FFCP PHASE1:Hg19::chr22:31644394..31644405,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3985 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6614 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=6bp_to_ENST00000333611_5end | |||
|cluster_id=chr22:31644394..31644405,+ | |||
|coexpression_cluster_id=C4094 | |||
|description=CAGE_peak_4_at_LIMK2_5end | |||
|id=chr22:31644394..31644405,+ | |||
|ontology_enrichment_celltype=CL:0002076!1.04e-10!43;CL:0002077!3.85e-09!33;CL:0000066!9.66e-09!254;CL:0002321!3.24e-07!248;CL:0002159!3.77e-07!13;CL:0000220!4.07e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.50e-11;42!CL:0000349;1.75e-10;19!CL:0002159;2.36e-09;14!CL:0002368;2.57e-09;13!CL:0002077;2.20e-07;34!CL:0000244;2.27e-07;4!CL:0000731;2.27e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.48e-14,42;CL:0000066,5.41e-13,253;CL:0000349,1.06e-10,19;CL:0000223,2.00e-09,58;CL:0002368,2.01e-09,13;CL:0002159,2.77e-09,14;CL:0002077,1.82e-08,34;CL:0000244,2.22e-07,4;CL:0000731,2.22e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.72e-14!365;UBERON:0004121!1.28e-13!169;UBERON:0000924!1.52e-12!173;UBERON:0006601!1.52e-12!173;UBERON:0000119!1.07e-10!312;UBERON:0000483!1.19e-10!309;UBERON:0003075!1.39e-10!86;UBERON:0007284!1.39e-10!86;UBERON:0000033!1.63e-10!123;UBERON:0000153!2.09e-10!129;UBERON:0007811!2.09e-10!129;UBERON:0000064!5.19e-10!219;UBERON:0000468!8.93e-10!659;UBERON:0002346!2.90e-09!90;UBERON:0005631!5.49e-09!14;UBERON:0000158!5.49e-09!14;UBERON:0000467!9.85e-09!625;UBERON:0000480!1.35e-08!626;UBERON:0003056!1.67e-08!61;UBERON:0001049!2.61e-08!57;UBERON:0005068!2.61e-08!57;UBERON:0006241!2.61e-08!57;UBERON:0007135!2.61e-08!57;UBERON:0000922!4.36e-08!612;UBERON:0005743!7.32e-08!86;UBERON:0002050!8.18e-08!605;UBERON:0005423!8.18e-08!605;UBERON:0000481!1.14e-07!347;UBERON:0000923!1.15e-07!604;UBERON:0005291!1.15e-07!604;UBERON:0006598!1.15e-07!604;UBERON:0002532!1.15e-07!604;UBERON:0000062!1.35e-07!511;UBERON:0000063!1.88e-07!97;UBERON:0005085!2.04e-07!29;UBERON:0002616!2.49e-07!59;UBERON:0001017!2.95e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0010371;1.88e-09;31!UBERON:0007625;2.14e-09;11!UBERON:0000478;5.84e-09;24!UBERON:0003688;2.48e-07;6!UBERON:0002358;2.48e-07;6!UBERON:0003684;2.48e-07;6!UBERON:0001178;2.48e-07;6!UBERON:0000019;3.07e-07;19!UBERON:0000047;3.07e-07;19!UBERON:0004088;3.07e-07;19!UBERON:0010230;3.07e-07;19!UBERON:0005631;3.52e-07;10!UBERON:0000158;3.52e-07;10!UBERON:0001801;5.18e-07;14!UBERON:0000970;9.75e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.25e-11,14;UBERON:0000158,1.25e-11,14;UBERON:0010371,8.50e-11,104;UBERON:0005085,2.30e-10,31;UBERON:0003124,1.58e-09,7;UBERON:0007625,2.21e-09,11;UBERON:0000478,4.11e-09,24;UBERON:0004121,2.81e-08,171;UBERON:0000924,2.81e-08,171;UBERON:0006601,2.81e-08,171;UBERON:0000033,1.32e-07,56;UBERON:0000076,1.38e-07,8;UBERON:0004923,2.21e-07,66;UBERON:0003688,4.59e-07,6;UBERON:0002358,4.59e-07,6;UBERON:0003684,4.59e-07,6;UBERON:0001178,4.59e-07,6;UBERON:0001801,5.45e-07,14 | |||
|phase1_expression=1.45342703416445,0.428201047781966,1.12763523276777,2.00146596706261,1.78784437770915,0.872338524100369,0,0,0,0.737201809504527,0,1.96597234917155,2.11013582582763,0.123766352960047,0,2.6893005858071,3.01347264011988,2.92124036154949,2.43966399395253,0.123121058076788,0,0,0,0.410623275218653,0.502170558379211,0,0,0,0,0,0,5.51652734687356,2.409647350226,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0.361439152384566,1.00267582127178,0.144846518960824,0,0.486634870302636,4.06499713805492,1.99556457716308,4.74307842742881,0.589405839739707,4.00724817121796,4.44941331341315,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0.208994966536811,0,0,0,0,0,0,0,1.62028389576352,0,0,0,0,0,0,1.31780417436063,0,5.23312862571041,0.993943903390637,0.633152558322899,0.397227542439656,0.860509862246441,0.354668382198357,0,4.2699598291882,4.19334832309172,0.311211035399766,0.134710672069688,0.163461903113459,0.605429710579726