FFCP PHASE1:Hg19::chr11:65430371..65430399,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5970 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9955 | |||
|TSSclassifier=strong | |||
|UniProt=Q96CP1,E9PSE4,E9PN69,E9PNK5,E9PMD5,E9PKH5,E9PM47,B4E082 | |||
|association_with_transcript=0bp_to_ENST00000426617,ENST00000525301,ENST00000525658,ENST00000527074,ENST00000527909,ENST00000531238,ENST00000531484,ENST00000532879,ENST00000532999,ENST00000533546,ENST00000545816_5end | |||
|cluster_id=chr11:65430371..65430399,- | |||
|description=CAGE_peak_1_at_RELA_5end | |||
|id=chr11:65430371..65430399,- | |||
|ontology_enrichment_celltype=CL:0002057!8.09e-11!42;CL:0000860!4.49e-10!45;CL:0000115!5.32e-10!35;CL:0002078!1.52e-09!44;CL:0002139!8.58e-09!24;CL:0000766!3.01e-08!76;CL:0000071!7.48e-08!18;CL:0002546!7.48e-08!18;CL:0000076!8.32e-08!62;CL:0000213!1.40e-07!57;CL:0000215!1.40e-07!57;CL:0000222!6.42e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.62e-15;33!CL:0002057;4.62e-15;33!CL:0000473;8.17e-10;39!CL:0000234;8.17e-10;39!CL:0002139;8.18e-09;24!CL:0000115;1.22e-08;36!CL:0000071;6.88e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.09e-11,42;CL:0002057,8.09e-11,42;CL:0000115,2.54e-10,36;CL:0002078,7.47e-10,45;CL:0002139,8.58e-09,24;CL:0000473,1.20e-08,48;CL:0000234,1.20e-08,48;CL:0000766,1.91e-08,72;CL:0000213,7.44e-08,58;CL:0000215,7.44e-08,58;CL:0000071,7.48e-08,18;CL:0002546,7.48e-08,18;CL:0000076,1.51e-07,63;CL:0000222,5.41e-07,121 | |||
|ontology_enrichment_development_v019=CL:0002057;1.33e-08;42!CL:0002546;6.88e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.73e-14!216;UBERON:0000055!9.92e-13!69;UBERON:0001981!5.95e-11!60;UBERON:0007500!5.95e-11!60;UBERON:0004537!5.95e-11!60;UBERON:0006965!5.95e-11!60;UBERON:0002049!4.51e-10!79;UBERON:0007798!4.51e-10!79;UBERON:0003914!7.67e-10!118;UBERON:0004872!7.80e-09!84;UBERON:0001009!4.62e-08!113;UBERON:0001637!5.42e-08!42;UBERON:0003509!5.42e-08!42;UBERON:0004572!5.42e-08!42;UBERON:0001986!7.48e-08!18;UBERON:0004638!7.48e-08!18;UBERON:0004852!7.48e-08!18;UBERON:0004535!8.26e-08!110;UBERON:0000487!2.05e-07!22;UBERON:0002193!7.49e-07!112;UBERON:0006914!9.24e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;6.88e-08;18!UBERON:0001986;6.88e-08;18!UBERON:0004852;6.88e-08;18!UBERON:0000487;1.94e-07;22!UBERON:0003914;6.37e-07;74!UBERON:0006914;8.80e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,2.51e-13,203;UBERON:0000055,1.50e-12,68;UBERON:0007500,8.89e-11,59;UBERON:0001981,8.89e-11,59;UBERON:0004537,8.89e-11,59;UBERON:0006965,8.89e-11,59;UBERON:0003914,4.99e-10,117;UBERON:0002049,6.68e-10,78;UBERON:0007798,6.68e-10,78;UBERON:0004872,1.14e-08,83;UBERON:0001637,5.42e-08,42;UBERON:0003509,5.42e-08,42;UBERON:0004572,5.42e-08,42;UBERON:0001009,6.55e-08,112;UBERON:0004638,7.48e-08,18;UBERON:0001986,7.48e-08,18;UBERON:0004852,7.48e-08,18;UBERON:0004535,1.17e-07,109;UBERON:0000487,2.05e-07,22;UBERON:0002405,6.09e-07,93;UBERON:0002193,6.40e-07,108;UBERON:0006914,9.24e-07,25 | |||
