FFCP PHASE1:Hg19::chr21:47532285..47532298,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2212 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-33bp_to_ENST00000460886_5end | |||
|cluster_id=chr21:47532285..47532298,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_18_at_COL6A2_5end | |||
|id=chr21:47532285..47532298,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.08e-37!180;CL:0000057!2.20e-22!75;CL:0000680!5.83e-18!57;CL:0000056!5.83e-18!57;CL:0000355!5.83e-18!57;CL:0000187!2.98e-17!54;CL:0000183!3.59e-16!59;CL:0000393!7.41e-16!60;CL:0000211!7.41e-16!60;CL:0000192!1.97e-12!42;CL:0000514!1.97e-12!42;CL:0000048!2.15e-10!430;CL:0000359!9.35e-10!32;CL:0000723!1.59e-09!436;CL:0000034!4.53e-09!444;CL:0002620!6.16e-09!23 | |||
|ontology_enrichment_celltype_v019=CL:0000187;2.55e-10;55!CL:0000192;3.67e-09;43!CL:0000723;4.11e-09;61!CL:0000134;1.07e-08;55!CL:0002620;1.22e-08;23!CL:0000057;1.68e-08;73!CL:0000359;1.90e-08;32!CL:0000393;3.14e-08;61!CL:0000211;3.14e-08;61!CL:0000048;1.15e-07;58!CL:0002570;1.62e-07;8!CL:0002494;2.19e-07;16!CL:0000188;6.26e-07;9!CL:0002320;6.46e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.69e-20,76;CL:0000187,4.12e-18,55;CL:0000680,1.15e-17,58;CL:0000056,1.15e-17,58;CL:0000355,1.15e-17,58;CL:0000048,2.91e-16,427;CL:0000723,1.57e-15,433;CL:0000393,3.41e-15,61;CL:0000211,3.41e-15,61;CL:0000034,1.36e-14,441;CL:0000192,5.24e-12,43;CL:0000514,5.24e-12,43;CL:0000359,8.75e-09,32;CL:0002620,1.70e-08,23;CL:0002570,1.41e-07,8;CL:0002320,1.44e-07,361;CL:0002494,1.79e-07,16;CL:0000188,4.10e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000355;2.13e-09;58!CL:0000514;3.67e-09;43 | |||
|ontology_enrichment_disease=DOID:2394!5.43e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;6.90e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.73e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.14e-23!83;UBERON:0002329!3.14e-23!83;UBERON:0003077!3.14e-23!83;UBERON:0003059!3.14e-23!83;UBERON:0007282!3.14e-23!83;UBERON:0009618!3.14e-23!83;UBERON:0007285!3.14e-23!83;UBERON:0004290!6.64e-22!70;UBERON:0002385!8.36e-19!63;UBERON:0001015!8.36e-19!63;UBERON:0000383!8.36e-19!63;UBERON:0001134!3.30e-18!61;UBERON:0002036!3.30e-18!61;UBERON:0003082!3.30e-18!61;UBERON:0000486!1.02e-17!82;UBERON:0005256!3.03e-15!143;UBERON:0002100!1.80e-11!216;UBERON:0004872!4.01e-09!84;UBERON:0000475!6.71e-09!365;UBERON:0003102!1.40e-08!95;UBERON:0003104!2.07e-08!238;UBERON:0009142!2.07e-08!238;UBERON:0000481!4.79e-08!347;UBERON:0007100!1.01e-07!27;UBERON:0000948!1.79e-07!24;UBERON:0005498!1.79e-07!24;UBERON:0004140!1.79e-07!24;UBERON:0009881!1.79e-07!24;UBERON:0004141!1.79e-07!24;UBERON:0003084!1.79e-07!24;UBERON:0007005!1.79e-07!24;UBERON:0004139!1.79e-07!24;UBERON:0004291!1.79e-07!24;UBERON:0002199!1.80e-07!45;UBERON:0002416!1.80e-07!45;UBERON:0001637!1.87e-07!42;UBERON:0003509!1.87e-07!42;UBERON:0004572!1.87e-07!42;UBERON:0001013!2.14e-07!14;UBERON:0004573!3.73e-07!33;UBERON:0004571!3.73e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;4.83e-10;31!UBERON:0001015;4.83e-10;31!UBERON:0000383;4.83e-10;31!UBERON:0001013;1.57e-08;14!UBERON:0004573;4.79e-08;33!UBERON:0004571;4.79e-08;33!UBERON:0002199;1.07e-07;46!UBERON:0002416;1.07e-07;46!UBERON:0000948;1.10e-07;22!UBERON:0002384;1.98e-07;198!UBERON:0002204;2.46e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,5.02e-22,73;UBERON:0002329,1.21e-21,71;UBERON:0003059,1.21e-21,71;