FFCP PHASE1:Hg19::chr2:241938025..241938046,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25992 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24696 | |||
|TSSclassifier=strong | |||
|UniProt=Q8TER0,B5MEF5 | |||
|association_with_transcript=-208bp_to_ENST00000310397,ENST00000342631,ENST00000401884,ENST00000405547,NM_001080437,uc002wah.1_5end | |||
|cluster_id=chr2:241938025..241938046,+ | |||
|coexpression_cluster_id=C1156 | |||
|description=CAGE_peak_1_at_SNED1_5end | |||
|id=chr2:241938025..241938046,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.13e-11!180;CL:0000057!4.44e-10!75 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.39e-10,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.48e-22!115;UBERON:0000477!8.63e-11!286;UBERON:0002616!1.18e-10!59;UBERON:0000468!1.67e-10!659;UBERON:0001049!2.42e-10!57;UBERON:0005068!2.42e-10!57;UBERON:0006241!2.42e-10!57;UBERON:0007135!2.42e-10!57;UBERON:0000475!2.85e-10!365;UBERON:0000467!4.32e-09!625;UBERON:0000480!6.96e-09!626;UBERON:0003075!1.91e-08!86;UBERON:0007284!1.91e-08!86;UBERON:0000955!2.09e-08!69;UBERON:0006238!2.09e-08!69;UBERON:0004111!3.07e-08!241;UBERON:0000481!6.01e-08!347;UBERON:0000119!7.14e-08!312;UBERON:0000033!9.72e-08!123;UBERON:0000153!1.30e-07!129;UBERON:0007811!1.30e-07!129;UBERON:0002346!1.31e-07!90;UBERON:0000483!1.53e-07!309;UBERON:0001017!2.15e-07!82;UBERON:0000914!2.17e-07!83;UBERON:0002329!2.17e-07!83;UBERON:0003077!2.17e-07!83;UBERON:0003059!2.17e-07!83;UBERON:0007282!2.17e-07!83;UBERON:0009618!2.17e-07!83;UBERON:0007285!2.17e-07!83;UBERON:0000479!3.44e-07!787;UBERON:0005743!3.81e-07!86;UBERON:0000025!9.32e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;3.57e-07;16!UBERON:0002036;3.57e-07;16!UBERON:0007023;4.72e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.09e-24,114;UBERON:0010314,3.17e-11,132;UBERON:0001049,2.37e-10,56;UBERON:0005068,2.37e-10,56;UBERON:0006241,2.37e-10,56;UBERON:0007135,2.37e-10,56;UBERON:0003075,3.77e-09,82;UBERON:0007284,3.77e-09,82;UBERON:0000073,4.13e-09,53;UBERON:0002616,4.13e-09,53;UBERON:0000479,1.44e-08,773;UBERON:0002346,1.50e-08,86;UBERON:0000955,2.31e-08,68;UBERON:0006238,2.31e-08,68;UBERON:0000119,7.09e-08,309;UBERON:0001017,9.16e-08,81;UBERON:0000483,1.62e-07,306;UBERON:0003076,2.97e-07,15;UBERON:0003057,2.97e-07,15;UBERON:0004111,5.95e-07,240;UBERON:0010371,7.48e-07,104;UBERON:0001016,9.53e-07,89 | |||
|phase1_expression=5.4503513781167,2.35510576280081,1.9733616573436,3.00219895059391,1.78784437770915,0.872338524100369,0,4.42203911398782,30.5587184993811,0,0,0,0,123.395053901166,187.239517286272,0,1.20538905604795,1.46062018077475,0.487932798790507,4.80172126499473,16.7280566820287,3.44800193625897,0.286235987131057,0.958120975510189,0.125542639594803,0,0,0,0,0.383829398097213,0.928896739896456,0.919421224478927,0,0,0,0,0.293600439334847,0.553995408531877,0.802177789880567,0.651032612147555,0.223915474239924,0,0.77272670290256,0.581592955118259,0.755751887377619,0.727752183563449,0,0.822335776043652,0.309706370895104,0,1.5369642391746,0.945928919554341,0.344745680736619,2.5819387343353,0,0.376484679085209,0.818718450173537,0.674170453335254,0.306083892370903,0.320929027076094,1.91801137739712,0.329851300186716,0.398927315243264,0.426224750532694,0,0.56738522469114,0,2.00998932205395,0,0.868755378820466,1.81619850790011,0.368277635987565,0.316462387440884,2.95757400836718,4.67729459923096,2.51590374610051,0.44931452458598,0.901061357049038,0,5.98526761856622,5.56966696157452,4.20127553658658,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0.393419540227666,0,0.205601498999509,0,1.30368906653436,0.946895611469467,0,0.891283655081389,1.76763544484902,1.99380505125259,1.08321545506006,0.128091319725675,0.780356085359269,0,0,0,1.18629250529648,1.07016331235885,0,0,0,0,0.506039384039006,0.637130828648193,1.30216690771284,0.950452044448374,0.301150238155546,0.511946444617674,2.49861453104692,0.473554504088034,0,1.00803371612366,0,3.04131248153878,34.1329612839546,0,0.511450247374121,3.97583067623023,18.5495026935279,17.6712753132205,6.36228757640879,23.3584737745265,0.0945348171640679,0,0.175669571386252,7.7932549921139,0,0,0.97364218096405,1.56716763569341,1.06366368415092,0,0,0,1.39133685156694,6.881876760849,3.47140501607594,3.95715559346807,2.51699661725944,2.20094433552054,1.8809546988313,4.13466814670926,4.26919515224052,3.68192674041137,0.402829317109147,1.52054421143703,1.22031028774085,1.83831540