FFCP PHASE1:Hg19::chr12:66218904..66218913,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8091 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5009 | |||
|TSSclassifier=strong | |||
|UniProt=F5H2A4 | |||
|association_with_transcript=1bp_to_ENST00000393577_5end | |||
|cluster_id=chr12:66218904..66218913,+ | |||
|coexpression_cluster_id=C1682 | |||
|description=CAGE_peak_11_at_HMGA2_5end | |||
|id=chr12:66218904..66218913,+ | |||
|ontology_enrichment_celltype=CL:0000055!7.70e-33!180;CL:0002321!1.93e-27!248;CL:0000220!2.27e-27!246;CL:0000680!2.73e-26!57;CL:0000056!2.73e-26!57;CL:0000355!2.73e-26!57;CL:0000187!2.46e-24!54;CL:0000183!4.12e-24!59;CL:0000393!1.37e-23!60;CL:0000211!1.37e-23!60;CL:0000192!7.91e-23!42;CL:0000514!7.91e-23!42;CL:0000222!5.90e-21!119;CL:0000012!1.66e-20!682;CL:0000548!4.15e-20!679;CL:0000004!4.15e-20!679;CL:0000255!4.15e-20!679;CL:0002371!4.59e-20!591;CL:0000359!2.33e-19!32;CL:0000144!1.23e-18!625;CL:0000003!1.03e-12!722;CL:0000057!1.88e-11!75;CL:0002539!3.19e-08!10 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.88e-24;32!CL:0000192;4.09e-20;43!CL:0000187;1.34e-14;55!CL:0000393;4.68e-11;61!CL:0000211;4.68e-11;61!CL:0002539;1.31e-10;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,2.58e-30,58;CL:0000056,2.58e-30,58;CL:0000355,2.58e-30,58;CL:0000192,2.28e-28,43;CL:0000514,2.28e-28,43;CL:0000187,9.98e-28,55;CL:0000359,5.14e-26,32;CL:0000393,2.14e-24,61;CL:0000211,2.14e-24,61;CL:0000222,3.72e-18,121;CL:0002321,6.99e-16,250;CL:0002539,1.04e-10,10;CL:0000057,8.51e-07,76;CL:0000723,9.46e-07,433 | |||
|ontology_enrichment_development_v019=CL:0000514;4.09e-20;43!CL:0000355;2.35e-15;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;8.24e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.03e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!4.95e-27!83;UBERON:0002329!4.95e-27!83;UBERON:0003077!4.95e-27!83;UBERON:0003059!4.95e-27!83;UBERON:0007282!4.95e-27!83;UBERON:0009618!4.95e-27!83;UBERON:0007285!4.95e-27!83;UBERON:0000486!1.27e-25!82;UBERON:0004290!4.06e-24!70;UBERON:0001134!9.41e-23!61;UBERON:0002036!9.41e-23!61;UBERON:0003082!9.41e-23!61;UBERON:0002049!2.22e-21!79;UBERON:0007798!2.22e-21!79;UBERON:0002385!3.53e-21!63;UBERON:0001015!3.53e-21!63;UBERON:0000383!3.53e-21!63;UBERON:0001637!7.97e-21!42;UBERON:0003509!7.97e-21!42;UBERON:0004572!7.97e-21!42;UBERON:0005256!4.67e-20!143;UBERON:0001981!6.85e-19!60;UBERON:0007500!6.85e-19!60;UBERON:0004537!6.85e-19!60;UBERON:0006965!6.85e-19!60;UBERON:0000490!6.35e-18!138;UBERON:0000055!9.26e-18!69;UBERON:0004573!1.54e-16!33;UBERON:0004571!1.54e-16!33;UBERON:0003914!1.69e-16!118;UBERON:0004872!5.65e-16!84;UBERON:0004535!4.45e-15!110;UBERON:0002100!6.51e-15!216;UBERON:0001009!6.88e-14!113;UBERON:0003104!3.24e-12!238;UBERON:0009142!3.24e-12!238;UBERON:0000119!3.67e-11!312;UBERON:0000483!1.09e-10!309;UBERON:0000475!1.21e-10!365;UBERON:0000947!2.85e-10!21;UBERON:0010191!2.85e-10!21;UBERON:0000481!2.69e-09!347;UBERON:0004237!3.19e-08!10;UBERON:0004695!3.19e-08!10;UBERON:0002111!3.19e-08!10;UBERON:0004178!3.19e-08!10;UBERON:0003102!3.23e-08!95;UBERON:0000926!2.56e-07!448;UBERON:0004120!2.56e-07!448;UBERON:0006603!2.56e-07!448;UBERON:0000468!3.01e-07!659;UBERON:0001135!7.13e-07!15;UBERON:0000467!8.53e-07!625 