UBERON:0007282,1.21e-21,71;UBERON:0004290,1.21e-21,71;UBERON:0009618,1.21e-21,71;UBERON:0003077,3.90e-21,72;UBERON:0007285,3.90e-21,72;UBERON:0000486,1.79e-18,83;UBERON:0007503,2.22e-18,78;UBERON:0002385,2.21e-17,64;UBERON:0001015,2.21e-17,64;UBERON:0000383,2.21e-17,64;UBERON:0001134,4.44e-17,62;UBERON:0002036,4.44e-17,62;UBERON:0003082,4.44e-17,62;UBERON:0005256,7.08e-13,122;UBERON:0003104,1.79e-12,160;UBERON:0009142,1.79e-12,160;UBERON:0002199,4.47e-10,46;UBERON:0002416,4.47e-10,46;UBERON:0000926,4.24e-09,315;UBERON:0004120,4.24e-09,315;UBERON:0006603,4.24e-09,315;UBERON:0004872,4.69e-09,83;UBERON:0001013,8.37e-09,14;UBERON:0003102,1.25e-08,99;UBERON:0000490,1.54e-08,148;UBERON:0004573,1.75e-08,33;UBERON:0004571,1.75e-08,33;UBERON:0001637,5.94e-08,42;UBERON:0003509,5.94e-08,42;UBERON:0004572,5.94e-08,42;UBERON:0002097,7.37e-08,41;UBERON:0000948,8.52e-08,24;UBERON:0005498,8.52e-08,24;UBERON:0004140,8.52e-08,24;UBERON:0009881,8.52e-08,24;UBERON:0004141,8.52e-08,24;UBERON:0003084,8.52e-08,24;UBERON:0007005,8.52e-08,24;UBERON:0004139,8.52e-08,24;UBERON:0004291,8.52e-08,24;UBERON:0002204,8.65e-08,167;UBERON:0002384,9.16e-08,371 | |||
|phase1_expression=1.09007027562334,3.63970890614671,1.40954404095971,1.0007329835313,6.70441641640932,1.74467704820074,0,1.89515962028049,3.13422753839806,0,0.697801167972428,0,0,1.36142988256051,4.97096063591874,3.36162573225888,4.21886169616784,2.92124036154949,4.39139518911456,0.369363174230364,1.83600622119828,1.56727360739044,0,0.410623275218653,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,7.31420598941885,1.34140171940727,0,0.361439152384566,2.50668955317945,2.60723734129483,0,5.35298357332899,0.189069634328136,0,0.351339142772504,0.130979075497713,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,1.2663051166458,0.529636723252875,4.87622255272983,2.12801029319014,1.68203280042692,2.1349799145941,1.2333377420858,1.24484414159907,1.34710672069688,0.490385709340376,0.605429710579726,2.30470369792,0,1.5608003841516,0.570471821544449,3.43731965269142,2.46612447151906,3.0755859429945,1.68540968042698,0.816616685019573,3.4393608847295,2.78979609174567,4.75201142912821,4.94533858557114,0,2.15585442544872,0.168336113954066,2.00189631795143,0.831192346452549,0,5.21029252858333,2.55404700141215,0.113432183160021,3.22901344239952,2.56268866582281,0.635795703478686,1.50045548042201,1.33968288009971,1.8034837803194,0.930584281657949,1.0126579934476,1.26668106709558,0.504867548488229,1.56484827691909,3.39456719319505,4.26011511019937,0.806016785821122,1.01736355386293,0,0.272746120590835,0,0,0.132529768321485,0.116193942869518,0.10366105501537,0,0,4.69348596989448,9.00537313470039,0,1.85747171212792,5.77503585335668,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.8231480226628,8.82052268313252,0,0.982827216677626,0,0,0,0.171567810298526,0,0,0,0,0,4.15973914111831,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0.719792448923265,0.300343057843917,0,0.112131084345361,0,0.1466765716419,0.517086863031111,3.57656445851882,3.381211010224,0.531876233169741,0,0,5.67396528093113,1.3321108950805,1.28680194292333,0,0,0.977208552881205,0.710783897485092,0.791951872933429,0.301439377059586,0,0,0,0,0,1.19812427745791,3.44585807502342,1.42636905040718,0.723906533337896,1.43833425785268,0.179060963239896,0,0,0.646882724578552,0,0.508189248444927,0,0.773288812777695,0,0,0,0,0,0.736148950314839,3.00102312635806,2.71265