FFCP PHASE1:Hg19::chr9:6757412..6757425,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:6757412..6757425,+
|short_description=p13@KDM4C
|description=CAGE_peak_13_at_KDM4C_5end
|association_with_transcript=-215bp_to_ENST00000438023,ENST00000543...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23081 | |EntrezGene=23081 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17071 | |HGNC=17071 | ||
|TSSclassifier=strong | |||
|UniProt=F8WCN1,F5H347,B4E239,Q9H3R0,B4E1Y4,B4E142,B7Z3V6 | |UniProt=F8WCN1,F5H347,B4E239,Q9H3R0,B4E1Y4,B4E142,B7Z3V6 | ||
|association_with_transcript=-215bp_to_ENST00000438023,ENST00000543771,NM_001146694,NM_001146695,NM_015061,uc003zkg.2,uc003zkh.2,uc010mhv.2,uc010mhw.2,uc011lmi.1,uc011lmj.1,uc011lmk.1_5end | |||
|cluster_id=chr9:6757412..6757425,+ | |||
|description=CAGE_peak_13_at_KDM4C_5end | |||
|id=chr9:6757412..6757425,+ | |||
|ontology_enrichment_celltype=CL:0002057!6.58e-27!42;CL:0000860!1.91e-26!45;CL:0000557!7.61e-25!71;CL:0000839!3.85e-24!70;CL:0002009!1.22e-22!65;CL:0002194!2.93e-21!63;CL:0000576!2.93e-21!63;CL:0000040!2.93e-21!63;CL:0000559!2.93e-21!63;CL:0000766!4.28e-21!76;CL:0002031!3.92e-19!124;CL:0000738!1.06e-18!140;CL:0000763!2.50e-18!112;CL:0000049!2.50e-18!112;CL:0000037!2.70e-17!172;CL:0000566!2.70e-17!172;CL:0002087!2.74e-16!119;CL:0000988!7.09e-16!182;CL:0002032!1.30e-15!165;CL:0000837!1.30e-15!165;CL:0000134!4.29e-08!358;CL:0002320!1.62e-07!365;CL:0000063!5.49e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.33e-51;33!CL:0002057;2.33e-51;33!CL:0000473;7.56e-37;39!CL:0000234;7.56e-37;39!CL:0000576;2.59e-31;48!CL:0000766;2.16e-20;69!CL:0002087;1.82e-11;104!CL:0000763;4.74e-10;100!CL:0000767;2.02e-08;3!CL:0000738;2.75e-07;136!CL:0002393;7.83e-07;6!CL:0002397;7.83e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.81e-60,42;CL:0002057,5.81e-60,42;CL:0000473,1.88e-54,48;CL:0000234,1.88e-54,48;CL:0002009,2.66e-45,61;CL:0000557,6.02e-43,67;CL:0002194,2.16e-41,59;CL:0000576,2.16e-41,59;CL:0000040,2.16e-41,59;CL:0000559,2.16e-41,59;CL:0000839,4.66e-41,66;CL:0000766,4.26e-39,72;CL:0000763,1.34e-32,108;CL:0000049,1.34e-32,108;CL:0000738,1.09e-29,136;CL:0002031,5.46e-29,120;CL:0000988,3.91e-27,177;CL:0002087,5.59e-27,115;CL:0000037,1.04e-26,168;CL:0002032,1.10e-24,161;CL:0000837,1.10e-24,161;CL:0000134,1.30e-11,354;CL:0002320,4.36e-11,361;CL:0000219,2.98e-09,386;CL:0000034,7.11e-09,441;CL:0000767,1.70e-08,3;CL:0000723,3.42e-08,433;CL:0000048,5.04e-08,427 | |||
|ontology_enrichment_development_v019=CL:0002057;6.69e-42;42!CL:0000049;7.63e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!8.15e-22!80;UBERON:0001474!6.12e-19!86;UBERON:0002390!7.17e-19!102;UBERON:0003061!7.17e-19!102;UBERON:0002193!3.16e-16!112;UBERON:0004765!1.59e-15!101;UBERON:0001434!1.59e-15!101;UBERON:0002405!5.34e-15!115;UBERON:0002204!8.27e-09!167;UBERON:0003081!2.05e-08!216;UBERON:0002384!2.57e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.42e-36,76;UBERON:0001474,4.20e-33,82;UBERON:0002390,5.81e-31,98;UBERON:0003061,5.81e-31,98;UBERON:0004765,3.40e-29,90;UBERON:0002405,6.65e-28,93;UBERON:0002193,5.08e-27,108;UBERON:0001434,3.40e-25,100;UBERON:0003081,2.46e-16,203;UBERON:0002204,1.50e-12,167;UBERON:0002384,5.98e-11,371;UBERON:0000926,1.03e-07,315;UBERON:0004120,1.03e-07,315;UBERON:0006603,1.03e-07,315 