FFCP PHASE1:Hg19::chr13:43148281..43148293,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8600 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11926 | |||
|TSSclassifier=strong | |||
|UniProt=O14788,Q5T9Y4 | |||
|association_with_transcript=0bp_to_ENST00000239849,ENST00000398795,NM_003701,uc001uyu.2_5end | |||
|cluster_id=chr13:43148281..43148293,+ | |||
|description=CAGE_peak_1_at_TNFSF11_5end | |||
|id=chr13:43148281..43148293,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002564;5.26e-12;3!CL:0002590;1.51e-10;3!CL:0002602;3.23e-08;2!CL:0002549;4.44e-08;2!CL:0002367;6.89e-08;2!CL:0000650;1.14e-07;2!CL:1000500;1.14e-07;2!CL:1000618;1.14e-07;2!CL:1001318;1.14e-07;2!CL:0002173;1.14e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,5.47e-12,3;CL:0002590,1.04e-10,3;CL:0002602,2.56e-08,2;CL:0002549,4.22e-08,2;CL:0002367,4.53e-08,2;CL:0000650,1.57e-07,2;CL:1000500,1.57e-07,2;CL:1000618,1.57e-07,2;CL:1001318,1.57e-07,2;CL:0002173,1.57e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002200!3.50e-08!11;UBERON:0006876!3.50e-08!11;UBERON:0005284!5.49e-08!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0006876;5.83e-19;11!UBERON:0011135;1.67e-18;5!UBERON:0002216;1.67e-18;5!UBERON:0011134;1.67e-18;5!UBERON:0002209;1.67e-18;5!UBERON:0002213;1.67e-18;5!UBERON:0007844;1.67e-18;5!UBERON:0011138;1.67e-18;5!UBERON:0001130;1.67e-18;5!UBERON:0001066;1.67e-18;5!UBERON:0001468;1.67e-18;5!UBERON:0005284;6.47e-17;5!UBERON:0002242;5.26e-12;3!UBERON:0004905;1.98e-11;8!UBERON:0000982;1.98e-11;8!UBERON:0004770;1.98e-11;8!UBERON:0006444;3.23e-08;2!UBERON:0001995;3.23e-08;2!UBERON:0004715;3.23e-08;2!UBERON:0005629;4.44e-08;2!UBERON:0005358;4.44e-08;2!UBERON:0001886;4.44e-08;2!UBERON:0004086;4.44e-08;2!UBERON:0005282;4.44e-08;2!UBERON:0005281;4.44e-08;2!UBERON:0005969;6.89e-08;2!UBERON:0003956;6.89e-08;2!UBERON:0000075;1.01e-07;16!UBERON:0003567;1.14e-07;2!UBERON:0003838;1.14e-07;2!UBERON:0003586;1.14e-07;2!UBERON:0005169;1.14e-07;2!UBERON:0002321;1.14e-07;2!UBERON:0005215;1.14e-07;2!UBERON:0002303;1.14e-07;2!UBERON:0002319;1.14e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006876,3.25e-19,11;UBERON:0011135,1.38e-18,5;UBERON:0002216,1.38e-18,5;UBERON:0011134,1.38e-18,5;UBERON:0002209,1.38e-18,5;UBERON:0002213,1.38e-18,5;UBERON:0005856,1.38e-18,5;UBERON:0005866,1.38e-18,5;UBERON:0005863,1.38e-18,5;UBERON:0007844,1.38e-18,5;UBERON:0011138,1.38e-18,5;UBERON:0001130,1.38e-18,5;UBERON:0001066,1.38e-18,5;UBERON:0001468,1.38e-18,5;UBERON:0005284,4.24e-17,5;UBERON:0002242,5.47e-12,3;UBERON:0003068,5.47e-12,3;UBERON:0002328,5.47e-12,3;UBERON:0004880,5.47e-12,3;UBERON:0004905,1.76e-11,8;UBERON:0000982,1.76e-11,8;UBERON:0004770,1.76e-11,8;UBERON:0006444,2.56e-08,2;UBERON:0001995,2.56e-08,2;UBERON:0004715,2.56e-08,2;UBERON:0005629,4.22e-08,2;UBERON:0005358,4.22e-08,2;UBERON:0001886,4.22e-08,2;UBERON:0004086,4.22e-08,2;UBERON:0005282,4.22e-08,2;UBERON:0005281,4.22e-08,2;UBERON:0005969,4.53e-08,2;UBERON:0003956,4.53e-08,2;UBERON:0000075,9.75e-08,16;UBERON:0003567,1.57e-07,2;UBERON:0003838,1.57e-07,2;UBERON:0003586,1.57e-07,2;UBERON:0005169,1.57e-07,2;UBERON:0002321,1.57e-07,2;UBERON:0005215,1.57e-07,2;UBERON:0002303,1.57e-07,2;UBERON:0002319,1.57e-07,2 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0.263766978228454,5.94078494208224,2.98257638155124,0,0,0,0,0,0,0.313454721478088,0,0,0.125542639594803,0.0764134057479513,0,0,2.75354993794233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0.205601498999509,0,0,0,0,14.8175907657281,0,0.664601683750863,0,4.86747014957566,6.89314542067355,0.328875809207352,0.829050053357545,0,0,0,0,0.339928028092699,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,2.43806866313962,0,0,0,0,0.724232594804119,2.3858578411533,7.78615792484217,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,1.89