|phase1_expression=51.7783380921086,49.8854220665991,57.7913056793482,54.0395811106904,38.885615215174,45.3616032532192,63.3249695420776,72.6477854440856,57.7220238321643,102.471051521129,237.950198278598,58.9791704751465,69.1069482958548,50.496672007699,59.9829250067528,73.9557661096953,63.8856199705416,78.8734897618363,74.6537182149476,83.2298352599086,88.9443013824943,99.6786014300319,30.341014635892,50.3697884268214,45.0698076145342,76.2605789364554,67.7329862962052,65.0151053650991,105.421626195506,55.6552627240958,97.5341576891279,108.491704488513,148.193312038899,113.144727111037,42.2970915168447,37.8170158416541,48.7376729295846,74.2353847432716,127.54626859101,76.6048373626957,38.513461569267,49.2318372348849,47.1363288770561,105.268324876405,142.459230770681,127.599216184791,156.657170874431,152.543286456097,119.54665916551,257.484691128325,261.540081366212,174.050921197999,127.900647553285,110.377880892834,98.8613352138695,136.475696168388,120.078706025452,79.55211349356,149.981107261742,153.404074942373,149.604887436976,207.476467817444,208.240058556984,207.145228758889,231.006553948353,293.90554639001,262.208166827137,237.932485998136,222.151723247006,173.533886919388,219.15461995328,208.813419604949,168.357990118551,42.8848231213242,47.6233631921698,34.8033351543904,63.1286907043302,52.5619124945272,92.4172123508211,27.9312488866424,42.1703355662071,32.8795476776341,47.5189860045571,48.6063364023297,39.1384071699964,28.1641946893895,50.8502903535736,48.2792049561766,34.3743333848128,32.4378276542024,74.5668989533377,115.685726306075,104.360591278187,71.372517432674,86.8788272621381,24.2313357993071,84.7819109190621,134.016670097465,100.950336008759,63.363681753067,68.443675993054,46.3978849620039,66.2410876586898,65.2865277347117,58.6265755874926,54.0542702784036,74.2002586716143,70.0659518899443,65.6799705177385,64.1307827954337,48.9139531480952,64.0464819474466,79.0367381653782,69.025533647146,68.9934457112847,63.4532319106371,61.3152789763074,61.5093127413908,64.2670017729537,56.067512921041,47.5290921315186,46.5721501779703,56.0139442969315,65.145185077599,64.9639778072198,56.352985986476,42.6986558398944,84.8764388976123,122.487609668846,87.184291137445,63.38978524163,43.5955558807363,52.6793754795345,57.8302643815306,62.6672388294862,63.0082357479583,95.4343136461319,85.6477371732639,35.8286957051817,42.1285855178872,47.5186190599812,60.2503747289478,118.395968695076,76.7523796563769,42.5157085687635,59.2041106817509,52.252478483914,51.9909560985645,45.7595928624102,45.3178151622069,116.276008309522,86.0234595106124,162.461754752354,127.759594874826,115.362344957724,128.755243627952,130.621854085507,68.2220244207028,92.4992282985447,105.436993020871,130.113869426254,116.321632174932,151.318475679865,92.283433166813,155.547253993298,68.0463929524688,95.200453993496,89.3009040232745,119.586977223389,142.389848935219,80.2423638415184,238.522555559274,263.690579620861,101.60991414921,79.0185403195556,48.8793775025278,34.4263870114369,42.7386564915732,65.2589823244977,70.0847000177884,131.301264747537,117.413753046568,58.1964636197563,52.1330300909693,49.8558804496049,77.7977178094947,62.8031757683199,112.474287280222,46.8240115245481,78.725111373134,51.4103461098196,51.3188759073252,52.7705798640109,45.0847089514218,46.5471510461157,45.8172003572895,68.298341357181,62.9641514359488,80.1144850862524,267.58744040978,209.117879268525,30.63717273964,57.5545191411035,70.3742853329825,62.7737997859598,66.2013638925882,70.4616496271939,40.8355859376076,50.7672668999479,60.223183646836,59.5528642258369,42.3128445479007,78.422974750452,64.9254160914985,62.9074974400774,36.2869114318722,77.1701080876693