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0.261185628199839,0,0,0.218441372130172,0,0.123766352960047,0,0,0.602694528023977,0,0,0.123121058076788,0.204000691244253,0,0,0,0.125542639594803,0.382067028739756,0.164201178899891,0.236132343941038,4.32700704533794,3.45446458287491,2.78669021968937,0,0,0.739508020333575,0.0774672005803016,0,0.587200878669695,9.41792194504192,2.4065333696417,3.47217393145363,0,0,0,1.59938062657521,1.51150377475524,2.18325655069035,0.697287110717054,4.11167888021826,2.47765096716083,2.01384674625505,3.33008918487831,3.31075121844019,3.10271112662957,2.5819387343353,5.41705946377367,0.941211697713023,1.91034305040492,1.79778787556068,3.06083892370903,3.20929027076094,4.47535988059329,1.9791078011203,1.79517291859469,2.55734850319616,5.80418477257168,6.24123747160254,3.73693349397345,3.01498398308092,3.12889751052121,3.47502151528187,2.42159801053347,6.2607198117886,5.69632297393592,0.211255286311942,1.06302149982522,0.838634582033504,1.46027220490444,0.750884464207532,0.16072558669708,1.71007646244749,0.59675003159727,0.547992461293902,0,0,0,0,0,1.14950487990897,0,0,1.70763890732835,0,0,1.32171328579026,4.48406850385229,0.526768169550154,0.590129310341499,0.786021525498329,0.822405995998037,0,0,0,0,0.557052284425868,0.294605907474837,0.886135578334485,0,0.128091319725675,0.390178042679635,0.164437904603676,0,0,0.14828656316206,0,0,0,0.383220493601921,0,0.506039384039006,0,0,0,0,0,1.24930726552346,0,0,1.41124720257313,0.267440195783507,0.724122019413995,0,0,0,0,0.50133791063589,0,0.795285947051099,0.486634870302636,0.378139268656271,0.665188192387692,0,0.130979075497713,0,0,0.324547393654683,0.174129737299267,0,0.715471872916026,1.14398982156026,0.371457501329565,0.198762407366705,0,0,0,0,0.275118041940067,0,0,0,0.33472061276467,0,0,0.24406205754817,0,0,0,0,0.225222960966644,0,0,0.366403487860815,0,0,0,0,0.12663051166458,1.05927344650575,0.573673241497627,0,0,0,0,0,0,0.163461903113459,0,0,0,0.312160076830321,0,0.149448680551801,0.352303495931295,0.161872944368132,0.280901613404497,0,0.122834317311768,0,1.18800285728205,0,0,0,0.168336113954066,0.125118519871964,0.277064115484183,0,0,0.300476117813194,0,0.538168907066586,0.213557388818567,0,0.300091096084402,0,0,0.18611685633159,0.506328996723799,0,0.504867548488229,0,0,0.355009592516614,0,0,0.57978255948989,0,0,0,0.132529768321485,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0.435758888184812,0,0.134831308160164,0.196221465125346,0,0,0,0,0,1.26755034821831,0.982827216677626,0,0,0.245976877086227,0.171567810298526,0.109750285408626,1.1240175325762,0.100528972411631,0.0925884451585296,0.325808305310325,0,0,0.34779121492523,0.117408694235822,0,0.462985512576611,0,0,0,0,0.234004265139238,0.445893486866185,0.93733833986777,0,0.283550194484773,0.626909658919938,0.290633938513962,0,0.985326475791887,0.352193736052904,0.829312462163088,0.144119953416961,0.75745460055828,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0.129271