853131913626,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0.134710672069688,0,1.36221684880438,10.94734256512,0.937285727335186,0,0,0.149448680551801,0,0,0,0.204154171254893,0.122834317311768,0,0,0,3.64064544775211,0,0.336672227908132,0.250237039743928,0,0,0,4.05642759047811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.132529768321485,0.232387885739037,0.310983165046111,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,9.09309394582185,0,0,0,0,0,0,0,0,1.6437217193015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24396869324463,0,0.37872730027914,0,0,0,0,0,0,0,0.897048674762886,0,0.2933531432838,0,0,0,0,0,1.28603687131071,0,0.266422179016099,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0.508189248444927,0,0,0.167516265334349,0,0,0,0,4.2942022101699,11.0037514633129,5.15403545029498,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.59627214591811,0,0,0,0,0,0,0,0.451199612907412,0.15403067420883,0,0,0.105551628892876,0,0,0,0,2.43851793789468,1.00337954770971,0.509752546090077,0,0,0,0,0.512900250232778,0,0,0.206082023295445,0.0915694648183434,0,0,0,0,0,2.31072925671967,2.14905144616581,0,2.14840489736547,0.435050081742686,0.681813019328807,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,1.86079184679834,2.53103539774981,1.33441135746677,0,0,4.13664222303718,0,0,0,0,0,0,0,0,0,0,0,0,1.13008116620243,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,1.89736586882858,4.89908608342976,0,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22896305723383,0.223676107892416,0.333698283423817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.94622095912132,0,0,0,0,0.808815160325942,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,1.22206028986725,0,0,0,0,1.60515529459758,0,0,0,0,0.789168805698781,4.83962864194656,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.64881328030313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,2.41129722697529,3.98864366131978,3.32352270423348,18.447859107223,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0.453248366080503,0.732761168390412,7.95041333473328,0,0,0,0,0.106787412567695,0.314408610199332,0,8.93098839261511,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0.50313580350515,0,0,0.151230923763239,1.24349760466224,0,0.159296767163702,0,0.155262956876259,0.829412415681711,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59437808376036,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0.235479278551542,0,0,2.73947616152849,0,0,0,0,0,0,0,2.07216164163037,0.6828739083758,0,0.430227358820278,0,0,0.423387050190929,0,0,0,0,0,0,0,0,1.1598144313382,0,1.63757624423474,0,0,0,0,0,0.617393264863557,1.09279780251979,0,0,0,0,0,0,0,0.187967835959707,0.386747327841463,0,0,0,0,0,0.917458566809082,0,0,0,0,3.7031878836078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0.23806443146374,1.29177819672012,0.806971285846153,0,0,0,0,0,1.6164492723501,0.573777643141411,0.332660356546013,0,0,0,0,0,0,0,0,3.42165449104745,6.41136984606466 | |||
|short_description=p1@TNFSF11 | |||
}} |
Latest revision as of 09:53, 17 September 2015
Short description: | p1@TNFSF11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TNFSF11_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000239849, ENST00000398795, NM_003701, uc001uyu.2_5end |
EntrezGene: | TNFSF11 |
HGNC: | 11926 |
UniProt: | O14788Q5T9Y4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 5.47e-12 | 3 |
smooth muscle cell of the brain vasculature | 1.04e-10 | 3 |
annulus pulposus cell | 2.56e-08 | 2 |
fibroblast of choroid plexus | 4.22e-08 | 2 |
trabecular meshwork cell | 4.53e-08 | 2 |
mesangial cell | 1.57e-07 | 2 |
kidney interstitial cell | 1.57e-07 | 2 |
juxtaglomerular complex cell | 1.57e-07 | 2 |
renal interstitial pericyte | 1.57e-07 | 2 |
extraglomerular mesangial cell | 1.57e-07 | 2 |