,57.5549005276581,76.9537152649623,66.4365293525317,55.3814964325918,63.6753260798686,55.7854348701504,51.7939086477636,52.3672551534403,71.1275396564729,15.368686972329,9.93973262411139,18.3586429733839,25.5006195337811,19.4287055174234,11.3142981313507,89.1762334279951,100.988827296283,131.228175284857,78.4781798374045,53.4190816435493,41.0524596138258,35.4027849164014,34.9465993331049,40.036712101859,43.3580093743888,40.5732758679975,40.5842237562095,43.7573867229522,45.4001645196741,126.962738195439,180.911888206445,73.2601740169892,114.666794880723,81.1232222859717,107.128166617861,42.5368732810611,29.1365645613669,36.6505546858478,57.8183520706031,121.932567088983,130.386033778839,63.1321946745042,60.2750777982028,96.4392583718561,98.79380460156,63.5057904911202,42.4305282208781,62.9310601104004,105.820606208867,96.7639721285116,74.5796276759625,90.8735057653166,97.0089363167206,37.178767919197,30.6545587332401,47.4133407701043,26.2454735162976,64.1691729719643,57.8442396748937,74.1544567979584,49.6984034858875,103.129940695442,503.009165891758,72.6399580609115,85.4191836027981,90.0749708856009,86.8547941973494,42.5435891757533,127.966122562023,112.528749321645,111.197089914758,47.4034741362321,52.8603781805295,75.4581782144726,108.542889646309,75.4210919081575,70.6247692455749,63.6016841528267,27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| |||
|short_description=p1@RELA | |||
}} |
Latest revision as of 10:34, 19 September 2015
Short description: | p1@RELA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RELA_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000426617, ENST00000525301, ENST00000525658, ENST00000527074, ENST00000527909, ENST00000531238, ENST00000531484, ENST00000532879, ENST00000532999, ENST00000533546, ENST00000545816_5end |
EntrezGene: | RELA |
HGNC: | 9955 |
UniProt: | Q96CP1E9PSE4E9PN69E9PNK5E9PMD5E9PKH5E9PM47B4E082 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.09e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.09e-11 | 42 |
endothelial cell | 2.54e-10 | 36 |
meso-epithelial cell | 7.47e-10 | 45 |
endothelial cell of vascular tree | 8.58e-09 | 24 |
defensive cell | 1.20e-08 | 48 |
phagocyte | 1.20e-08 | 48 |
myeloid leukocyte | 1.91e-08 | 72 |
lining cell | 7.44e-08 | 58 |
barrier cell | 7.44e-08 | 58 |
blood vessel endothelial cell | 7.48e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.48e-08 | 18 |
squamous epithelial cell | 1.51e-07 | 63 |
mesodermal cell | 5.41e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 2.51e-13 | 203 |
vessel | 1.50e-12 | 68 |
epithelial tube open at both ends | 8.89e-11 | 59 |
blood vessel | 8.89e-11 | 59 |
blood vasculature | 8.89e-11 | 59 |
vascular cord | 8.89e-11 | 59 |
epithelial tube | 4.99e-10 | 117 |
vasculature | 6.68e-10 | 78 |
vascular system | 6.68e-10 | 78 |
splanchnic layer of lateral plate mesoderm | 1.14e-08 | 83 |
artery | 5.42e-08 | 42 |
arterial blood vessel | 5.42e-08 | 42 |
arterial system | 5.42e-08 | 42 |
circulatory system | 6.55e-08 | 112 |
blood vessel endothelium | 7.48e-08 | 18 |
endothelium | 7.48e-08 | 18 |
cardiovascular system endothelium | 7.48e-08 | 18 |
cardiovascular system | 1.17e-07 | 109 |
simple squamous epithelium | 2.05e-07 | 22 |
immune system | 6.09e-07 | 93 |
hemolymphoid system | 6.40e-07 | 108 |
squamous epithelium | 9.24e-07 | 25 |