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.89e-17;42!UBERON:0003509;1.89e-17;42!UBERON:0004572;1.89e-17;42!UBERON:0004573;2.29e-17;33!UBERON:0004571;2.29e-17;33!UBERON:0007500;2.02e-13;56!UBERON:0001981;2.02e-13;56!UBERON:0004537;2.02e-13;56!UBERON:0000947;7.36e-11;21!UBERON:0010191;7.36e-11;21!UBERON:0004237;1.31e-10;10!UBERON:0004695;1.31e-10;10!UBERON:0002111;1.31e-10;10!UBERON:0004178;1.31e-10;10!UBERON:0000055;3.60e-10;65!UBERON:0002385;4.71e-10;31!UBERON:0001015;4.71e-10;31!UBERON:0000383;4.71e-10;31!UBERON:0002049;5.67e-10;75!UBERON:0007798;5.67e-10;75!UBERON:0003914;1.16e-09;74!UBERON:0001135;2.14e-08;15!UBERON:0004765;3.16e-08;26!UBERON:0010260;1.00e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,2.25e-27,83;UBERON:0001134,4.21e-27,62;UBERON:0002036,4.21e-27,62;UBERON:0003082,4.21e-27,62;UBERON:0007524,2.60e-26,73;UBERON:0002329,3.16e-26,71;UBERON:0003059,3.16e-26,71;UBERON:0007282,3.16e-26,71;UBERON:0004290,3.16e-26,71;UBERON:0009618,3.16e-26,71;UBERON:0002385,1.18e-25,64;UBERON:0001015,1.18e-25,64;UBERON:0000383,1.18e-25,64;UBERON:0003077,1.40e-25,72;UBERON:0007285,1.40e-25,72;UBERON:0001637,2.66e-25,42;UBERON:0003509,2.66e-25,42;UBERON:0004572,2.66e-25,42;UBERON:0007503,4.96e-24,78;UBERON:0007500,5.34e-23,59;UBERON:0001981,5.34e-23,59;UBERON:0004537,5.34e-23,59;UBERON:0006965,5.34e-23,59;UBERON:0002049,3.64e-22,78;UBERON:0007798,3.64e-22,78;UBERON:0000490,1.05e-20,148;UBERON:0000055,2.86e-20,68;UBERON:0004573,1.89e-19,33;UBERON:0004571,1.89e-19,33;UBERON:0004872,1.46e-18,83;UBERON:0003914,4.15e-17,117;UBERON:0004535,1.88e-16,109;UBERON:0005256,5.40e-16,122;UBERON:0001009,1.79e-15,112;UBERON:0003104,3.02e-15,160;UBERON:0009142,3.02e-15,160;UBERON:0000119,1.37e-11,309;UBERON:0000483,1.40e-11,306;UBERON:0000947,5.09e-11,21;UBERON:0010191,5.09e-11,21;UBERON:0004237,1.04e-10,10;UBERON:0004695,1.04e-10,10;UBERON:0002111,1.04e-10,10;UBERON:0004178,1.04e-10,10;UBERON:0002100,1.07e-10,199;UBERON:0002204,1.42e-09,167;UBERON:0000926,1.49e-09,315;UBERON:0004120,1.49e-09,315;UBERON:0006603,1.49e-09,315;UBERON:0001135,1.85e-08,15;UBERON:0010260,1.46e-07,9;UBERON:0000922,2.45e-07,592;UBERON:0005423,6.19e-07,581 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0.446961094427288,0,0,0.631719873426831,0,0.737201809504527,0.697801167972428,1.74753097704138,0.791300934685361,3.46545788288131,2.65117900582333,10.7572023432284,10.2458069764076,10.9546513558106,16.5897151588772,0,1.02000345622126,0,0,0.136874425072884,0.627713197974014,0.0764134057479513,0,0.157421562627358,0,0,0,1.83884244895785,1.204823675113,1.47901604066715,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0.560508562981536,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0,0.289693037921647,0,0.973269740605272,0.756278537312543,0.665188192387692,1.40535657109002,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0.39752481473341,0.860234595106124,2.77712401286075,1.69592382577203,1.25849830862972,1.92582629358047,1.8809546988313,0.775250277507987,0.71153252537342,1.00416183829401,0.402829317109147,0,0,2.20597848207521,0.81014194788176,2.14319347881791,2.46982309888787,1.46394924628319,7.66583187329416,1.89853131913626,3.29763139074733,0,0,0.436094052142534,0.993943903390637,3.03913227994991,13.5057364429483,3.44203944898576,2.83734705758686,0.560677600142307,2.1349799145941,3.20667812942308,1.8672662123986,2.02066008104532,4.7403951902903,0.605429710579726,2.30470369792,1.17160715916898,16.2323239951767,0.570471821544449,28.2458006242904,0.352303495931295,0.971237666208789,1.26405726032024,4.08308342509786,5.77321291365309,1.34323515528495,2.37600571456411,0.494533858557114,0,1.43723628363248,2.35670559535693,2.00189631795143,4.71008996323111,0.877955241761676,0,0.600952235626387,4.65071950956086,1.25572744982203,0.640672166455702,0.847727604638247,3.00091096084402,0.618315175430633,0.772921620136887,0,2.53164498361899,0.584622030967192,1.7670364197088,0.644349290496095,0.161646056818812,1.77504796258307,0.705264687593482,0.847802961552438,5.02478218224572,5.72766853240753,5.73609190778008,0.243947412259191,0.132529768321485,0.232387885739037,0.414644220061482,0.756962552626885,0.36497735907583,1.56449532329816,0.643240938192885,0,1.39310378409594,2.88751792667834,0,0,0,0,0,0,0,0,0,0.738155454624648,0,1.2347220339942,0,0,0,0,0,0.122988438543114,2.23