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300476117813194,0.340296549480063,0.179389635688862,0.213557388818567,0,0,0,0,0.18611685633159,0.337552664482532,0.876933046450788,0,0.184099797284599,0.161646056818812,0.710019185033229,1.0075209822764,0.67824236924195,5.02478218224572,3.81844568827169,3.72845974005705,0.121973706129595,0.132529768321485,0.116193942869518,0.207322110030741,0,0,0,0.643240938192885,0,0.928735856063958,1.44375896333917,1.41968160047813,1.68584690078102,0.482022059766964,1.21323370005633,0.871517776369625,1.89816495288877,0.539325232640658,0.392442930250692,0.38474715694639,0,0,0.8231480226628,2.94017422771084,0,0,0,0,0.368965315629341,1.02940686179115,6.91426798074341,1.1240175325762,0.502644862058154,2.12953423864618,0,0,1.44331342025273,3.24605133930215,8.21860859650752,0,0,0,0,0,0,0,0,3.74935335947108,11.4227847175224,5.67100388969546,2.86587272649115,2.03443756959773,1.15014803749563,0,0,0,0,0.12624243342638,0.126995788584338,0.763976851116555,2.34434894420094,1.71072446022705,0.205654985406647,0,0.571652865261156,0,0.43596006883328,0.1466765716419,3.74887975697556,0,0,1.32969058292435,2.08014873822732,0,0,0,0,1.62786481617433,1.64648067356154,0,0,0,4.22015127883421,1.74306691720059,4.79870357673874,0,0,0,0.958499421966331,0,0,0.579125226670317,0.205476322550383,0.358121926479791,0,0,0,0,1.27047312111232,0,0.773288812777695,0,0,0,0,0,0,0,0,0.623912584592421,0.713715955188647,0.157702415033935,0,0,2.27407504055985,2.0694614258501,0.664225598535437,0.184369168541703,0,0.587403472388222,0,0,0,0,1.81876542867756,4.99306318531491,3.0239029332968,1.48864684691266,2.14846762603287,1.68396056659844,2.17836553734692,1.02341449813341,2.73451665944133,0,0,0.355123450626254,0.164254312027618,0,0.116210378459959,0.120859449591622,12.2308946885004,2.76242966807689,0.34444334449382,0,0.524497659837696,0,0.462092022626489,0,0,0.105551628892876,0,0,0.215915916102139,0,1.89662506280697,3.01013864312912,0.254876273045038,0.831076008928724,0,0,0,0,7.21632220539353,2.27764876265012,1.13345112812495,0.183138929636687,0.247528499761764,5.74265537996172,3.90036147621913,0,0.676695028044854,0,0,0.137836572484531,0.107420244868274,0,0.255679882248303,6.49933860221183,3.96683796866347,2.69066094311149,4.46644493731044,1.51736671283325,1.39453664789186,0.62962469366128,0.6970372701606,0.616067160352178,0,0,0.37064843820784,1.71749864090389,0,0.632758849437452,1.90630193923825,0.255897791311334,0,0,0,0,0,0.117812402345686,1.01091240786658,1.58510321173008,0.421258456238981,0.48763373908959,0.243713489631284,0,0.272999822815972,0.707027159768564,0,0,0.66343897524122,1.31535265576129,0.578775534266688,0,0.811641507850816,0.6196469961995,0.281695602532241,0.717056761020258,1.27723753317057,0.7133421029625,0.354761064070598,0,0,0.379473173765715,0,1.34710957815717,2.68120910214315,3.26672954583968,1.03558180854457,8.6101074534246,10.1082885400575,7.09488245658681,3.67557440331135,0,0,0,0,0,0,0,0,1.28188885352968,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43246690842614,0.890894042497916,0.614321404198464,4.97073823883149,1.40669416410513,0.222617410045812,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,1.11136990144637,0.969332746095218,0.556608588971108,0,0,1.66173999992772,0.724999575434793,0.1137934482855,0,0.472775363535873,0,0,0,0.885741385813839,2.05013945663194,4.5774520895125,0.663475559587348,0.295547618953547,0.438770794307945,0,1.95193241990045,0.384751292518985,0,0.922255617552241,1.88491053260521,2.39024218228418,1.27600463892768,3.75550132947635,2.66517388009317,0,0,0,0,0,0,0,0,0,0.163232808159148,0.706765357169704,0,0,0.0884575645033392,0,0,0,0,0.943615861729479,0,0.937057782901357,0,0.391329237864179,0,0,0,0,1.0741718536843,0,0,0,0,0,0,0,0,3.12407529003236,0.489961987071888,0.69647365264322,0.34945333648406,0,0,0,0,0.0969890164884194,0,0,0,0,0.126621591911757,0.782205530939212,0,0.213452994739353,0,0,0,0,0,0,1.88555227693436,0.271808412147228,0.313808538937,0,0.288950589901519,1.20084