FFCP PHASE1:Hg19::chr3:98705008..98705016,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr3:98705008..98705016,- | |||
|coexpression_cluster_id=C369 | |||
|description=CAGE_peak_at_chr3:98705008..98705016,- | |||
|id=chr3:98705008..98705016,- | |||
|ontology_enrichment_celltype=CL:0000066!2.22e-13!254;CL:0000220!2.35e-09!246;CL:0002321!3.61e-09!248;CL:0000075!3.73e-09!27;CL:0002274!6.18e-09!5;CL:0000457!6.18e-09!5;CL:0002191!6.18e-09!5;CL:0000097!6.18e-09!5;CL:0000831!6.18e-09!5;CL:0002028!6.18e-09!5;CL:0000149!1.02e-08!4;CL:0000306!1.06e-08!4;CL:0002222!1.06e-08!4;CL:0002224!1.06e-08!4;CL:0000064!1.95e-07!3;CL:0005012!1.95e-07!3;CL:0000067!1.95e-07!3;CL:0002304!1.95e-07!3;CL:1000497!2.25e-07!18;CL:0002518!2.25e-07!18;CL:1000507!2.33e-07!12;CL:1000494!2.33e-07!12;CL:0000147!4.04e-07!14;CL:0002586!6.37e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000064;9.33e-29;3!CL:0000067;9.33e-29;3!CL:0005012;9.33e-29;3!CL:0002304;9.33e-29;3!CL:0000306;1.76e-21;4!CL:0002222;1.76e-21;4!CL:0002224;1.76e-21;4!CL:0000149;4.16e-21;4!CL:0000075;4.40e-16;27!CL:0002586;2.63e-13;3!CL:1000507;8.05e-09;10!CL:1000494;8.05e-09;10!CL:0000710;1.30e-07;20!CL:0002077;8.71e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,8.12e-29,3;CL:0000067,8.12e-29,3;CL:0005012,8.12e-29,3;CL:0002304,8.12e-29,3;CL:0000306,1.76e-21,4;CL:0002222,1.76e-21,4;CL:0002224,1.76e-21,4;CL:0000149,4.95e-21,4;CL:0000075,4.51e-16,27;CL:0002586,2.63e-13,3;CL:0000066,8.43e-09,253;CL:1000507,8.50e-09,10;CL:1000494,8.50e-09,10;CL:0000710,1.32e-07,20 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:120!8.11e-09!27;DOID:193!5.49e-08!29;DOID:2394!2.57e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007625!5.66e-21!11;UBERON:0000970!5.13e-12!20;UBERON:0000020!1.29e-11!23;UBERON:0002104!2.74e-11!21;UBERON:0001032!5.54e-11!24;UBERON:0004456!5.54e-11!24;UBERON:0000019!7.43e-11!19;UBERON:0000047!7.43e-11!19;UBERON:0004088!7.43e-11!19;UBERON:0003072!7.43e-11!19;UBERON:0003071!7.43e-11!19;UBERON:0004128!7.43e-11!19;UBERON:0001456!1.52e-09!21;UBERON:0010077!1.06e-08!4;UBERON:0005389!1.06e-08!4;UBERON:0000484!1.06e-08!4;UBERON:0002546!1.06e-08!4;UBERON:0000965!1.06e-08!4;UBERON:0001803!1.06e-08!4;UBERON:0003073!1.06e-08!4;UBERON:0005426!1.06e-08!4;UBERON:0000488!1.10e-08!4;UBERON:0001801!3.45e-08!14;UBERON:0001778!1.95e-07!3;UBERON:0001775!1.95e-07!3;UBERON:0009773!2.33e-07!12;UBERON:0001231!2.33e-07!12;UBERON:0004810!2.33e-07!12;UBERON:0001781!6.37e-07!3;UBERON:0001782!6.37e-07!3;UBERON:0005424!6.37e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;6.40e-53;11!UBERON:0000019;2.82e-30;19!UBERON:0000047;2.82e-30;19!UBERON:0004088;2.82e-30;19!UBERON:0010230;2.82e-30;19!UBERON:0001778;9.33e-29;3!UBERON:0001775;9.33e-29;3!UBERON:0000970;1.02e-28;20!UBERON:0002104;2.63e-27;21!UBERON:0001456;2.63e-27;21!UBERON:0000020;7.50e-25;23!UBERON:0001032;8.91e-24;24!UBERON:0004456;8.91e-24;24!UBERON:0001801;1.49e-23;14!UBERON:0000488;9.74e-22;4!UBERON:0010077;1.76e-21;4!UBERON:0005389;1.76e-21;4!UBERON:0000484;1.76e-21;4!UBERON:0000965;1.76e-21;4!UBERON:0001803;1.76e-21;4!UBERON:0010371;4.26e-17;31!UBERON:0002203;1.07e-14;6!UBERON:0001768;1.07e-14;6!UBERON:0002200;1.07e-14;6!UBERON:0001781;2.63e-13;3!UBERON:0001782;2.63e-13;3!UBERON:0004211;8.05e-09;10!UBERON:0009773;8.05e-09;10!UBERON:0001231;8.05e-09;10!UBERON:0004810;8.05e-09;10!UBERON:0000966;2.45e-08;5!UBERON:0005388;2.45e-08;5!UBERON:0001802;2.45e-08;5!UBERON:0006876;3.01e-08;11!UBERON:0001444;1.05e-07;48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,5.80e-53,11;UBERON:0001778,8.12e-29,3;UBERON:0001775,8.12e-29,3;UBERON:0000019,9.69e-29,20;UBERON:0000047,9.69e-29,20;UBERON:0010312,9.69e-29,20;UBERON:0004088,9.69e-29,20;UBERON:0010230,9.69e-29,20;UBERON:0003072,9.69e-29,20;UBERON:0004128,9.69e-29,20;UBERON:0003071,9.69e-29,20;UBERON:0000970,2.50e-27,21;UBERON:0002104,2.50e-27,21;UBERON:0001456,4.81e-26,22;UBERON:0000020,8.52e-24,24;UBERON:0001032,8.52e-24,24;UBERON:0004456,8.52e-24,24;UBERON:0001801,1.40e-23,14;UBERON:0000488,8.79e-22,4;UBERON:0010077,1.76e-21,4;UBERON:0005389,1.76e-21,4;UBERON:0000484,1.76e-21,4;UBERON:0002546,1.76e-21,4;UBERON:0000965,1.76e-21,4;UBERON:0001803,1.76e-21,4;UBERON:0003073,1.76e-21,4;UBERON:0005426,1.76e-21,4;UBERON:0005085,3.32e-18,31;UBERON:0002203,1.00e-14,6;UBERON:0001768,1.00e-14,6;UBERON:0002200,1.00e-14,6;UBERON:0001782,2.63e-13,3;UBERON:0005424,2.63e-13,3;UBERON:0000033,3.81e-12,56;UBERON:0001444,3.78e-11,49;UBERON:0000076,4.96e-11,8;UBERON:0000153,7.59e-11,62;UBERON:0007811,7.59e-11,62;UBERON:0001781,3.30e-10,4;UBERON:0004810,8.50e-09,10;UBERON:0003056,1.35e-08,61;UBERON:0006876,2.90e-08,11;UBERON:0000966,4.39e-07,6;UBERON:0005388,4.39e-07,6;UBERON:0001802,4.39e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0.487932798790507,0,0,0,0.572471974262113,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.18464610446916,3.54767035940102,4.83091321312193,0,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0.33472061276467,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0.109750285408626,0,0,0,0,0,1.44331342025273,12.9842053572086,0.234817388471643,0,0,0,0,0,0,0,0,1.87467667973554,0.16798212819886,0.141775097242386,0,0,0,0.985326475791887,0.352193736052904,0.414656231081544,0.144119953416961,0.12624243342638,0.063497894292169,0.381988425558278,0,0,0.102827492703324,1.20137223137567,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,1.20575750823834,0,0,0,0,0,0,0,0,0.289562613335158,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0.519254429183621,0,0,0.200506470303285,0,0,0.182091168006717,0.131124414959424,0.451199612907412,2.15642943892361,0,0,2.42768746453614,0,0,0,0,0.812839312631559,2.00675909541941,0.509752546090077,0,0.223874754722178,0,0,3.33385162651306,0.328014645699706,2.27764876265012,0,0,0,0,0,0,0,0.154048617114644,0,0,0.107420244868274,0.145016693914229,0,0,0.165284915360978,0,0.127612712494584,0,0,0,0,0.308033580176089,0,0.869932992075073,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405820753925408,0,0,0,0.0982490410131212,0.35667105148125,0.354761064070598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0.284136146806413,0,0,0,0,0,1.33570446027487,0,0,0,0,0,0.20453736500431,0,0,0.359473404589307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.843992258112108,2.61172493054636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0.416024019039416,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,1.73953549791606,0,1.76675467895698,1.15063130943567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.62899880526114,0.864221491201268,0,7.18381149374925,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318593534327405,0,0.155262956876259,0.414706207840855,0.265841714557995,1.04349012362347,0,0.380805212168795,0,0,0.537052785212442,0,0.398095888698616,0,0,0,0,0,0,0.260994291965212,0,0.231522474323834,0,0,0,0,0.883445729729405,0.192914038270915,0.168942440653073,3.33113974164331,0,0,0,0,0,0,0.327609848846413,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0.327543835020193,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0.431855182437243,0.47775168788705,0,0,0,0,0,0,0,0,0,0.236664001461131,0.255640214277473,0,0.22910686854405,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244209805832924,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:98705008..98705016,- | |||
}} |
Latest revision as of 00:10, 30 July 2015
Short description: | p@chr3:98705008..98705016, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:98705008..98705016, - |
Coexpression cluster: | C369_Lens_eye_Ciliary_retina_H9_Retinal_Renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 8.12e-29 | 3 |
ciliated epithelial cell | 8.12e-29 | 3 |
multi-ciliated epithelial cell | 8.12e-29 | 3 |
non-pigmented ciliary epithelial cell | 8.12e-29 | 3 |
crystallin accumulating cell | 1.76e-21 | 4 |
vertebrate lens cell | 1.76e-21 | 4 |
lens epithelial cell | 1.76e-21 | 4 |
visual pigment cell | 4.95e-21 | 4 |
columnar/cuboidal epithelial cell | 4.51e-16 | 27 |
retinal pigment epithelial cell | 2.63e-13 | 3 |
epithelial cell | 8.43e-09 | 253 |
kidney tubule cell | 8.50e-09 | 10 |
nephron tubule epithelial cell | 8.50e-09 | 10 |
neurecto-epithelial cell | 1.32e-07 | 20 |