715757778,0,0.845302752556,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.199945982364114,0,0.502257091432126,2.10833939483032,0,1.14861935834114,0,0,0,0.179060963239896,0.448340575974109,0.985153801009636,0.862510299438069,1.15508732651774,0.254094624222463,0,0,0,0,0,0,0,0,0.500170521059677,0,0.207970861530807,0.356857977594324,0.157702415033935,0,0,0,0,0,0.368738337083406,0.0868836144680828,0,0,0.413536052245775,1.94142780736755,1.06727557803444,3.03127571446259,0,0.30239029332968,0.248107807818777,0.153461973288062,0,0,0.511707249066704,0.160853921143607,0,0.308419387605311,0,0.246381468041427,0.519254429183621,0,0.120859449591622,0.40101294060657,0.644566922551274,0,0.546273504020151,0,0,0.308061348417659,0,0,0.211103257785751,0,0,0,0,0,0,0.509752546090077,0,0,4.60445740956463,3.39866086332371,0.256450125116389,0.328014645699706,0.325378394664303,0.309123034943167,0,0.082509499920588,0,0,1.6068392984416,0.193341436584244,0.154048617114644,0.15350367472613,0,0.322260734604821,0,0.255679882248303,0,0.826424576804891,0.768760269460425,3.06270509987002,0.50578890427775,0,0.31481234683064,0,0.308033580176089,0.532306030317022,0.869932992075073,0.18532421910392,0.429374660225974,0,0,0,0.255897791311334,0,1.27281299170375,0,0,0.274537029736055,0.117812402345686,0.202182481573316,0,0,0,0.243713489631284,0,0.136499911407986,0,1.13008116620243,0.551365343546124,0,0,0,0,0.405820753925408,0.30982349809975,0.281695602532241,0,0.196498082026242,0.7133421029625,0,0,0,0,0,0.288666338176536,0,1.08890984861323,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0.106824071127473,0,0,0,0,0.213425530045242,0,0,0.191505370132367,0,0,0,0.228234679033192,0.156679895773023,0,0,0,0,0.425846237690326,0.343505344755765,0.307240764308458,0,0,0,0,0,0,0,0,0.935702702041099,0.146508179271894,0,0.334330152832435,0.284136146806413,1.67121139316383,0.593929361665277,1.84296421259539,0,0,0.111308705022906,1.97764649072111,0,0,0.276283915531148,0,0.20453736500431,0.369254416383208,0.933118762985422,0.449341755736634,0.1790211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| |phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0.261185628199839,0,0,0.218441372130172,0,0.123766352960047,0,0,0.602694528023977,0,0,0.123121058076788,0.204000691244253,0,0,0,0.125542639594803,0.382067028739756,0.164201178899891,0.236132343941038,4.32700704533794,3.45446458287491,2.78669021968937,0,0,0.739508020333575,0.0774672005803016,0,0.587200878669695,9.41792194504192,2.4065333696417,3.47217393145363,0,0,0,1.59938062657521,1.51150377475524,2.18325655069035,0.697287110717054,4.11167888021826,2.47765096716083,2.01384674625505,3.33008918487831,3.31075121844019,3.10271112662957,2.5819387343353,5.41705946377367,0.941211697713023,1.91034305040492,1.79778787556068,3.06083892370903,3.20929027076094,4.47535988059329,1.9791078011203,1.79517291859469,2.55734850319616,5.80418477257168,6.24123747160254,3.73693349397345,3.01498398308092,3.12889751052121,3.47502151528187,2.42159801053347,6.2607198117886,5.69632297393592,0.211255286311942,1.06302149982522,0.838634582033504,1.46027220490444,0.750884464207532,0.16072558669708