FFCP PHASE1:Hg19::chr11:111411394..111411505,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=143903 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29471 | |||
|TSSclassifier=strong | |||
|UniProt=B4DJU0,E9PQU7,E9PR90,E9PMI0,B4DP26 | |||
|association_with_transcript=0bp_to_ENST00000436913,ENST00000525126,ENST00000525866,ENST00000533265,ENST00000541011_5end | |||
|cluster_id=chr11:111411394..111411505,+ | |||
|description=CAGE_peak_1_at_LAYN_5end | |||
|id=chr11:111411394..111411505,+ | |||
|ontology_enrichment_celltype=CL:0000055!6.63e-33!180;CL:0000057!1.18e-19!75;CL:0000680!3.20e-13!57;CL:0000056!3.20e-13!57;CL:0000355!3.20e-13!57;CL:0000192!8.97e-13!42;CL:0000514!8.97e-13!42;CL:0000187!1.28e-12!54;CL:0000183!1.77e-12!59;CL:0000222!9.59e-12!119;CL:0000393!3.24e-11!60;CL:0000211!3.24e-11!60;CL:0002620!2.23e-10!23;CL:0000359!2.01e-09!32 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.18e-10;23!CL:0000192;1.70e-09;43!CL:0000359;5.13e-09;32!CL:0000057;6.86e-09;73!CL:0000134;5.36e-08;55!CL:0000187;1.90e-07;55!CL:0000349;4.60e-07;19!CL:0000723;5.00e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.02e-20,76;CL:0000680,1.93e-13,58;CL:0000056,1.93e-13,58;CL:0000355,1.93e-13,58;CL:0000192,6.02e-13,43;CL:0000514,6.02e-13,43;CL:0000187,7.96e-13,55;CL:0000222,1.20e-11,121;CL:0000393,2.04e-11,61;CL:0000211,2.04e-11,61;CL:0002620,2.19e-10,23;CL:0000359,1.41e-09,32;CL:0000349,4.19e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000514;1.70e-09;43!CL:0000355;1.71e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.75e-20!365;UBERON:0000914!8.76e-20!83;UBERON:0002329!8.76e-20!83;UBERON:0003077!8.76e-20!83;UBERON:0003059!8.76e-20!83;UBERON:0007282!8.76e-20!83;UBERON:0009618!8.76e-20!83;UBERON:0007285!8.76e-20!83;UBERON:0000486!1.07e-15!82;UBERON:0004290!1.98e-15!70;UBERON:0001134!1.16e-12!61;UBERON:0002036!1.16e-12!61;UBERON:0003082!1.16e-12!61;UBERON:0002385!1.61e-12!63;UBERON:0001015!1.61e-12!63;UBERON:0000383!1.61e-12!63;UBERON:0005256!1.83e-12!143;UBERON:0000468!8.40e-12!659;UBERON:0000483!1.69e-11!309;UBERON:0000119!2.39e-11!312;UBERON:0000481!3.21e-10!347;UBERON:0000467!2.50e-09!625;UBERON:0000480!3.02e-09!626;UBERON:0003102!4.00e-09!95;UBERON:0002199!9.96e-09!45;UBERON:0002416!9.96e-09!45;UBERON:0002049!1.03e-08!79;UBERON:0007798!1.03e-08!79;UBERON:0002100!1.19e-08!216;UBERON:0004121!1.54e-08!169;UBERON:0000924!2.64e-08!173;UBERON:0006601!2.64e-08!173;UBERON:0000033!4.02e-08!123;UBERON:0002097!6.10e-08!40;UBERON:0000153!1.67e-07!129;UBERON:0007811!1.67e-07!129;UBERON:0000477!8.14e-07!286;UBERON:0000055!9.28e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,3.55e-16,73;UBERON:0000486,5.48e-16,83;UBERON:0002329,1.06e-15,71;UBERON:0003059,1.06e-15,71;UBERON:0007282,1.06e-15,71;UBERON:0004290,1.06e-15,71;UBERON:0009618,1.06e-15,71;UBERON:0007503,1.15e-15,78;UBERON:0003077,1.32e-15,72;UBERON:0007285,1.32e-15,72;UBERON:0001134,6.97e-13,62;UBERON:0002036,6.97e-13,62;UBERON:0003082,6.97e-13,62;UBERON:0002385,9.64e-13,64;UBERON:0001015,9.64e-13,64;UBERON:0000383,9.64e-13,64;UBERON:0000483,1.59e-12,306;UBERON:0000119,2.32e-12,309;UBERON:0010314,7.67e-12,132;UBERON:0003102,2.61e-10,99;UBERON:0004121,1.53e-09,171;UBERON:0000924,1.53e-09,171;UBERON:0006601,1.53e-09,171;UBERON:0003104,2.77e-09,160;UBERON:0009142,2.77e-09,160;UBERON:0005256,3.24e-09,122;UBERON:0002199,4.13e-09,46;UBERON:0002416,4.13e-09,46;UBERON:0002097,2.63e-08,41;UBERON:0002049,4.69e-08,78;UBERON:0007798,4.69e-08,78;UBERON:0004923,8.46e-08,66;UBERON:0000490,3.78e-07,148 | |||