023699736,1.45579603071565,1.60586089917446,0.630809660135739,0.937131319941706,0.300946099727719,11.3703752027992,1.03473071292505,0.664225598535437,0.737476674166813,1.65078867489357,0.391602314925481,5.49029478097369,0,0,0.320182673410333,0,0,0.30239029332968,0.744323423456331,1.2276957863045,3.08726103876381,0.640695746278505,1.02341449813341,0.965123526861645,1.48418066444991,2.62156479464514,3.01854933032316,0.246381468041427,1.55776328755086,3.7187321107187,0,0,0,0.68888668898764,4.00600569614778,4.45823010862042,0,0,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0.103041011647722,0.27470839445503,0.082509499920588,0,0.650060246036521,1.6068392984416,1.06337790121334,4.46740989632469,2.6095624703442,1.7918754422989,1.93356440762893,5.80066775656914,1.53407929348982,0.890320356467374,0,0,0,0,0,5.66662224295152,1.3940745403212,0.308033580176089,0,0.869932992075073,1.66791797193528,0.572499546967965,0,0,1.90630193923825,1.27948895655667,1.28381696410176,1.27281299170375,7.06453776179307,1.2591072030832,2.74537029736055,1.64937363283961,0.606547444719948,0,1.68503382495592,0,2.68084838594413,5.28250733783777,0.272999822815972,2.2624869112594,2.26016233240486,2.75682671773062,1.99031692572366,2.19225442626881,1.15755106853338,0.655894752046633,0.811641507850816,1.239293992399,2.25356482025793,0.286822704408103,0.589494246078727,0.35667105148125,1.41904425628239,2.74439925886963,1.64647446479951,0.379473173765715,3.14941248220485,0,0.670302275535787,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,1.19372242368845,0,0.307160702099232,0,0,0.222617410045812,0,0,1.79323189425963,1.38141957765574,0,0,0,2.48831670129446,0,0,0,0.493217028184668,0,1.11136990144637,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.694499979733169,0,0,0,0,0,0,0,0,0.307801034015188,0.113942055847001,0,0,0,0.31900115973192,0.549585560411174,0,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0.176915129006678,1.22206028986725,0,0,0,0,0.802577647298789,0,0,0,0.242780379534093,0.394584402849391,2.41981432097328,0,0.252746318513952,0,0.207376382794494,0,0,0.313932918407225,0,0,0,0.173559738335131,0,0,1.22308667769421,0.51595809741485,0,0,0,0.290967049465258,0,1.12990370390266,0.137041924646751,0,0,0,0,0.640358984218058,0.599428828746391,0,0,0,0,0,0,0.135904206073614,0.209205692624666,0,0,0,0,0,0,0,1.11712960508902,1.1458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| |||
|short_description=p18@COL6A2 | |||
}} |
Latest revision as of 22:56, 18 September 2015
Short description: | p18@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -33bp_to_ENST00000460886_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.69e-20 | 76 |
muscle cell | 4.12e-18 | 55 |
muscle precursor cell | 1.15e-17 | 58 |
myoblast | 1.15e-17 | 58 |
multi-potent skeletal muscle stem cell | 1.15e-17 | 58 |
multi fate stem cell | 2.91e-16 | 427 |
somatic stem cell | 1.57e-15 | 433 |
electrically responsive cell | 3.41e-15 | 61 |
electrically active cell | 3.41e-15 | 61 |
stem cell | 1.36e-14 | 441 |
smooth muscle cell | 5.24e-12 | 43 |
smooth muscle myoblast | 5.24e-12 | 43 |
vascular associated smooth muscle cell | 8.75e-09 | 32 |
skin fibroblast | 1.70e-08 | 23 |
mesenchymal stem cell of adipose | 1.41e-07 | 8 |
connective tissue cell | 1.44e-07 | 361 |
cardiocyte | 1.79e-07 | 16 |
cell of skeletal muscle | 4.10e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.73e-07 | 14 |