,1.71007646244749,0.59675003159727,0.547992461293902,0,0,0,0,0,1.14950487990897,0,0,1.70763890732835,0,0,1.32171328579026,4.48406850385229,0.526768169550154,0.590129310341499,0.786021525498329,0.822405995998037,0,0,0,0,0.557052284425868,0.294605907474837,0.886135578334485,0,0.128091319725675,0.390178042679635,0.164437904603676,0,0,0.14828656316206,0,0,0,0.383220493601921,0,0.506039384039006,0,0,0,0,0,1.24930726552346,0,0,1.41124720257313,0.267440195783507,0.724122019413995,0,0,0,0,0.50133791063589,0,0.795285947051099,0.486634870302636,0.378139268656271,0.665188192387692,0,0.130979075497713,0,0,0.324547393654683,0.174129737299267,0,0.715471872916026,1.14398982156026,0.371457501329565,0.198762407366705,0,0,0,0,0.275118041940067,0,0,0,0.33472061276467,0,0,0.24406205754817,0,0,0,0,0.225222960966644,0,0,0.366403487860815,0,0,0,0,0.12663051166458,1.05927344650575,0.573673241497627,0,0,0,0,0,0,0.163461903113459,0,0,0,0.312160076830321,0,0.149448680551801,0.352303495931295,0.161872944368132,0.280901613404497,0,0.122834317311768,0,1.18800285728205,0,0,0,0.168336113954066,0.125118519871964,0.277064115484183,0,0,0.300476117813194,0,0.538168907066586,0.213557388818567,0,0.300091096084402,0,0,0.18611685633159,0.506328996723799,0,0.504867548488229,0,0,0.355009592516614,0,0,0.57978255948989,0,0,0,0.132529768321485,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0.435758888184812,0,0.134831308160164,0.196221465125346,0,0,0,0,0,1.26755034821831,0.982827216677626,0,0,0.245976877086227,0.171567810298526,0.109750285408626,1.1240175325762,0.100528972411631,0.0925884451585296,0.325808305310325,0,0,0.34779121492523,0.117408694235822,0,0.462985512576611,0,0,0,0,0.234004265139238,0.445893486866185,0.93733833986777,0,0.283550194484773,0.626909658919938,0.290633938513962,0,0.985326475791887,0.352193736052904,0.829312462163088,0.144119953416961,0.75745460055828,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0.129271715757778,0,0.845302752556,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.199945982364114,0,0.502257091432126,2.10833939483032,0,1.14861935834114,0,0,0,0.179060963239896,0.448340575974109,0.985153801009636,0.862510299438069,1.15508732651774,0.254094624222463,0,0,0,0,0,0,0,0,0.500170521059677,0,0.207970861530807,0.356857977594324,0.157702415033935,0,0,0,0,0,0.368738337083406,0.0868836144680828,0,0,0.413536052245775,1.94142780736755,1.06727557803444,3.03127571446259,0,0.30239029332968,0.248107807818777,0.153461973288062,0,0,0.511707249066704,0.160853921143607,0,0.308419387605311,0,0.246381468041427,0.519254429183621,0,0.120859449591622,0.40101294060657,0.644566922551274,0,0.546273504020151,0,0,0.308061348417659,0,0,0.211103257785751,0,0,0,0,0,0,0.509752546090077,0,0,4.60445740956463,3.39866086332371,0.256450125116389,0.328014645699706,0.325378394664303,0.309123034943167,0,0.082509499920588,0,0,1.6068392984416,0.193341436584244,0.154048617114644,0.15350367472613,0,0.322260734604821,0,0.255679882248303,0,0.826424576804891,0.768760269460425,3.06270509987002,0.50578890427775,0,0.31481234683064,0,0.308033580176089,0.532306030317022,0.869932992075073,0.18532421910392,0.429374660225