017026,+!p1@Zfp62!0.35!35.02!Zfp62;;chrX:35542957..35543003,+!p1@Zbtb33!0.35!20.19!Zbtb33;;chr17:45570455..45570479,-!p2@Cdc5l!0.35!6.78!Cdc5l;;chr10:114821532..114821565,-!p4@Thap2!0.35!6.62!Thap2;;chr9:72379991..72380014,+!p2@Rfx7!0.35!5.99!Rfx7;;chr10:20880629..20880683,-!p1@Myb!0.35!5.21!Myb;;chr4:149943326..149943351,+!p4@Rere!0.35!3.15!Rere;;chr11:102178005..102178022,-!p8@Ubtf!0.35!2.52!Ubtf;;chr2:17985518..17985540,+!p6@Mllt10!0.35!2.05!Mllt10;;chr17:84587077..84587097,-!p4@Zfp36l2!0.35!1.89!Zfp36l2;;chr16:55973994..55974005,+!p8@Rpl24,p8@Zbtb11!0.35!1.74!Zbtb11;;chr1:133903955..133903969,+!p10@Elk4!0.35!1.74!Elk4;;chr16:43508231..43508271,+!p21@Zbtb20!0.35!1.26!Zbtb20;;chr15:79178559..79178584,+!p8@Maff!0.35!1.26!Maff;;chr19:46380346..46380360,+!p6@Nfkb2!0.35!1.26!Nfkb2;;chr2:91076997..91077012,-!p4@Ddb2!0.35!1.26!Ddb2;;chr4:32325910..32325921,+!p8@Bach2!0.35!1.26!Bach2;;chr2:90936867..90936874,+!p7@Sfpi1!0.35!1.26!Sfpi1;;chr7:52963182..52963199,+!p9@Dbp!0.35!1.26!Dbp;;chrX:7544943..7545001,-!p1@Gata1!0.35!1.26!Gata1;;chr6:99385340..99385362,-!p11@Foxp1!0.35!1.26!Foxp1;;chr5:108155037..108155060,-!p2@Gfi1!0.35!1.26!Gfi1;;chr2:119722948..119723028,+!p1@Mga!0.34!56.78!Mga;;chr7:52253030..52253070,+!p1@Irf3!0.34!43.53!Irf3;;chr15:102236700..102236764,+!p1@Sp1!0.34!29.50!Sp1;;chr5:22940320..22940331,+!p2@Mll5!0.34!5.36!Mll5;;chr17:22362583..22362606,-!p1@Gm4944!0.34!5.21!Gm4944;;chr7:148514080..148514108,-!p4@Deaf1!0.34!3.47!Deaf1;;chr16:23988686..23988693,-!p2@Bcl6!0.34!3.31!Bcl6;;chr13:55206625..55206636,+!p2@Zfp346!0.34!3.15!Zfp346;;chr7:135020469..135020485,+!p4@Zfp646!0.34!2.84!Zfp646;;chr15:88582079..88582091,+!p1@Gm15583,p1@Zbed4!0.34!2.52!Zbed4;;chr16:11176344..11176353,-!p2@Zc3h7a!0.34!1.89!Zc3h7a;;chr11:23978353..23978379,+!p10@Bcl11a!0.34!1.58!Bcl11a;;chr13:59923965..59924003,-!p2@Zcchc6!0.34!1.58!Zcchc6;;chr8:73222830..73222844,+!p1@Jund!0.33!494.96!Jund;;chr10:79896360..79896400,-!p1@Tcf3!0.33!78.39!Tcf3;;chr16:91044718..91044765,-!p2@Gcfc1!0.33!33.75!Gcfc1;;chr17:27110106..27110164,+!p1@Ggnbp1,p1@Zbtb9!0.33!31.55!Zbtb9;;chr19:40969182..40969226,+!p1@Zfp518a!0.33!15.77!Zfp518a;;chr4:128483347..128483411,-!p2@Zfp362!0.33!13.88!Zfp362;;chr1:162964925..162964963,-!p1@Zbtb37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@@ Line 41: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011468
 |is_obsolete=
+|library_id=CNhs13212
+|library_id_phase_based=2:CNhs13212
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;11775
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;11775
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/CD41%252b%2520megakaryocyte%2520control%252c%2520donor1.CNhs13212.11775-124A2.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/CD41%252b%2520megakaryocyte%2520control%252c%2520donor1.CNhs13212.11775-124A2.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/CD41%252b%2520megakaryocyte%2520control%252c%2520donor1.CNhs13212.11775-124A2.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/CD41%252b%2520megakaryocyte%2520control%252c%2520donor1.CNhs13212.11775-124A2.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/CD41%252b%2520megakaryocyte%2520control%252c%2520donor1.CNhs13212.11775-124A2.mm9.nobarcode.rdna.fa.gz
 |name=CD41+ megakaryocyte control, donor1
 |namespace=
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13212,LSID1005,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=-0.11779559634038,0,0,0.168259719722084,0.168259719722084,0,-0.08294348874013,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,0.0973357319387794,0,0.0595391808241505,0,0,0,0,0,0,0,0,0,0,0.103034617920411,0.286289245372825,0,0,0,0,0,-0.0189759597665872,-0.091558018055706,0.0214670340411942,-0.920603673123874,-0.269868638010351,0.252526681274343,0,0,0,0,0,0,0,0,0,0,0,-0.00239785420948765,0,0,0,0.0636076933539527,0.0265550191268687,0,0,0.397453369117035,0.411166798147301,0,-0.117389802908326,0.0730892827473831,-0.0944833494171298,-0.00478886231987713,0,-0.0780086007519514,-0.124186127393379,-0.167854542036812,0,0,-0.047641328176976,-0.141556096101683,0.0544007859623051,0.133602216896486,0,0,0,0,0,0,0.0339058309654363,-0.104493612570352,0.453707194730263,0,0,0,0.168259719722084,0
@@ Line 83: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:11775-124A2;search_select_hide=table117:11775-124A2
 }}

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FF:11775-124A2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:19, 4 June 2020

CNhs13212

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0