057741958,2.19048606227189,0,0.429765441419957,0,0,0,0,1.79711100449092,0,0.223171457441873,0,0,0,0,0,0,0,0,0,1.49823746722733,0,0.137539436597234,0,0,0,0.182248669974074,2.34804281319486,0.551639951094387,0.577000469484979,0,0,0.191915197319445,0,0,0.25426853765475,1.08599920350743,3.45688596480507,0.979762080328227,0,0,1.19271615249795,0,0,0,2.45637617086946,1.3223260174269,0,0,0.533937062838473,0.157204305099666,0,0,0,0,3.19170628885091,0,0,0,0,0,0,0.366078794705889,1.1267183763585,0.573409195690071,1.77486482458964,1.61450647647597,0,0,0.758245587708239,0.285465333544967,0,0,0.144921028610825,0,0,0,0.189403005275089,0,0,0,0,0.310874401165561,0.147855149989634,0.477890301491107,0,1.24210365501008,0,0.265841714557995,0,1.35231848097497,1.90402606084398,2.03435366602331,0.181848659202559,1.39633724155235,0,2.3885753321917,0,0.343395705182793,0.336749488765919,0,0,1.28664954824955,0,0,0.231522474323834,0,0.179088841081487,0,0.219284049578707,0.176689145945881,0.192914038270915,0,0,0,0,0.691292180758654,0,0,0,0,0,0,0,0,0,0,0,3.21722867754722,3.11038630016486,0.127894371303652,0,0,0.218419276384028,0,0,0,0,0.318004350653419,0,0,0,0,0.642292250964595,0,1.91560630868582,0,0,0.0691572524642179,0.161475645631851,0,1.17777262201231,1.76954585021611,1.46742878817343,0.115525666150338,0,0,0,0.225630985047772,0,0.781514011233092,2.3571602503328,0,0,0.0675375846183947,0,1.2401207790071,0.317079050969534,0,0.548257766857182,0,0,1.53314913167514,0.535701835878287,0,0.606965604236632,0.227662191351298,3.01588058552972,0,0.171488009437418,0.951576261675644,0.197318320688547,0,0,0.235479278551542,0.942693539496011,1.40136081656895,0,0,0,0.214429632529969,0.316027223465453,0,0,0.801711364730253,0.828864656652147,3.24365106478505,4.14755797088455,0,0,0,0.846774100381858,1.60374807980835,0,0.955538938977433,6.15204874887858,0,0.121917924982269,0,0.410651227424988,0,0.485710993059139,0,0,0,0.11294608203896,0.109940516745429,0,0.0771741581079447,0,0,0,0,2.94462700672418,1.78227840196252,0.8453114551668,0.339854229375634,0.0939839179798536,0,0,0.71421575442263,0.352894871715692,0,0,0,1.43339583151451,0,0.543931921527318,0,0,0.371995018166751,0.462175628631418,0.432626562123789,0,0.437062287854782,0,2.54972074354954,1.87052183685892,3.12442658418473,0.50141507858475,0.151557396436479,0.803892390468535,4.1458471972939,1.44806194206653,0.213233981900981,0.714193294391221,0.0645889098360061,0.248298857183432,0,0.445530107947154,0,0,0,0.0673520530145875,0.215166616178029,0,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0,0 | |||
|short_description=p4@LIMK2 | |||
}} |
Latest revision as of 20:12, 19 September 2015
Short description: | p4@LIMK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LIMK2_5end |
Coexpression cluster: | C4094_Urothelial_Prostate_serous_Mallassezderived_Keratinocyte_Esophageal_Corneal |
Association with transcript: | 6bp_to_ENST00000333611_5end |
EntrezGene: | LIMK2 |
HGNC: | 6614 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.48e-14 | 42 |
epithelial cell | 5.41e-13 | 253 |
extraembryonic cell | 1.06e-10 | 19 |
endodermal cell | 2.00e-09 | 58 |
respiratory epithelial cell | 2.01e-09 | 13 |
general ecto-epithelial cell | 2.77e-09 | 14 |
ecto-epithelial cell | 1.82e-08 | 34 |
transitional epithelial cell | 2.22e-07 | 4 |
urothelial cell | 2.22e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.25e-11 | 14 |
membranous layer | 1.25e-11 | 14 |
ecto-epithelium | 8.50e-11 | 104 |
ectodermal placode | 2.30e-10 | 31 |
chorion | 1.58e-09 | 7 |
pigment epithelium of eye | 2.21e-09 | 11 |
extraembryonic structure | 4.11e-09 | 24 |
ectoderm-derived structure | 2.81e-08 | 171 |
ectoderm | 2.81e-08 | 171 |
presumptive ectoderm | 2.81e-08 | 171 |
head | 1.32e-07 | 56 |
external ectoderm | 1.38e-07 | 8 |
organ component layer | 2.21e-07 | 66 |
omentum | 4.59e-07 | 6 |
peritoneum | 4.59e-07 | 6 |
abdominal cavity | 4.59e-07 | 6 |
visceral peritoneum | 4.59e-07 | 6 |
anterior segment of eyeball | 5.45e-07 | 14 |