172934,4.0507097394088,1.3394959242612,2.2452937262617,1.35133776579987,4.5994991239765,1.89853131913626,2.93122790288652,0,0,0,3.97577561356255,1.51956613997496,1.58891016975863,15.2023408996871,3.54668382198357,1.68203280042692,0,0.98667019366864,15.5605517699883,1.48181739276657,1.79808093424805,13.168096205109,24.19938882816,7.49828581868149,6.86752169026705,0.570471821544449,7.77133138869366,1.17434498643765,1.61872944368132,1.12360645361799,13.8824836453327,30.0944077413832,80.4907835359213,4.75201142912821,6.18167323196392,2.73048408581408,4.31170885089743,8.75347792561144,19.3933705801544,2.21651292387346,3.5118209670467,1.83892677479412,7.51190294532984,0.794025282120147,1.79389635688862,6.62027905337559,8.9011398487016,6.00182192168805,2.37020817248409,3.34932702059318,2.97786970130544,5.73839529620305,0.974370051611986,5.80597680761463,9.29703976287223,20.0441110455327,5.68015348026583,0.604512589365842,1.01736355386293,0,0,0,0.487894824518382,0,0.116193942869518,0.310983165046111,0.252320850875628,0,1.56449532329816,44.3836247353091,4.14404764057442,13.0023019848954,21.6563844500876,0,0,0.482022059766964,0.110293972732394,0.653638332277218,0.237270619111097,0.134831308160164,0,0,4.42893272774789,1.40241773803446,0,0,1.26755034821831,0,5.31710916013264,0,0.245976877086227,0.343135620597051,0,0,0,0,12.7065239071027,16.6389565644733,0,0,0.587043471179108,0.144366447761074,0.462985512576611,1.52203321787679,0,0.858486162094873,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0.829312462163088,0.144119953416961,0.88369703398466,0.317489471460845,0,1.17217447210047,3.4214489204541,0.308482478109971,0.300343057843917,0,2.35475277125258,4.3596006883328,1.6134422880609,0.129271715757778,150.215707257791,1.690605505112,0.531876233169741,1.04007436911366,3.85811061393213,0,4.79559922228979,2.7165818795048,7.5967024754802,0,0.977208552881205,0.710783897485092,0,0,0,0.099972991182057,0,0,2.10833939483032,0.718874566474748,1.14861935834114,27.1010119577365,2.60606352001643,24.4516823834956,4.83464600747718,0,0.591092280605782,0.431255149719035,0.77005821767849,1.01637849688985,0,0,0.167516265334349,0,0,0,0,215.814333933967,225.076734476855,92.2301080579101,4.36738809214695,4.81758269752337,0.788512075169673,3.74852527976682,11.1350056899256,15.9185252839189,27.9377292489763,1.32845119707087,6.63729006750131,4.51794795234031,96.7257717865938,78.9229874764969,1.03384013061444,0.862856803274467,1.38745825144478,0,3.32870879020994,4.23346410661552,2.48107807818777,1.07423381301644,2.52594084989766,2.69092213436972,0,1.44768529029247,4.45254199334973,1.54209693802656,5.14929003408069,6.24166385704949,4.15403543346897,3.02146983995894,0.120859449591622,0,0.0920809889358963,1.26295892981067,0.546273504020151,1.44236856455367,0,0.385076685522074,0,0,0.211103257785751,0,0.680374821106063,0.431831832204279,4.62681758070868,0.270946437543853,1.50506932156456,0,0,0.447749509444357,0,0,0,0.328014645699706,0.650756789328606,6.38854272215878,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| |||
|short_description=p1@SNED1 | |||
}} |
Latest revision as of 09:18, 16 September 2015
Short description: | p1@SNED1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SNED1_5end |
Coexpression cluster: | C1156_Nucleus_Anulus_Mesenchymal_tenocyte_Pericytes_mesenchymal_Synoviocyte |
Association with transcript: | -208bp_to_ENST00000310397, ENST00000342631, ENST00000401884, ENST00000405547, NM_001080437, uc002wah.1_5end |
EntrezGene: | SNED1 |
HGNC: | 24696 |
UniProt: | Q8TER0B5MEF5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.39e-10 | 76 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.09e-24 | 114 |
structure with developmental contribution from neural crest | 3.17e-11 | 132 |
neural tube | 2.37e-10 | 56 |
neural rod | 2.37e-10 | 56 |
future spinal cord | 2.37e-10 | 56 |
neural keel | 2.37e-10 | 56 |
neural plate | 3.77e-09 | 82 |
presumptive neural plate | 3.77e-09 | 82 |
regional part of nervous system | 4.13e-09 | 53 |
regional part of brain | 4.13e-09 | 53 |
tissue | 1.44e-08 | 773 |
neurectoderm | 1.50e-08 | 86 |
brain | 2.31e-08 | 68 |
future brain | 2.31e-08 | 68 |
cell layer | 7.09e-08 | 309 |
central nervous system | 9.16e-08 | 81 |
epithelium | 1.62e-07 | 306 |
posterior neural tube | 2.97e-07 | 15 |
chordal neural plate | 2.97e-07 | 15 |
anatomical conduit | 5.95e-07 | 240 |
ecto-epithelium | 7.48e-07 | 104 |
nervous system | 9.53e-07 | 89 |