FFCP PHASE1:Hg19::chr19:54377502..54377530,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr19:54377502..54377530,+ | |||
|coexpression_cluster_id=C482 | |||
|description=CAGE_peak_at_chr19:54377502..54377530,+ | |||
|id=chr19:54377502..54377530,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.70e-16!42;CL:0000048!1.64e-14!430;CL:0000860!5.60e-14!45;CL:0000723!2.27e-13!436;CL:0000144!3.73e-13!625;CL:0000034!2.82e-12!444;CL:0002371!1.14e-11!591;CL:0000766!4.71e-11!76;CL:0000134!1.08e-10!358;CL:0002320!1.29e-10!365;CL:0000557!3.55e-10!71;CL:0000548!6.38e-10!679;CL:0000004!6.38e-10!679;CL:0000255!6.38e-10!679;CL:0000012!1.93e-09!682;CL:0000839!3.81e-09!70;CL:0002009!4.64e-09!65;CL:0002194!1.29e-08!63;CL:0000576!1.29e-08!63;CL:0000040!1.29e-08!63;CL:0000559!1.29e-08!63;CL:0000057!3.97e-08!75;CL:0000219!1.00e-07!390;CL:0000003!9.09e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.98e-20;33!CL:0002057;2.98e-20;33!CL:0000473;2.72e-14;39!CL:0000234;2.72e-14;39!CL:0000576;1.36e-09;48!CL:0000766;1.83e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,1.98e-20,427;CL:0000723,2.84e-19,433;CL:0000860,4.05e-18,42;CL:0002057,4.05e-18,42;CL:0000034,7.14e-18,441;CL:0000473,1.08e-15,48;CL:0000234,1.08e-15,48;CL:0000134,1.19e-15,354;CL:0002320,3.04e-15,361;CL:0000766,1.64e-13,72;CL:0000557,2.85e-12,67;CL:0000839,2.95e-11,66;CL:0000219,6.09e-11,386;CL:0002009,9.21e-11,61;CL:0002194,3.01e-10,59;CL:0000576,3.01e-10,59;CL:0000040,3.01e-10,59;CL:0000559,3.01e-10,59;CL:0000057,2.56e-08,76;CL:0000763,3.73e-08,108;CL:0000049,3.73e-08,108 | |||
|ontology_enrichment_development_v019=CL:0002057;2.51e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!4.10e-15!448;UBERON:0004120!4.10e-15!448;UBERON:0006603!4.10e-15!448;UBERON:0003081!7.94e-15!216;UBERON:0002204!7.50e-12!167;UBERON:0002384!1.04e-09!375;UBERON:0002371!1.95e-08!80;UBERON:0002390!3.88e-08!102;UBERON:0003061!3.88e-08!102;UBERON:0001474!1.26e-07!86;UBERON:0002193!1.29e-07!112;UBERON:0003914!2.35e-07!118;UBERON:0004765!7.02e-07!101;UBERON:0001434!7.02e-07!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,4.89e-22,315;UBERON:0004120,4.89e-22,315;UBERON:0006603,4.89e-22,315;UBERON:0003081,5.49e-16,203;UBERON:0002384,2.47e-14,371;UBERON:0002204,1.91e-12,167;UBERON:0002371,5.98e-10,76;UBERON:0002390,2.61e-09,98;UBERON:0003061,2.61e-09,98;UBERON:0001474,6.30e-09,82;UBERON:0002193,4.31e-08,108;UBERON:0003914,1.15e-07,117;UBERON:0001434,1.98e-07,100;UBERON:0004765,2.87e-07,90 | |||
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| |||
|short_description=p@chr19:54377502..54377530,+ | |||
}} |
Latest revision as of 17:04, 27 July 2015
Short description: | p@chr19:54377502..54377530, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:54377502..54377530, + |
Coexpression cluster: | C482_CD14_Mast_Fibroblast_Smooth_Neutrophils_Basophils_Mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 1.98e-20 | 427 |
somatic stem cell | 2.84e-19 | 433 |
classical monocyte | 4.05e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.05e-18 | 42 |
stem cell | 7.14e-18 | 441 |
defensive cell | 1.08e-15 | 48 |
phagocyte | 1.08e-15 | 48 |
mesenchymal cell | 1.19e-15 | 354 |
connective tissue cell | 3.04e-15 | 361 |
myeloid leukocyte | 1.64e-13 | 72 |
granulocyte monocyte progenitor cell | 2.85e-12 | 67 |
myeloid lineage restricted progenitor cell | 2.95e-11 | 66 |
motile cell | 6.09e-11 | 386 |
macrophage dendritic cell progenitor | 9.21e-11 | 61 |
monopoietic cell | 3.01e-10 | 59 |
monocyte | 3.01e-10 | 59 |
monoblast | 3.01e-10 | 59 |
promonocyte | 3.01e-10 | 59 |
fibroblast | 2.56e-08 | 76 |
myeloid cell | 3.73e-08 | 108 |
common myeloid progenitor | 3.73e-08 | 108 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 4.89e-22 | 315 |
mesoderm-derived structure | 4.89e-22 | 315 |
presumptive mesoderm | 4.89e-22 | 315 |
lateral plate mesoderm | 5.49e-16 | 203 |
connective tissue | 2.47e-14 | 371 |
musculoskeletal system | 1.91e-12 | 167 |
bone marrow | 5.98e-10 | 76 |
hematopoietic system | 2.61e-09 | 98 |
blood island | 2.61e-09 | 98 |
bone element | 6.30e-09 | 82 |
hemolymphoid system | 4.31e-08 | 108 |
epithelial tube | 1.15e-07 | 117 |
skeletal system | 1.98e-07 | 100 |
skeletal element | 2.87e-07 | 90 |