|phase1_expression=44.3295245420158,74.7210828379531,58.2141688916361,73.0535077977852,30.3933544210556,73.276436024431,45.5939780702959,29.0591141776342,3.65659879479774,29.4880723801811,13.9560233594486,27.7420542605319,46.9505221246647,23.763139768329,26.5117900582333,24.2037052722639,36.1616716814386,40.8973650616929,29.7639007262209,45.9241546626419,58.3441976958564,47.3316629431913,19.1778111377808,32.9867364425651,39.7970167515525,0.152826811495903,0,0,1.18009283054671,0,4.02521920621798,3.67768489791571,8.433765725791,1.47901604066715,0,0,0.880801318004542,0.553995408531877,0.601633342410425,0.217010870715852,0,0,0,0.726991193897824,0.377875943688809,0,0.697287110717054,0.822335776043652,0,0,0,0,1.37898272294647,1.29096936716765,1.35426486594342,0.188242339542605,0.545812300115692,0.674170453335254,0.612167784741805,2.56743221660875,0.639337125799041,0,0.797854630486527,0.852449501065388,0.290209238628584,1.13477044938228,0,0,0.521482918420201,0,2.42159801053347,0.736555271975129,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,3.16060901730092,1.57367816091066,2.35806457649499,2.87842098599313,13.3749196312542,8.14805666583976,3.78758244587787,1.94826728407911,4.34500781852177,21.800837153138,12.84896588585,12.9985854607207,1.40900451698243,4.1618991219161,10.0307121808242,6.90875044464621,9.56350182925673,2.52087157375503,0.535081656179426,0,0,0,0.34362744548263,0.253019692019503,0,0,0,0.602300476311091,0.255973222308837,0,0.236777252044017,0,0.80642697289893,0.267440195783507,3.91025890483557,2.43806866313962,12.7433163343691,8.438929081673,32.529523714611,81.71807943365,68.222710430548,5.5670016293577,20.4386645527107,55.681007309636,46.3414440696759,37.0662795624992,11.0677318795567,17.486173838042,8.52804218404188,0.649094787309367,0.348259474598534,4.25465473660369,0.476981248610684,0,0.371457501329565,0.993812036833525,6.881876760849,1.04142150482278,1.13061588384802,1.25849830862972,2.75118041940067,3.13492449805216,11.1119206442811,16.3652480835887,16.4013100254688,31.4206867345135,110.239455329184,36.1211845171291,7.35326160691737,2.43042584364528,1.87529429396568,2.02076435363553,2.13961812918312,3.06633274931766,0.949265659568129,0.916008719652036,1.31780417436063,0,4.79703457356788,16.4000744059455,12.4097901431288,19.7289679411696,19.7917268316681,14.5414036701326,15.6989728039846,6.4049397437823,19.98007142179,12.7596524513904,5.25371621071783,3.59616186849609,10.4436625075003,4.03323147135999,25.30671463805,16.544484072007,33.6578374711225,27.9469032631868,35.2303495931295,28.0040193756868,27.9497105337474,35.3186716270965,22.4786800680535,34.820788256233,90.2882171534361,111.764652033908,61.8909726117858,47.4287973598717,32.6572061070888,35.7838966833817,49.8715407871529,157.592965896221,120.143215953216,123.495684421223,4.99101605904093,112.477301576916,244.950324974897,120.589251759791,140.142541871416,134.998813302355,52.816310709354,104.597673258353,188.860715777977,142.550338550834,68.6619865943991,198.55163137144,53.3431987502079,168.274546852875,133.093521758713,180.412470218359,11.9821728961244,26.456373697311,8.03052867089211,1.70763188581434,4.77107165957347,1.85910308591229,2.90250954043037,1.26160425437814,4.01475094983413,137.675588450238,94.5564179143541,109.12658786846,108.197727231451,98.1756095070636,0,0,0,0,0,0,0,0,0,5.16708818237254,11.2193419042757,52.2698994390878,44.1026134156626,0,0,1.18157981336281,0,0,45.6370375394078,27.9863227791995,2.24803506515239,0.904760751704678,15.1845050059989,13.032332212413,11.4392826380754,40.4127757670765,19.4763080358129,52.9513211003556,31.0387862686309,25.9271887042902,23.7817690293248,0,0,0,2.34