038153388083,1.86575485194663,0,0.100528972411631,2.22212268380471,0.977424915930974,1.03993478527958,1.44331342025273,0,1.76113041353732,0.288732895522148,1.38895653772983,0,0,0,0,0,0,1.87467667973554,3.52762469217605,1.70130116690864,2.23896306757121,1.45316969256981,1.91691339582606,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.897048674762886,0.43596006883328,2.2001485746285,11.6344544182,0,2.535908257668,0.797814349754612,1.04007436911366,1.80045161983499,15.6034045225606,5.86128793835419,0,0,1.64648067356154,0.325736184293735,0,0.791951872933429,0.602878754119172,4.35766729300147,0.199945982364114,0,0,0,1.4377491329495,0,14.2636905040718,6.9495027200438,14.1778662559765,2.86497541183833,0,0,0,0,0.254094624222463,1.30139853857622,0,0.167516265334349,1.91381625495949,0,0,0,0.49076596687656,3.00102312635806,10.5793359242897,0.207970861530807,0.535286966391485,0,0.234282829985426,3.61135319673263,2.27407504055985,7.24311499047534,3.32112799267718,3.68738337083406,5.82120216936155,0.195801157462741,0.343143423810856,0,0,0,0,0,0.907170879989041,0.496215615637554,0.153461973288062,0,0,0,0.160853921143607,0,4.47208112027701,2.30830242907065,3.36721339656617,7.2695620085707,3.37010097533882,0,8.02025881213139,0.460404944679482,0.68888668898764,2.73136752010076,0.393373244878272,1.35359883872224,1.30926073077505,0,1.46139224653261,2.21658420675039,0,0.340187410553031,2.15915916102139,0,1.35473218771926,0.501689773854853,1.01950509218015,0.831076008928724,0.223874754722178,0,0,0,0.984043937099117,2.92840555197873,0,0,0,0,1.30012049207304,0,3.48014585851639,1.23238893691716,0.767518373630648,2.61889487720608,1.82614416276065,1.30515024522806,2.47157219506693,0.178064071293475,3.30569830721956,3.84380134730212,6.38063562472921,0.708104465988849,9.761756535243,8.49993336442728,4.1822236209636,1.84820148105653,5.32306030317022,6.95946393660058,4.26245703939016,7.15624433709956,3.34942532423701,1.89827654831236,1.90630193923825,5.88564920016068,3.42351190427136,2.22742273548156,1.56989728039846,1.43897966066652,0.823611089208164,3.41655966802491,5.0545620393329,6.34041284692033,2.52755073743389,0.975267478179181,3.1682753652067,2.11300293513511,1.77449884830381,0.282810863907425,2.26016233240486,2.75682671773062,6.6343897524122,8.33056681982149,9.260408548267,6.55894752046633,4.46402829317949,7.12594045629425,3.09865162785466,5.0193973271418,2.25972794330179,5.7067368237,2.83808851256478,0.211107635297664,0,2.65631221636001,0.349934720244983,2.11688647996127,2.01090682660736,2.17781969722645,0,1.29151611801369,1.68471475667626,0,4.13502120372527,0,0,0,0,0,0,0,0,5.34120355637366,0,0.245040215981032,0,0,0,0,0.199579371432817,0,0.635020748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| |||
|short_description=p11@HMGA2 | |||
}} |
Latest revision as of 23:29, 19 September 2015
Short description: | p11@HMGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_HMGA2_5end |
Coexpression cluster: | C1682_schwannoma_Fibroblast_hepatoblastoma_Wilms_adrenal_Aortic_meningioma |
Association with transcript: | 1bp_to_ENST00000393577_5end |
EntrezGene: | HMGA2 |
HGNC: | 5009 |
UniProt: | F5H2A4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 2.58e-30 | 58 |
myoblast | 2.58e-30 | 58 |
multi-potent skeletal muscle stem cell | 2.58e-30 | 58 |
smooth muscle cell | 2.28e-28 | 43 |
smooth muscle myoblast | 2.28e-28 | 43 |
muscle cell | 9.98e-28 | 55 |
vascular associated smooth muscle cell | 5.14e-26 | 32 |
electrically responsive cell | 2.14e-24 | 61 |
electrically active cell | 2.14e-24 | 61 |
mesodermal cell | 3.72e-18 | 121 |
embryonic cell | 6.99e-16 | 250 |
aortic smooth muscle cell | 1.04e-10 | 10 |
fibroblast | 8.51e-07 | 76 |
somatic stem cell | 9.46e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.03e-08 | 14 |