974,0,0,0,0.255897791311334,0,1.27281299170375,0,0,0.274537029736055,0.117812402345686,0.202182481573316,0,0,0,0.243713489631284,0,0.136499911407986,0,1.13008116620243,0.551365343546124,0,0,0,0,0.405820753925408,0.30982349809975,0.281695602532241,0,0.196498082026242,0.7133421029625,0,0,0,0,0,0.288666338176536,0,1.08890984861323,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0.106824071127473,0,0,0,0,0.213425530045242,0,0,0.191505370132367,0,0,0,0.228234679033192,0.156679895773023,0,0,0,0,0.425846237690326,0.343505344755765,0.307240764308458,0,0,0,0,0,0,0,0,0.935702702041099,0.146508179271894,0,0.334330152832435,0.284136146806413,1.67121139316383,0.593929361665277,1.84296421259539,0,0,0.111308705022906,1.97764649072111,0,0,0.276283915531148,0,0.20453736500431,0.369254416383208,0.933118762985422,0.449341755736634,0.1790211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| ||
|short_description=p13@KDM4C | |||
}} | }} |
Latest revision as of 15:14, 17 September 2015
Short description: | p13@KDM4C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_KDM4C_5end |
Coexpression cluster: | NA |
Association with transcript: | -215bp_to_ENST00000438023, ENST00000543771, NM_001146694, NM_001146695, NM_015061, uc003zkg.2, uc003zkh.2, uc010mhv.2, uc010mhw.2, uc011lmi.1, uc011lmj.1, uc011lmk.1_5end |
EntrezGene: | KDM4C |
HGNC: | 17071 |
UniProt: | F8WCN1F5H347B4E239Q9H3R0B4E1Y4B4E142B7Z3V6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.81e-60 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.81e-60 | 42 |
defensive cell | 1.88e-54 | 48 |
phagocyte | 1.88e-54 | 48 |
macrophage dendritic cell progenitor | 2.66e-45 | 61 |
granulocyte monocyte progenitor cell | 6.02e-43 | 67 |
monopoietic cell | 2.16e-41 | 59 |
monocyte | 2.16e-41 | 59 |
monoblast | 2.16e-41 | 59 |
promonocyte | 2.16e-41 | 59 |
myeloid lineage restricted progenitor cell | 4.66e-41 | 66 |
myeloid leukocyte | 4.26e-39 | 72 |
myeloid cell | 1.34e-32 | 108 |
common myeloid progenitor | 1.34e-32 | 108 |
leukocyte | 1.09e-29 | 136 |
hematopoietic lineage restricted progenitor cell | 5.46e-29 | 120 |
hematopoietic cell | 3.91e-27 | 177 |
nongranular leukocyte | 5.59e-27 | 115 |
hematopoietic stem cell | 1.04e-26 | 168 |
hematopoietic oligopotent progenitor cell | 1.10e-24 | 161 |
hematopoietic multipotent progenitor cell | 1.10e-24 | 161 |
mesenchymal cell | 1.30e-11 | 354 |
connective tissue cell | 4.36e-11 | 361 |
motile cell | 2.98e-09 | 386 |
stem cell | 7.11e-09 | 441 |
basophil | 1.70e-08 | 3 |
somatic stem cell | 3.42e-08 | 433 |
multi fate stem cell | 5.04e-08 | 427 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.42e-36 | 76 |
bone element | 4.20e-33 | 82 |
hematopoietic system | 5.81e-31 | 98 |
blood island | 5.81e-31 | 98 |
skeletal element | 3.40e-29 | 90 |
immune system | 6.65e-28 | 93 |
hemolymphoid system | 5.08e-27 | 108 |
skeletal system | 3.40e-25 | 100 |
lateral plate mesoderm | 2.46e-16 | 203 |
musculoskeletal system | 1.50e-12 | 167 |
connective tissue | 5.98e-11 | 371 |
mesoderm | 1.03e-07 | 315 |
mesoderm-derived structure | 1.03e-07 | 315 |
presumptive mesoderm | 1.03e-07 | 315 |