004265139238,4.60756603095058,39.3682102744463,35.1082647935616,33.742473143688,1.52249488594842,1.16253575405585,9.58456697913028,0,0,0.207328115540772,0.288239906833923,0.50496973370552,0.571481048629521,0,0,3.4214489204541,7.50640696734262,0.300343057843917,0.285826432630578,4.93376771119587,8.7192013766656,2.42016343209135,26.8885168776178,21.4593867511129,16.90605505112,24.732244842393,34.3224541807508,38.066691390797,41.1362482867507,35.9669941671734,44.0372220467094,45.0375932474898,69.9754286263653,12.3779750031619,44.7793855415608,26.1344118068032,52.7518909854276,30.5036710510103,31.491492222348,1.2162378064119,0,0,33.7871046243132,27.5668646001873,27.1010119577365,26.3501978134994,18.2873927069841,46.7349114056127,0,0.197030760201927,0.431255149719035,1.02674429023799,1.77866236955724,2.60279707715243,10.05275456611,2.17771144934653,10.8449587781038,0,0,0,29.814032487751,27.0092081372226,20.3448767774802,82.3564611661996,65.4834388885584,69.2313601998973,47.793697317027,84.2649079237613,90.9630016223939,28.9724599619014,55.1307246784412,63.7917323154293,98.1784843489336,8.81105208582333,6.51972505240626,1.86091223510599,1.50999940573032,0.533637789017222,8.79069957194152,36.6157966923094,40.5202993061772,62.275059762513,100.210668557105,123.209781456119,76.1146546578864,105.411693307741,57.2639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| |||
|short_description=p1@LAYN | |||
}} |
Latest revision as of 02:49, 25 September 2015
Short description: | p1@LAYN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LAYN_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000436913, ENST00000525126, ENST00000525866, ENST00000533265, ENST00000541011_5end |
EntrezGene: | LAYN |
HGNC: | 29471 |
UniProt: | B4DJU0E9PQU7E9PR90E9PMI0B4DP26 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.02e-20 | 76 |
muscle precursor cell | 1.93e-13 | 58 |
myoblast | 1.93e-13 | 58 |
multi-potent skeletal muscle stem cell | 1.93e-13 | 58 |
smooth muscle cell | 6.02e-13 | 43 |
smooth muscle myoblast | 6.02e-13 | 43 |
muscle cell | 7.96e-13 | 55 |
mesodermal cell | 1.20e-11 | 121 |
electrically responsive cell | 2.04e-11 | 61 |
electrically active cell | 2.04e-11 | 61 |
skin fibroblast | 2.19e-10 | 23 |
vascular associated smooth muscle cell | 1.41e-09 | 32 |
extraembryonic cell | 4.19e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 3.55e-16 | 73 |
multilaminar epithelium | 5.48e-16 | 83 |
somite | 1.06e-15 | 71 |
presomitic mesoderm | 1.06e-15 | 71 |
presumptive segmental plate | 1.06e-15 | 71 |
dermomyotome | 1.06e-15 | 71 |
trunk paraxial mesoderm | 1.06e-15 | 71 |
epithelial vesicle | 1.15e-15 | 78 |
paraxial mesoderm | 1.32e-15 | 72 |
presumptive paraxial mesoderm | 1.32e-15 | 72 |
skeletal muscle tissue | 6.97e-13 | 62 |
striated muscle tissue | 6.97e-13 | 62 |
myotome | 6.97e-13 | 62 |
muscle tissue | 9.64e-13 | 64 |
musculature | 9.64e-13 | 64 |
musculature of body | 9.64e-13 | 64 |
epithelium | 1.59e-12 | 306 |
cell layer | 2.32e-12 | 309 |
structure with developmental contribution from neural crest | 7.67e-12 | 132 |
surface structure | 2.61e-10 | 99 |
ectoderm-derived structure | 1.53e-09 | 171 |
ectoderm | 1.53e-09 | 171 |
presumptive ectoderm | 1.53e-09 | 171 |
mesenchyme | 2.77e-09 | 160 |
entire embryonic mesenchyme | 2.77e-09 | 160 |
trunk mesenchyme | 3.24e-09 | 122 |
integument | 4.13e-09 | 46 |
integumental system | 4.13e-09 | 46 |
skin of body | 2.63e-08 | 41 |
vasculature | 4.69e-08 | 78 |
vascular system | 4.69e-08 | 78 |
organ component layer | 8.46e-08 | 66 |
unilaminar epithelium | 3.78e-07 | 148 |